Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: PERMANOVA

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/PERMANOVA

Multivariate Analysis of Variance Based on Distances and Permutations
2 versions
Latest release: about 3 years ago
299 downloads last month

Papers Mentioning PERMANOVA 6,292

10.3389/fmicb.2020.01110
Dietary Soluble and Insoluble Fiber With or Without Enzymes Altered the Intestinal Microbiota in Weaned Pigs Challenged With Enterotoxigenic E. coli F18
Cited by: 28
Author(s): Qingyun Li, Xiyu Peng, Eric Burrough, Orhan Şahin, Stacie A Gould, Nicholas K. Gabler, Crystal L. Loving, Karin S. Dorman, John F. Patience
Software Mentions: 5
Published: over 4 years ago
10.1371/journal.pone.0118896
Wood-Inhabiting Beetles in Low Stumps, High Stumps and Logs on Boreal Clear-Cuts: Implications for Dead Wood Management
Cited by: 21
Author(s): Jon Andersson, Joakim Hjältén, Mats Dynesius
Software Mentions: 5
Published: over 9 years ago
10.1128/mSystems.00132-17
Direct PCR Offers a Fast and Reliable Alternative to Conventional DNA Isolation Methods for Gut Microbiomes
Cited by: 18
Author(s): Elin Videvall, Maria Strandh, Anel Engelbrecht, S.W.P. Cloete, Charlie K. Cornwallis
Software Mentions: 5
Published: almost 7 years ago
10.3389/fmicb.2020.01735
Great Tit (Parus major) Uropygial Gland Microbiomes and Their Potential Defensive Roles
Cited by: 13
Author(s): Kasun H. Bodawatta, Signe K. Schierbech, Nanna R. Petersen, Kateřina Sam, Nick Bos, Knud A. Jønsson, Michael Poulsen
Software Mentions: 5
Published: over 4 years ago
10.1038/s41396-020-0683-6
Drought and plant litter chemistry alter microbial gene expression and metabolite production
Cited by: 61
Author(s): Ashish Malik, Tami L. Swenson, Claudia Weihe, Eric W. Morrison, Jennifer B. H. Martiny, Eoin L. Brodie, Trent Northen, Steven D. Allison
Software Mentions: 5
Published: over 4 years ago
10.1038/s41396-020-00735-7
Composition and activity of nitrifier communities in soil are unresponsive to elevated temperature and CO2, but strongly affected by drought
Cited by: 35
Author(s): Joana Séneca, Petra Pjevac, Alberto Canarini, Craig W. Herbold, Christos Zioutis, Marlies Dietrich, Eva Simon, Judith Prommer, Michael Bahn, E. M. Pötsch, Michael Wagner, Wolfgang Wanek, Andreas Richter
Software Mentions: 5
Published: over 4 years ago
10.3389/fmicb.2019.01961
Sponges and Their Microbiomes Show Similar Community Metrics Across Impacted and Well-Preserved Reefs
Cited by: 19
Author(s): Marta Turon, Joan Cáliz, Xavier Triadó–Margarit, Emilio O. Casamayor, María Jesús Uriz
Software Mentions: 5
Published: over 5 years ago
10.1038/s41396-021-00920-2
Conserved and reproducible bacterial communities associate with extraradical hyphae of arbuscular mycorrhizal fungi
Cited by: 72
Author(s): Bryan D. Emmett, Veronique Levesque‐Tremblay, Maria J. Harrison
Software Mentions: 5
Published: over 3 years ago
10.1038/s41396-019-0570-1
Divergent symbiont communities determine the physiology and nutrition of a reef coral across a light-availability gradient
Cited by: 46
Author(s): Christopher B. Wall, Mario Kaluhiokalani, Brian N. Popp, Megan J. Donahue, Ruth D. Gates
Software Mentions: 5
Published: almost 5 years ago
10.1038/s41598-018-34619-w
A multiscale study of fungal endophyte communities of the foliar endosphere of native rubber trees in Eastern Amazon
Cited by: 28
Author(s): Aline B. M. Vaz, Paula Luize Camargos Fonseca, Fernanda Badotti, Demetra Skaltsas, Luiz Marcelo Ribeiro Tomé, Allefi C. Silva, Mayara C. Cunha, Marco A. Soares, Vera Lúcia dos Santos, Guilherme Oliveira, Priscilla Chaverri, Aristóteles Goés-Neto
Software Mentions: 5
Published: about 6 years ago
10.1038/s41598-020-57798-x
Impact of the early-life skin microbiota on the development of canine atopic dermatitis in a high-risk breed birth cohort
Cited by: 8
Author(s): Sabrina Rodriguez‐Campos, Ana Rostaher, Lena Zwickl, Nina Fischer, Isabelle Brodard, Sara Vidal, Bernd W. Brandt, Claude Favrot, Vincent Perreten
