Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s40168-021-01013-0

https://doi.org/10.1186/s40168-021-01013-0

animalcules: interactive microbiome analytics and visualization in R

Cited by: 16
Author(s): Yue Zhao, Anthony Federico, Tyler Faits, Solaiappan Manimaran, Daniel Segrè, Stefano Monti, W. Evan Johnson
Published: over 3 years ago

Software Mentions 7

bioconductor: animalcules
Interactive microbiome analysis toolkit
Papers that mentioned: 1
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: MultiAssayExperiment
Software for the integration of multi-omics experiments in Bioconductor
Papers that mentioned: 16
bioconductor: SummarizedExperiment
SummarizedExperiment container
Papers that mentioned: 52
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292