cran: PERMANOVA | Projects | Ecosyste.ms: Papers

10.1093/gigascience/giaa043

Antibiotic resistomes discovered in the gut microbiomes of Korean swine and cattle
Cited by: 27
Author(s): Suk-Kyung Lim, Dong‐Jun Kim, Dong Chan Moon, Youna Cho, Mina Rho
Software Mentions: 5
Published: over 6 years ago

10.1093/molbev/msz114

The Legacy of Sexual Ancestors in Phenotypic Variability, Gene Expression, and Homoeolog Regulation of Asexual Hybrids and Polyploids
Cited by: 20
Author(s): Oldřich Bartoš, Jan Röslein, Jan Kotusz, Jan Pačes, Ladislav Pekárik, Miloslav Petrtýl, Karel Halačka, Eva Kašparová, Jan Mendel, Alicja Boroń, Dorota Juchno, Anna Leska, Olga Jabłońska, Vladimı́r Beneš, Monika Šídová, Karel Janko
Software Mentions: 5
Published: over 7 years ago

10.1002/ece3.6133

Changes in tree community structure in defaunated forests are not driven only by dispersal limitation
Cited by: 6
Author(s): Kirstie Hazelwood, C. E. Timothy Paine, Fernando H. Cornejo Valverde, Elizabeth G. Pringle, Harald Beck, John Terborgh
Software Mentions: 5
Published: over 6 years ago

10.1111/mec.14581

Feather mites play a role in cleaning host feathers: New insights from <scp>DNA</scp> metabarcoding and microscopy
Cited by: 42
Author(s): Jorge Doña, H. C. Proctor, David Serrano, Kevin P. Johnson, Arnika Oddy van Oploo, José C. Huguet‐Tapia, Marina S. Ascunce, Roger Jovani
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0183906

Flat and complex temperate reefs provide similar support for fish: Evidence for a unimodal species-habitat relationship
Cited by: 39
Author(s): Avery B. Paxton, Emily A. Pickering, Alyssa M. Adler, James C. Taylor, Charles H. Peterson
Software Mentions: 5
Published: almost 9 years ago

10.1016/j.gpb.2018.04.008

Agricultural Risk Factors Influence Microbial Ecology in Honghu Lake
Cited by: 25
Author(s): Maozhen Han, Melissa Dsouza, Chunyu Zhou, Hongjun Li, Junqian Zhang, Chaoyun Chen, Qi Yao, Chunrong Zhong, Hao Zhou, Jack A. Gilbert, Zhi Wen, Kang Ning
Software Mentions: 5
Published: over 7 years ago

10.1111/mec.14779

How much is enough? Effects of technical and biological replication on metabarcoding dietary analysis
Cited by: 74
Author(s): Vanessa A. Mata, Hugo Rebelo, Francisco Amorim, Gary F. McCracken, Simon Jarman, Pedro Beja
Software Mentions: 5
Published: about 8 years ago

10.3390/nu11102348

Specific Wheat Fractions Influence Hepatic Fat Metabolism in Diet-Induced Obese Mice
Cited by: 6
Author(s): Daniela Gräf, Karolin Weitkunat, Andreas Dötsch, Gerhard Liebisch, Maik Döring, Ralf Krüger, Elisabeth Vatareck, Elena von Coburg, Gunnar Loh, Bernhard Watzl
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0248485

16S rRNA gene amplicon-based metagenomic analysis of bacterial communities in the rhizospheres of selected mangrove species from Mida Creek and Gazi Bay, Kenya
Cited by: 21
Author(s): Edith M. Muwawa, Chinedu Christopher Obieze, Huxley Mae Makonde, Joyce Jefwa, James H. P. Kahindi, Damase Khasa
Software Mentions: 5
Published: over 5 years ago

10.1111/1755-0998.13013

Evaluating next‐generation sequencing (NGS) methods for routine monitoring of wild bees: Metabarcoding, mitogenomics or NGS barcoding
Cited by: 18
Author(s): Morgan Gueuning, Dominik Ganser, Simon Blaser, Matthias Albrecht, Eva Knop, Christophe Praz, Juerg E. Frey
Software Mentions: 5
Published: over 7 years ago