Software Mentions: 5
Published: almost 5 years ago
10.3389/fmicb.2018.01561
A Single Vibrionales 16S rRNA Oligotype Dominates the Intestinal Microbiome in Two Geographically Separated Atlantic cod Populations
Cited by: 16
Author(s): Even Sannes Riiser, Thomas Haverkamp, Ørnulf Borgan, Kjetill S. Jakobsen, Sissel Jentoft, Bastiaan Star
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pone.0212185
Physical environmental conditions determine ubiquitous spatial differentiation of standing plants and seedbanks in Neotropical riparian dry forests
Cited by: 2
Author(s): Alejandra De León Ibarra, Néstor A. Mariano, Valentino Sorani, Gabriel Flores‐Franco, Evodio Rendón Alquicira, Elisabet V. Wehncke
Software Mentions: 5
Published: over 5 years ago
10.1128/mSphere.00534-20
The Fungal Microbiome Is an Important Component of Vineyard Ecosystems and Correlates with Regional Distinctiveness of Wine
Cited by: 47
Author(s): Di Liu, Qinglin Chen, Pangzhen Zhang, Deli Chen, Kate Howell
Software Mentions: 5
Published: about 4 years ago
10.1371/journal.pone.0198452
Large-scale patterns of benthic marine communities in the Brazilian Province
Cited by: 76
Author(s): Anaide W. Aued, Franz Smith, Juan P. Quimbayo, Davi V. Cândido, Guilherme O. Longo, Carlos E. L. Ferreira, Jon D. Witman, Sergio R. Floeter, Bárbara Segal
Software Mentions: 5
Published: over 6 years ago
10.1038/s41598-018-35159-z
Taxon-specific responses to different forestry treatments in a temperate forest
Cited by: 28
Author(s): Zoltán Elek, Bence Kovács, Réka Aszalós, Gergely Boros, Ferenc Samu, Flóra Tinya, Péter Ódor
Software Mentions: 5
Published: about 6 years ago
10.1016/j.ebiom.2021.103538
Airway microbial communities, smoking and asthma in a general population sample
Cited by: 21
Author(s): Elena Turek, Michael J. Cox, Michael Hunter, Jennie Hui, Phillip James, Saffron A.G. Willis‐Owen, Leah Cuthbertson, Alan James, A.W. Musk, Miriam F. Moffatt, William Cookson
Software Mentions: 5
Published: about 3 years ago
10.3389/fmicb.2019.02587
Complementary DNA/RNA-Based Profiling: Characterization of Corrosive Microbial Communities and Their Functional Profiles in an Oil Production Facility
Cited by: 15
Author(s): Silvia J. Salgar-Chaparro, Laura L. Machuca
Software Mentions: 5
Published: about 5 years ago
10.1038/s41396-020-00885-8
Comparative genomics reveals new functional insights in uncultured MAST species
Cited by: 17
Author(s): Aurélie Labarre, Lior David, Francisco Latorre, Guy Leonard, François Bucchini, Aleix Obiol, Corinne Cruaud, Michael E. Sieracki, Olivier Jaillon, Patrick Wincker, Klaas Vandepoele, Ramiro Logares, Ramón Massana
Software Mentions: 5
Published: almost 4 years ago
10.1128/mSphere.00521-18
Marginal Zinc Deficiency and Environmentally Relevant Concentrations of Arsenic Elicit Combined Effects on the Gut Microbiome
Cited by: 32
Author(s): Christopher A. Gaulke, John Rolshoven, Carmen P. Wong, Laurie G. Hudson, Emily Ho, Thomas J. Sharpton
Software Mentions: 5
Published: almost 6 years ago
10.3389/fpls.2019.00214
Root-Associated Fungal Communities From Two Phenologically Contrasting Silver Fir (Abies alba Mill.) Groups of Trees
Cited by: 18
Author(s): Tina Unuk, Tijana Martinović, Domen Finžgar, Nataša Šibanc, Tine Grebenc, Hojka Kraigher
Software Mentions: 5
Published: over 5 years ago
10.1128/mSphere.00104-18
The Microbiome and Metabolome of Preterm Infant Stool Are Personalized and Not Driven by Health Outcomes, Including Necrotizing Enterocolitis and Late-Onset Sepsis
Cited by: 95
Author(s): Stephen Wandro, Stephanie Osborne, Claudia Enriquez, Christine Bixby, Antonio Arrieta, Katrine Whiteson
Software Mentions: 5
Published: over 6 years ago
10.1038/s41396-020-0625-3
Microbial symbionts and ecological divergence of Caribbean sponges: A new perspective on an ancient association
Cited by: 22
