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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1128/mSystems.00510-21

https://doi.org/10.1128/mSystems.00510-21

Dysbiosis of the Urinary Bladder Microbiome in Cats with Chronic Kidney Disease

Cited by: 5
Author(s): Younjung Kim, Maura Carrai, Marcus H. Y. Leung, Jaime Chin, Jun Li, Patrick K. H. Lee, Julia A. Beatty, Dirk U. Pfeiffer, Vanessa R. Barrs
Published: almost 4 years ago

Software Mentions 7

bioconductor: dada2
Accurate, high-resolution sample inference from amplicon sequencing data
Papers that mentioned: 274
Very Likely Science (100)
bioconductor: decontam
Identify Contaminants in Marker-gene and Metagenomics Sequencing Data
Papers that mentioned: 76
Very Likely Science (100)
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
Very Likely Science (85)
pypi: alignment
Native Python library for generic sequence alignment.
Papers that mentioned: 30
Very Likely Science (65)
pypi: decontam
Decontaminate paired-end DNA sequencing data
Papers that mentioned: 76
Very Likely Science (75)
pypi: phylogeny
An exploration of algorithms for phylogeny reconstruction.
Papers that mentioned: 65
Very Likely Science (90)
pypi: q2
A reinforcement learning framework and command line tool
Papers that mentioned: 27
Very Likely Science (80)