10.3390/nu13093013

Composition of the Gut Microbiome Influences Production of Sulforaphane-Nitrile and Iberin-Nitrile from Glucosinolates in Broccoli Sprouts
Cited by: 11
Author(s): John A. Bouranis, Laura M. Beaver, Jaewoo Choi, Carmen P. Wong, Duo Jiang, Thomas J. Sharpton, Jan F. Stevens, Emily Ho
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12967-019-1880-9

Timing gone awry: distinct tumour suppressive and oncogenic roles of the circadian clock and crosstalk with hypoxia signalling in diverse malignancies
Cited by: 28
Author(s): Wai Hoong Chang, Alvina G. Lai
Software Mentions: 5
Published: over 7 years ago

10.1186/s13059-021-02463-3

Deterministic transition of enterotypes shapes the infant gut microbiome at an early age
Cited by: 50
Author(s): Liwen Xiao, Jinfeng Wang, Jiayong Zheng, Xiaoqing Li, Fangqing Zhao
Software Mentions: 5
Published: almost 5 years ago

10.1186/s13059-021-02401-3

Detection of cell-free microbial DNA using a contaminant-controlled analysis framework
Cited by: 18
Author(s): Enrique Zozaya‐Valdés, Stephen Q. Wong, Jeanette Raleigh, Athena Hatzimihalis, Sarah Ftouni, Anthony T. Papenfuss, Shahneen Sandhu, Mark A. Dawson, Sarah‐Jane Dawson
Software Mentions: 5
Published: about 5 years ago

10.1186/s13059-019-1831-z

Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity
Cited by: 83
Author(s): Robert C. Kaplan, Zheng Wang, Mykhaylo Usyk, Daniela Sotres-Álvarez, Martha L. Daviglus, Neil Schneiderman, Gregory A. Talavera, Marc D. Gellman, Bharat Thyagarajan, Jee Young Moon, Yoshiki Vázquez-Baeza, Daniel McDonald, Jessica Williams-Nguyen, Michael C. Wu, Kari E. North, Justin P. Shaffer, Christopher C. Sollecito, Qibin Qi, Carmen R. Isasi, Tao Wang, Rob Knight, Robert D. Burk
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41598-021-91399-6

Bacillus amyloliquefaciens FH-1 significantly affects cucumber seedlings and the rhizosphere bacterial community but not soil
Cited by: 15
Author(s): Jingjing Wang, Sheng Xu, Rong Yang, Wei Zhao, Dan Zhu, Xiaoxia Zhang, Zhiyong Huang
Software Mentions: 5
Published: about 5 years ago

10.1002/pld3.122

Metabolomics of sorghum roots during nitrogen stress reveals compromised metabolic capacity for salicylic acid biosynthesis
Cited by: 27
Author(s): Amy M. Sheflin, Dawn Chiniquy, Chaohui Yuan, Emily Goren, Indrajit Kumar, Max Braud, Thomas P. Brutnell, Andrea L. Eveland, Susannah G. Tringe, Peng Liu, Stephen Kresovich, Ellen L. Marsh, Daniel P. Schachtman, Jessica E. Prenni
Software Mentions: 5
Published: over 7 years ago

10.1053/j.gastro.2020.08.007

Alterations in Intestinal Microbiota of Children With Celiac Disease at the Time of Diagnosis and on a Gluten-free Diet
Cited by: 44
Author(s): Konstantina Zafeiropoulou, Ben Nichols, Mary Mackinder, Olga Biskou, Eleni Rizou, Antonia Karanikolou, Caspar Clark, Evan G. Buchanan, Tracey Cardigan, H. J. Duncan, David Wands, Julie A. Russell, Richard Hansen, Richard K. Russell, Paraic McGrogan, Christine Edwards, Umer Zeeshan Ijaz, Konstantinos Gerasimidis
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0198342