Author(s): Christopher Freeman, Cole G. Easson, Kenan O. Matterson, Robert Thacker, David M. Baker, Valerie J. Paul
Software Mentions: 5
Published: over 4 years ago
10.1371/journal.pone.0184515
Unraveling the human salivary microbiome diversity in Indian populations
Cited by: 19
Author(s): Anujit Sarkar, Mark Stoneking, Madhusudan R. Nandineni
Software Mentions: 5
Published: about 7 years ago
10.1371/journal.pone.0236165
Diversity and structure of soil microbiota of the Jinsha earthen relic
Cited by: 4
Author(s): Sheng Yang, Linfeng Wu, Bin Wu, Yizheng Zhang, Haiyan Wang, Xuemei Tan
Software Mentions: 5
Published: over 4 years ago
10.3390/foods9101386
The Use of Less Conventional Meats or Meat with High pH Can Lead to the Growth of Undesirable Microorganisms during Natural Meat Fermentation
Cited by: 13
Author(s): Christina Charmpi, Emiel Niels Van Reckem, Nikoleta Sameli, David Van der Veken, Luc De Vuyst, Frédéric Leroy
Software Mentions: 5
Published: about 4 years ago
10.1128/mBio.00798-21
Manure Microbial Communities and Resistance Profiles Reconfigure after Transition to Manure Pits and Differ from Those in Fertilized Field Soil
Cited by: 10
Author(s): Kimberley V. Sukhum, Rhiannon C. Vargas, Manish Boolchandani, Alaric W. D’Souza, Sanket Patel, Akhil Kesaraju, Gretchen Walljasper, Harshad Hegde, Zhan Ye, Robert K. Valenzuela, Paul Gunderson, Casper Bendixsen, Gautam Dantas, Sanjay Kumar Shukla
Software Mentions: 5
Published: over 3 years ago
10.3390/insects12030219
Ant Diversity and Community Composition in Alpine Tree Line Ecotones
Cited by: 4
Author(s): Elia Guariento, Konrad Fiedler
Software Mentions: 5
Published: over 3 years ago
10.7150/ijbs.37399
Gut microbiome associated with APC gene mutation in patients with intestinal adenomatous polyps
Cited by: 38
Author(s): Sai Liang, Yan Mao, Ming Liao, Yali Xu, Ying‐Chun Chen, Xiaoliang Huang, Chuangyi Wei, Changtao Wu, Qiuyan Wang, Xiaoyan Pan, Weizhong Tang
Software Mentions: 5
Published: almost 5 years ago
10.1038/s41598-019-43268-6
Structure and stability of the coral microbiome in space and time
Cited by: 60
Author(s): Courtney M. Dunphy, Tarik C. Gouhier, Nathaniel D. Chu, Steven V. Vollmer
Software Mentions: 5
Published: over 5 years ago
10.1002/ece3.5711
Site‐specific responses of foliar fungal microbiomes to nutrient addition and herbivory at different spatial scales
Cited by: 15
Author(s): Candice Y. Lumibao, Elizabeth T. Borer, Bradford Condon, Linda L. Kinkel, Georgiana May, Eric W. Seabloom
Software Mentions: 5
Published: about 5 years ago
10.1093/femsec/fiaa016
Total RNA sequencing reveals multilevel microbial community changes and functional responses to wood ash application in agricultural and forest soil
Cited by: 25
Author(s): Toke Bang‐Andreasen, Muhammad Zohaib Anwar, Anders Lanzén, Rasmus Kjøller, Regin Rønn, Flemming Ekelund, Carsten Suhr Jacobsen
Software Mentions: 5
Published: almost 5 years ago
10.1128/mBio.02637-20
Seed-Derived Microbial Colonization of Wild Emmer and Domesticated Bread Wheat ( <i>Triticum dicoccoides</i> and <i>T. aestivum</i> ) Seedlings Shows Pronounced Differences in Overall Diversity and Composition
Cited by: 34
Author(s): Ezgi Özkurt, M. Amine Hassani, Uğur Sesiz, Sven Künzel, Tal Dagan, Hakan Özkan, Eva H. Stukenbrock
Software Mentions: 5
Published: almost 4 years ago
10.1038/s41396-021-00923-z
Maize germplasm chronosequence shows crop breeding history impacts recruitment of the rhizosphere microbiome
Cited by: 38
Author(s): Alonso Favela, Martin Bohn, Angela D. Kent
Software Mentions: 5
Published: over 3 years ago
10.1128/mBio.00180-20
Systemic Inflammatory Mediators Are Effective Biomarkers for Predicting Adverse Outcomes in Clostridioides difficile Infection
Cited by: 16
Author(s): Michael G. Dieterle, Rosemary Putler, D. Alexander Perry, Anitha Menon, Lisa Abernathy-Close, Naomi Perlman, Aline Penkevich, Alex Standke, Micah Keidan, Kimberly C. Vendrov, Ingrid L. Bergin, Vincent B. Young, Krishna Rao
Software Mentions: 5
Published: over 4 years ago
10.1038/s41598-019-44338-5
In-feed bacitracin methylene disalicylate modulates the turkey microbiota and metabolome in a dose-dependent manner
Cited by: 25
Author(s): Timothy A. Johnson, Matthew J. Sylte, Torey Looft
Software Mentions: 5
Published: over 5 years ago
10.1128/mBio.03186-19
Fecal Metabolomic Signatures in Colorectal Adenoma Patients Are Associated with Gut Microbiota and Early Events of Colorectal Cancer Pathogenesis
Cited by: 86
Author(s): Minsuk Kim, Emily Vogtmann, David A. Ahlquist, Mary E. Devens, John B. Kisiel, William R. Taylor, Bryan A. White, Vanessa L. Hale, Jaeyun Sung, Nicholas Chia, Rashmi Sinha, Jun Chen
Software Mentions: 5
Published: over 4 years ago
10.3390/insects11060334
Multiscale Determinants Drive Parasitization of Drosophilidae by Hymenopteran Parasitoids in Agricultural Landscapes
Cited by: 7
Author(s): Valeria Trivellone, Michela Meier, Corrado Cara, Lucia Pollini Paltrinieri, Félix Gugerli, Marco Moretti, Sarah Wolf, Jana Collatz
Software Mentions: 5
Published: over 4 years ago
10.3389/fmicb.2017.01574
Culture Media and Individual Hosts Affect the Recovery of Culturable Bacterial Diversity from Amphibian Skin
Cited by: 25
Author(s): Daniel Medina, Jenifer B. Walke, Zachary Gajewski, Matthew H. Becker, Meredith C. Swartwout, Lisa K. Belden
Software Mentions: 5
Published: over 7 years ago
10.1172/jci.insight.143058
Targeted DNA methylation profiling reveals epigenetic signatures in peanut allergy
Cited by: 26
Author(s): Xiaoying Zhou, Xiaorui Han, Shu‐Chen Lyu, Bryan Bunning, Laurie Kost, Iris Chang, Shu Cao, Vanitha Sampath, Kari Nadeau
Software Mentions: 5
Published: over 3 years ago
10.1038/s41598-017-00223-7
Weaning age influences the severity of gastrointestinal microbiome shifts in dairy calves
Cited by: 78
Author(s): S. J. Meale, S. C. Li, Paula Azevedo, Hooman Derakhshani, T.J. DeVries, J.C. Plaizier, M.A. Steele, Ehsan Khafipour
Software Mentions: 5
Published: over 7 years ago
10.1371/journal.pone.0183906
Flat and complex temperate reefs provide similar support for fish: Evidence for a unimodal species-habitat relationship
Cited by: 39
Author(s): Avery B. Paxton, Emily A. Pickering, Alyssa M. Adler, James C. Taylor, Charles H. Peterson
Software Mentions: 5
Published: about 7 years ago
10.3390/insects10110391
Do Host Plant and Associated Ant Species Affect Microbial Communities in Myrmecophytes?
Cited by: 5
Author(s): Mario X. Ruiz-González, Céline Leroy, Alain Déjean, Hervé Gryta, Patricia Jargeat, Angelo D. Armijos Carrión, Jérôme Orivel
Software Mentions: 5
Published: about 5 years ago
10.12688/f1000research.17706.3
Health and saliva microbiomes of a semi-urbanized indigenous tribe in Peninsular Malaysia
Cited by: 5
Author(s): Li-Fang Yeo, Farhang Aghakhanian, J. Tan, Han Ming Gan, Maude E. Phipps
Software Mentions: 5
Published: over 5 years ago
10.1002/ece3.7755
Legacy of pre‐eruption vegetation affects ground‐dwelling arthropod communities after different types of volcanic disturbance
Cited by: 2
Author(s): Kyohei Iida, Daisuke Hayasaka, Yuka Suzuki, Tatsuo Uchida, Takuo Sawahata, Koya Hashimoto
Software Mentions: 5
Published: over 3 years ago
10.3390/d12060245
Nourished, Exposed Beaches Exhibit Altered Sediment Structure and Meiofaunal Communities
Cited by: 8
Author(s): Stephen R. Fegley, Julian P. Smith, Douglas E. Johnson, Amelia U. Schirmer, Jeremiah Daniel JonesBoggs, Austin Edmonds, Joseph Bursey
Software Mentions: 5
Published: over 4 years ago
10.3389/fmicb.2021.616828
Soil Texture, Sampling Depth and Root Hairs Shape the Structure of ACC Deaminase Bacterial Community Composition in Maize Rhizosphere
Cited by: 19
Author(s): Lucie Gebauer, Marie-Lara Bouffaud, Minh Ganther, Bunlong Yim, Doris Vetterlein, Kornelia Smalla, François Buscot, Anna Heintz‐Buschart, Mika Tarkka
Software Mentions: 5
Published: almost 4 years ago
10.1007/s11356-019-06245-0
The effect of railways on bird diversity in farmland