Characterization of the fecal and mucosa-associated microbiota in dogs with colorectal epithelial tumors
Cited by: 25
Author(s): Kristin Marie Valand Herstad, Aina Elisabeth Fossum Moen, John Christian Gaby, Lars Moe, Ellen Skancke
Software Mentions: 5
Published: about 8 years ago

10.3389/fvets.2021.654927

Association of Broiler Litter Microbiome Composition and Campylobacter Isolation
Cited by: 7
Author(s): Robert Valeris-Chacín, Maria Pieters, Hyun Seok Hwang, Timothy J. Johnson, Randall S. Singer
Software Mentions: 5
Published: about 5 years ago

10.3389/fvets.2019.00260

A Microbiomic Analysis of a Pasture-Raised Broiler Flock Elucidates Foodborne Pathogen Ecology Along the Farm-To-Fork Continuum
Cited by: 16
Author(s): Michael J. Rothrock, Aude Locatelli, Kristina M. Feye, Andrew J Caudill, Jean Guard, Kelli L. Hiett, Steven C. Ricke
Software Mentions: 5
Published: about 7 years ago

10.3389/fvets.2020.00255

Toward Antibiotic Stewardship: Route of Antibiotic Administration Impacts the Microbiota and Resistance Gene Diversity in Swine Feces
Cited by: 24
Author(s): Nicole Ricker, Julian Trachsel, Phillip Colgan, Jennifer Jones, Jinlyung Choi, Jaejin Lee, Johann F. Coetzee, Adina Howe, Susan L. Brockmeier, Crystal L. Loving, Heather K. Allen
Software Mentions: 5
Published: over 6 years ago

10.3390/microorganisms8060875

Recovery of Vaginal Microbiota after Standard Treatment for Bacterial Vaginosis Infection: An Observational Study
Cited by: 16
Author(s): Liisa Lehtoranta, Ashley A. Hibberd, Jenni Reimari, Jouni Junnila, Nicolas Yeung, Johanna Maukonen, G. Crawford, Arthur C. Ouwehand
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-021-89926-6

Smoke from regional wildfires alters lake ecology
Cited by: 13
Author(s): Facundo Scordo, Sudeep Chandra, Erin Suenaga, Suzanne J. Kelson, Joshua Culpepper, Lucia Scaff, Flavia Tromboni, Timothy J. Caldwell, Carina Seitz, Juan Esteban Fiorenza, Craig E. Williamson, Steven Sadro, Kevin C. Rose, Simon R. Poulson
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2020.02023

Microbial Communities of the Shallow-Water Hydrothermal Vent Near Naples, Italy, and Chemosynthetic Symbionts Associated With a Free-Living Marine Nematode
Cited by: 12
Author(s): Laure Bellec, Marie-Anne Cambon-Bonavita, Lucile Durand, Johanne Aubé, Nicolas Gayet, Roberto Sandulli, Christophe Brandily, Daniela Zeppilli
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2020.02032

Berry Polyphenols and Fibers Modulate Distinct Microbial Metabolic Functions and Gut Microbiota Enterotype-Like Clustering in Obese Mice
Cited by: 75
Author(s): Maria Carolina Rodríguez-Daza, Marcela Roquim, Stéphanie Dudonné, Geneviève Pilon, Émile Lévy, André Marette, Denis Roy, Yves Desjardins
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0049263

Nocturnal Homing: Learning Walks in a Wandering Spider?
Cited by: 18
Author(s): Thomas Nørgaard, Yakir Luc Gagnon, Eric J. Warrant
Software Mentions: 5
Published: almost 14 years ago

10.3390/ijms22189930

Comparative Evaluation of Sucrosomial Iron and Iron Oxide Nanoparticles as Oral Supplements in Iron Deficiency Anemia in Piglets
Cited by: 7
Author(s): Rafał Mazgaj, Paweł Lipiński, Mateusz Szudzik, Aneta Jończy, Z Kopeć, Adrian Stankiewicz, M. Kamyczek, Dorine W. Swinkels, Beata Żelazowska, Rafał R. Starzyński
Software Mentions: 5
Published: almost 5 years ago