Cited by: 9
Author(s): Joanna Kajzer‐Bonk, Piotr Skórka, Maciej Bonk, Magdalena Lenda, Elżbieta Rożej-Pabijan, Marta Wantuch, Dawid Moroń
Software Mentions: 5
Published: about 5 years ago
10.1002/ece3.6219
Keeping it cool: Soil sample cold pack storage and DNA shipment up to 1 month does not impact metabarcoding results
Cited by: 17
Author(s): Camille S. Delavaux, James D. Bever, Erin M. Karppinen, Luke D. Bainard
Software Mentions: 5
Published: over 4 years ago
10.3389/fmicb.2018.00675
Gut Microbiota Profiling and Gut–Brain Crosstalk in Children Affected by Pediatric Acute-Onset Neuropsychiatric Syndrome and Pediatric Autoimmune Neuropsychiatric Disorders Associated With Streptococcal Infections
Cited by: 76
Author(s): Andrea Quagliariello, Federica Del Chierico, Alessandra Russo, Sofia Reddel, Giulia Conte, Loris Riccardo Lopetuso, Gianluca Ianiro, Bruno Dallapiccola, Francesco Cardona, Antonio Gasbarrini, Lorenza Putignani
Software Mentions: 5
Published: over 6 years ago
10.3390/jof6040244
Effect of Host, Environment and Fungal Growth on Fungal Leaf Endophyte Communities in Taiwan
Cited by: 7
Author(s): Yu‐Ling Huang
Software Mentions: 5
Published: about 4 years ago
10.1038/s41598-019-46923-0
The Predominant Oral Microbiota Is Acquired Early in an Organized Pattern
Cited by: 63
Author(s): Rosalyn Sulyanto, Zachary A. Thompson, Clifford J. Beall, Eugene J. Leys, Ann L. Griffen
Software Mentions: 5
Published: over 5 years ago
10.3389/fmicb.2020.02032
Berry Polyphenols and Fibers Modulate Distinct Microbial Metabolic Functions and Gut Microbiota Enterotype-Like Clustering in Obese Mice
Cited by: 75
Author(s): Maria Carolina Rodríguez-Daza, Marcela Roquim, Stéphanie Dudonné, Geneviève Pilon, Émile Lévy, André Marette, Denis Roy, Yves Desjardins
Software Mentions: 5
Published: about 4 years ago
10.3389/fmicb.2020.00681
Rhodobacterales and Rhizobiales Are Associated With Stony Coral Tissue Loss Disease and Its Suspected Sources of Transmission
Cited by: 82
Author(s): Stephanie M. Rosales, Abigail S. Clark, Lindsay K. Huebner, Rob Ruzicka, Erinn M. Muller
Software Mentions: 5
Published: over 4 years ago
10.1111/1462-2920.15484
Effect of salinity on cable bacteria species composition and diversity
Cited by: 19
Author(s): Ann‐Sofie Dam, Ian P. G. Marshall, Nils Risgaard‐Petersen, Laurine D. W. Burdorf, Ugo Marzocchi
Software Mentions: 5
Published: over 3 years ago
10.1038/s41598-021-83524-2
Comparative analysis of the alveolar microbiome in COPD, ECOPD, Sarcoidosis, and ILD patients to identify respiratory illnesses specific microbial signatures
Cited by: 37
Author(s): Shashank Gupta, Malini Shariff, Gaura Chaturvedi, Arpit Sharma, Nitin Goel, Monika Yadav, Martin Steen Mortensen, Søren J. Sørensen, Mitali Mukerji, Nar Singh Chauhan
Software Mentions: 5
Published: almost 4 years ago
10.3389/fmicb.2020.02023
Microbial Communities of the Shallow-Water Hydrothermal Vent Near Naples, Italy, and Chemosynthetic Symbionts Associated With a Free-Living Marine Nematode
Cited by: 12
Author(s): Laure Bellec, Marie-Anne Cambon-Bonavita, Lucile Durand, Johanne Aubé, Nicolas Gayet, Roberto Sandulli, Christophe Brandily, Daniela Zeppilli
Software Mentions: 5
Published: over 4 years ago
10.1111/1462-2920.14498
Gut microbiota in patients after surgical treatment for colorectal cancer
Cited by: 21
Author(s): Ye Jin, Yang Liu, Lei Zhao, Fuya Zhao, Jing Feng, Shengda Li, Huinan Chen, Jiayu Sun, Bihai Zhu, Rui Geng, Yunwei Wei
Software Mentions: 5
Published: almost 6 years ago
10.1038/s41598-019-49956-7
Gut microbiome comparability of fresh-frozen versus stabilized-frozen samples from hospitalized patients using 16S rRNA gene and shotgun metagenomic sequencing
Cited by: 14
Author(s): Emma Elizabeth Ilett, Mette Jørgensen, Marc Noguera‐Julian, Gedske Daugaard, Daniel D. Murray, Marie Helleberg, Roger Paredes, Jens D Lundgren, Henrik Sengeløv, Cameron Ross MacPherson
Software Mentions: 5
Published: about 5 years ago
10.1371/journal.pone.0245857
Functional capacities of microbial communities to carry out large scale geochemical processes are maintained during ex situ anaerobic incubation
Cited by: 9
Author(s): Rachel M. Wilson, Ahmed A. Zayed, Kelsey B. Crossen, Ben J. Woodcroft, Malak M. Tfaily, Joanne B. Emerson, Nicole Raab, S. B. Hodgkins, B. A. Verbeke, Gene W. Tyson, Patrick Crill, S. R. Saleska, Jeffrey P. Chanton, V. I. Rich
Software Mentions: 5
Published: over 3 years ago
10.3389/fmicb.2020.01663
Cultivation and Genomics Prove Long-Term Colonization of Donor’s Bifidobacteria in Recurrent Clostridioides difficile Patients Treated With Fecal Microbiota Transplantation
Cited by: 7
Author(s): Hanne Jouhten, Aki Ronkainen, Juhani Aakko, Seppo Salminen, Eero Mattila, Perttu Arkkila, Reetta Satokari
Software Mentions: 5
Published: over 4 years ago
10.1128/mBio.02635-19
Time after Time: Temporal Variation in the Effects of Grass and Forb Species on Soil Bacterial and Fungal Communities
Cited by: 53
Author(s): S. Emilia Hannula, Anna M. Kielak, Katja Steinauer, Martine Huberty, Renske Jongen, Jonathan R. De Long, Robin Heinen, T. Martijn Bezemer
Software Mentions: 5
Published: almost 5 years ago
10.1111/1462-2920.14862
Microbial communities of the Laurentian Great Lakes reflect connectivity and local biogeochemistry
Cited by: 31
Author(s): Sara F. Paver, Ryan J. Newton, Maureen L. Coleman
Software Mentions: 5
Published: almost 5 years ago
10.1080/19490976.2021.1911571
Metagenomic analysis of mother-infant gut microbiome reveals global distinct and shared microbial signatures
Cited by: 16
Author(s): Shaopu Wang, Shuqin Zeng, M.G. Egan, Paul Cherry, Conall Strain, Emilene Morais, Patrick Boyaval, C. Anthony Ryan, Eugene M. Dempsey, R. Paul Ross, Catherine Stanton
Software Mentions: 5
Published: almost 4 years ago
10.1371/journal.pone.0248485
16S rRNA gene amplicon-based metagenomic analysis of bacterial communities in the rhizospheres of selected mangrove species from Mida Creek and Gazi Bay, Kenya
Cited by: 21
Author(s): Edith M. Muwawa, Chinedu Christopher Obieze, Huxley Mae Makonde, Joyce Jefwa, James H. P. Kahindi, Damase Khasa
Software Mentions: 5
Published: over 3 years ago
10.1111/1462-2920.15114
Heterogeneity of the rice microbial community of the Chinese centuries‐old Honghe Hani rice terraces system
Cited by: 8
Author(s): Pascal Alonso, Laurence Blondin, Pierre Gladieux, Frédéric Mahe, Hervé Sanguin, Romain Ferdinand, Denis Filloux, Érick Desmarais, Frédérique Cerqueira, Baocheng Jin, Huichuan Huang, Xiahong He, Jean-Benoît Morel, Darren P. Martin, Philippe Roumagnac, Christian Vernière
Software Mentions: 5
Published: over 4 years ago
10.3389/fpls.2021.694727
The Plastid-Localized AtFtsHi3 Pseudo-Protease of Arabidopsis thaliana Has an Impact on Plant Growth and Drought Tolerance
Cited by: 3
Author(s): Laxmi S. Mishra, Sanatkumar Mishra, Daniel Caddell, Devin Coleman‐Derr, Christiane Funk
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pone.0049263
Nocturnal Homing: Learning Walks in a Wandering Spider?
Cited by: 18
Author(s): Thomas Nørgaard, Yakir Luc Gagnon, Eric J. Warrant
Software Mentions: 5
Published: about 12 years ago
10.3389/fpls.2019.00643
Shifts in Ectomycorrhizal Fungal Communities and Exploration Types Relate to the Environment and Fine-Root Traits Across Interior Douglas-Fir Forests of Western Canada
Cited by: 43
Author(s): Camille E. Defrenne, Timothy J. Philpott, Shannon H. A. Guichon, W. Jean Roach, Brian J. Pickles, Suzanne W. Simard
Software Mentions: 5
Published: over 5 years ago
10.1038/s41598-021-82988-6
Insect reproductive behaviors are important mediators of carrion nutrient release into soil
Cited by: 2
Author(s): Brooke K. Woelber-Kastner, Serita D. Frey, Daniel R. Howard, Carrie L. Hall
Software Mentions: 5
Published: almost 4 years ago
10.3389/fpls.2018.01001
Environmental Characteristics and Anthropogenic Impact Jointly Modify Aquatic Macrophyte Species Diversity
Cited by: 24
Author(s): Merja Elo, Janne Alahuhta, Antti Kanninen, Kristian Meissner, Katri Seppälä, Mikko Mönkkönen
Software Mentions: 5
Published: over 6 years ago
10.1038/s41426-018-0202-2
Altered gut microbiota after traumatic splenectomy is associated with endotoxemia
Cited by: 15
Author(s): Hua Zhu, Yang Liu, Shengda Li, Ye Jin, Lei Zhao, Fuya Zhao, Jing Feng, Yan Wang, Yunwei Wei
Software Mentions: 5
Published: almost 6 years ago
10.3390/ijms20010059
We Are What We Eat: A Stoichiometric and Ecometabolomic Study of Caterpillars Feeding on Two Pine Subspecies of Pinus sylvestris
Cited by: 8
Author(s): Albert Rivas‐Ubach, Josep Peñuelas, José A. Hódar, Michal Oravec, Ljiljana Paša‐Tolić, Otmar Urban, Jordi Sardans
Software Mentions: 5
Published: almost 6 years ago
10.1038/s41598-020-80557-x
Gut microbiome is affected by inter-sexual and inter-seasonal variation in diet for thick-billed murres (Uria lomvia)
Cited by: 33
Author(s): Esteban Góngora, Kyle H. Elliott, Lyle G. Whyte
Software Mentions: 5
Published: almost 4 years ago
10.3389/fpls.2019.01018
Plant Diversity and Fertilizer Management Shape the Belowground Microbiome of Native Grass Bioenergy Feedstocks
Cited by: 17
Author(s): Daniel Revillini, Gail W. T. Wilson, R. M. Miller, Ryan C. Lancione, Nancy Collins Johnson
Software Mentions: 5
Published: over 5 years ago
10.1002/ecy.3201
Negative effects of an allelopathic invader on AM fungal plant species drive community‐level responses
Cited by: 14
Author(s): Morgan D. Roche, Ian S. Pearse, Lalasia Bialic‐Murphy, Stephanie N. Kivlin, Helen R. Sofaer, Susan Kalisz
Software Mentions: 5
Published: about 4 years ago
10.1002/ece3.6094
Neighboring trees regulate the root‐associated pathogenic fungi on the host plant in a subtropical forest
Cited by: 6
Author(s): Ke-Ke Cheng, Shixiao Yu
Software Mentions: 5
Published: over 4 years ago
10.1038/s41598-021-84497-y
Gut microbiota resilience in horse athletes following holidays out to pasture
Cited by: 15
Author(s): Núria Mach, Léa Lansade, David Bars-Cortina, Sophie Dhorne–Pollet, Aline Foury, Marie‐Pierre Moisan, Alice Ruet
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pone.0214372
Patterns of funerary variability, diet, and developmental stress in a Celtic population from NE Italy (3rd-1st c BC)
Cited by: 12
Author(s): Zita Laffranchi, Giuliana Cavalieri Manasse, Luciano Salzani, Marco Milella
Software Mentions: 5
Published: over 5 years ago
10.3389/fonc.2021.650026
Fecal Microbiota and Gut Microbe-Derived Extracellular Vesicles in Colorectal Cancer
Cited by: 33
Author(s): Jihye Park, Nam-Eun Kim, Hyuk Yoon, Cheol Min Shin, Nayoung Kim, Dong Hoon Lee, Jae Yong Park, Chang Hwan Choi, Jae Gyu Kim, Eui Chong Kim, Tae-Seop Shin, Jinho Yang, Young Soo Park
Software Mentions: 5
Published: about 3 years ago
10.1038/s41598-021-89926-6
Smoke from regional wildfires alters lake ecology
Cited by: 13
Author(s): Facundo Scordo, Sudeep Chandra, Erin Suenaga, Suzanne J. Kelson, Joshua Culpepper, Lucia Scaff, Flavia Tromboni, Timothy J. Caldwell, Carina Seitz, Juan Esteban Fiorenza, Craig E. Williamson, Steven Sadro, Kevin C. Rose, Simon R. Poulson
Software Mentions: 5
Published: over 3 years ago
10.1002/ece3.7299
Flexibility in Red Sea <i>Tridacna maxima</i>‐Symbiodiniaceae associations supports environmental niche adaptation
Cited by: 7
Author(s): Susann Rossbach, Benjamin C. C. Hume, Anny Cárdenas, Gabriela Perna, Christian R. Voolstra, Carlos M. Duarte
Software Mentions: 5
Published: over 3 years ago
10.1007/s00442-021-04861-7
From forest to fragment: compositional differences inside coastal forest moth assemblages and their environmental correlates
Cited by: 1
Author(s): Britta Uhl, Mirko Wölfling, Konrad Fiedler
Software Mentions: 5
Published: almost 4 years ago
10.1002/ece3.2454
Root exudate cocktails: the link between plant diversity and soil microorganisms?
Cited by: 154
Author(s): Katja Steinauer, Antonis Chatzinotas, Nico Eisenhauer
Software Mentions: 5
Published: about 8 years ago
10.1002/ece3.6477
Advancing biodiversity assessments with environmental DNA: Long‐read technologies help reveal the drivers of Amazonian fungal diversity
Cited by: 23
Author(s): Camila Duarte Ritter, Micah Dunthorn, Sten Anslan, Vítor Xavier de Lima, Leho Tedersoo, R. Henrik Nilsson, Alexandre Antonelli
Software Mentions: 5
Published: over 4 years ago
10.3389/fpls.2020.00203
Influences of Climate on Phyllosphere Endophytic Bacterial Communities of Wild Poplar
Cited by: 19
Author(s): Andrea Firrincieli, Mahsa Khorasani, A. Carolin Frank, Sharon L. Doty
Software Mentions: 5
Published: over 4 years ago
10.1038/s41598-019-51142-8
Alterations to the Gastrointestinal Microbiome Associated with Methamphetamine Use among Young Men who have Sex with Men
Cited by: 35
Author(s): Ryan Cook, Jennifer A. Fulcher, Nicole H. Tobin, Fan Li, Dong Hoon Lee, Cora L. Woodward, Marjan Javanbakht, Ron Brookmeyer, Steven Shoptaw, Robert Bolan, Grace M. Aldrovandi, Pamina M. Gorbach
Software Mentions: 5
Published: about 5 years ago
10.3389/fmicb.2021.738129
Taxonomic Compositions and Co-occurrence Relationships of Protists in Bulk Soil and Rhizosphere of Soybean Fields in Different Regions of China
Cited by: 3
Author(s): Jun Zhang, Pengcheng Xing, Mengyu Niu, Gehong Wei, Peng Shi
Software Mentions: 5
Published: about 3 years ago
10.1038/s41598-019-53623-2
A Plant Growth-Promoting Microbial Soil Amendment Dynamically Alters the Strawberry Root Bacterial Microbiome
Cited by: 41
Author(s): Shijie Deng, Heidi M.-L. Wipf, Grady Pierroz, Theodore K. Raab, Rajnish Khanna, Devin Coleman‐Derr
Software Mentions: 5
Published: almost 5 years ago
10.3390/nu13093289
Analyzing Type 2 Diabetes Associations with the Gut Microbiome in Individuals from Two Ethnic Backgrounds Living in the Same Geographic Area
Cited by: 13
Author(s): Manon Balvers, Mélanie Deschasaux, Bert‐Jan H. van den Born, Koos Zwinderman, Max Nieuwdorp, Evgeni Levin
Software Mentions: 5
Published: about 3 years ago
10.1371/journal.pone.0112856
Hydrologic Landscape Regionalisation Using Deductive Classification and Random Forests
Cited by: 23
Author(s): Stuart C. Brown, Rebecca E. Lester, Vincent L. Versace, Jonathon Fawcett, L. Laurenson
Software Mentions: 5
Published: about 10 years ago
10.1002/ece3.4086
Canopy bird assemblages are less influenced by habitat age and isolation than understory bird assemblages in Neotropical secondary forest
Cited by: 20
Author(s): Tom Bradfer‐Lawrence, Nick Gardner, Daisy H. Dent
Software Mentions: 5
Published: over 6 years ago
10.1002/ece3.3404
Pellets of proof: First glimpse of the dietary composition of adult odonates as revealed by metabarcoding of feces
Cited by: 62
Author(s): Kari Kaunisto, Tomas Roslin, Ilari E. Sääksjärvi, Eero J. Vesterinen
Software Mentions: 5
Published: about 7 years ago
10.3390/nu12092800
Whole Blueberry and Isolated Polyphenol-Rich Fractions Modulate Specific Gut Microbes in an In Vitro Colon Model and in a Pilot Study in Human Consumers
Cited by: 25
Author(s): Alexandra Ntemiri, Tarini Shankar Ghosh, Molly E. Gheller, Tam Tran, Jamie Blum, Paola Pellanda, Klára Vlčková, Marta C Neto, Amy B. Howell, Anna Thalacker‐Mercer, Paul W. O’Toole
Software Mentions: 5
Published: about 4 years ago
10.3389/fpls.2013.00361
Arbuscular mycorrhizal fungi alter above- and below-ground chemical defense expression differentially among Asclepias species
Cited by: 31
Author(s): Rachel L. Vannette, Mark D. Hunter, Sergio Rasmann
Software Mentions: 5
Published: almost 12 years ago
10.1038/s41598-020-59111-2
Relative roles of biological and physical processes influencing coral recruitment during the lag phase of reef community recovery
Cited by: 19
Author(s): Marine Gouezo, Dawnette Olsudong, Katharina Fabricius, Peter Lynton Harrison, Yimnang Golbuu, Christopher Doropoulos
Software Mentions: 5
Published: almost 5 years ago
10.1038/s41598-021-91425-7
Establishment and assessment of an amplicon sequencing method targeting the 16S-ITS-23S rRNA operon for analysis of the equine gut microbiome
Cited by: 17
Author(s): Yuta Kinoshita, Hidekazu Niwa, Eri Uchida‐Fujii, Toshio Nukada
Software Mentions: 5
Published: over 3 years ago
10.1038/s41598-021-91399-6
Bacillus amyloliquefaciens FH-1 significantly affects cucumber seedlings and the rhizosphere bacterial community but not soil
Cited by: 15
Author(s): Jingjing Wang, Sheng Xu, Rong Yang, Wei Zhao, Dan Zhu, Xiaoxia Zhang, Zhiyong Huang
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pone.0198342
Characterization of the fecal and mucosa-associated microbiota in dogs with colorectal epithelial tumors
Cited by: 25
Author(s): Kristin Marie Valand Herstad, Aina Elisabeth Fossum Moen, John Christian Gaby, Lars Moe, Ellen Skancke
Software Mentions: 5
Published: over 6 years ago
10.1002/ece3.7850
Floral attraction and flower visitors of a subcanopy, tropical rainforest tree, <i>Fontainea picrosperma</i>
Cited by: 2
Author(s): Elektra L. Grant, Helen M. Wallace, Peter Brooks, Chris J. Burwell, Paul Reddell, Steven M. Ogbourne
Software Mentions: 5
Published: over 3 years ago