10.3389/fmicb.2020.00681

Rhodobacterales and Rhizobiales Are Associated With Stony Coral Tissue Loss Disease and Its Suspected Sources of Transmission
Cited by: 82
Author(s): Stephanie M. Rosales, Abigail S. Clark, Lindsay K. Huebner, Rob Ruzicka, Erinn M. Muller
Software Mentions: 5
Published: over 6 years ago

10.1002/ece3.6482

Marine water environmental DNA metabarcoding provides a comprehensive fish diversity assessment and reveals spatial patterns in a large oceanic area
Cited by: 46
Author(s): Natalia Fraija-Fernández, Marie-Catherine Bouquieaux, Anaïs Rey, Iñaki Mendibil, Unai Cotano, Xabier Irigoien, M.B. Santos, Naiara Rodríguez-Ezpeleta
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2018.00675

Gut Microbiota Profiling and Gut–Brain Crosstalk in Children Affected by Pediatric Acute-Onset Neuropsychiatric Syndrome and Pediatric Autoimmune Neuropsychiatric Disorders Associated With Streptococcal Infections
Cited by: 76
Author(s): Andrea Quagliariello, Federica Del Chierico, Alessandra Russo, Sofia Reddel, Giulia Conte, Loris Riccardo Lopetuso, Gianluca Ianiro, Bruno Dallapiccola, Francesco Cardona, Antonio Gasbarrini, Lorenza Putignani
Software Mentions: 5
Published: over 8 years ago

10.7717/peerj.5812

Home sick: impacts of migratory beekeeping on honey bee (Apis mellifera) pests, pathogens, and colony size
Cited by: 24
Author(s): Samantha A. Alger, P. Alexander Burnham, Zachary S. Lamas, Alison K. Brody, Leif L. Richardson
Software Mentions: 5
Published: almost 8 years ago

10.3389/fmicb.2021.738129

Taxonomic Compositions and Co-occurrence Relationships of Protists in Bulk Soil and Rhizosphere of Soybean Fields in Different Regions of China
Cited by: 3
Author(s): Jun Zhang, Pengcheng Xing, Mengyu Niu, Gehong Wei, Peng Shi
Software Mentions: 5
Published: almost 5 years ago

10.3389/fmicb.2021.616828

Soil Texture, Sampling Depth and Root Hairs Shape the Structure of ACC Deaminase Bacterial Community Composition in Maize Rhizosphere
Cited by: 19
Author(s): Lucie Gebauer, Marie-Lara Bouffaud, Minh Ganther, Bunlong Yim, Doris Vetterlein, Kornelia Smalla, François Buscot, Anna Heintz‐Buschart, Mika Tarkka
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.6162

Diversity analysis of the rhizospheric and endophytic bacterial communities of Senecio vulgaris L. (Asteraceae) in an invasive range
Cited by: 20
Author(s): Dandan Cheng, Zhongsai Tian, Liang Feng, Lin Xu, Hongmei Wang
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0248967

The pulmonary mycobiome—A study of subjects with and without chronic obstructive pulmonary disease
Cited by: 13
Author(s): Einar Marius Hjellestad Martinsen, Tomas Mikal Eagan, Elise Orvedal Leiten, Ingvild Haaland, Gunnar Reksten Husebø, Kristel Svalland Knudsen, Christine Drengenes, Walter Sanseverino, Andreu Paytuví-Gallart, Rune Nielsen
Software Mentions: 5
Published: over 5 years ago

10.3390/ijms22115876

Oral Microbiome in Relation to Periodontitis Severity and Systemic Inflammation
Cited by: 31
Author(s): Adelina S. Plachokova, Sergio Andreu‐Sánchez, Marlies P. Noz, Jingyuan Fu, Niels P. Riksen
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2017.01574

Culture Media and Individual Hosts Affect the Recovery of Culturable Bacterial Diversity from Amphibian Skin
Cited by: 25
Author(s): Daniel Medina, Jenifer B. Walke, Zachary Gajewski, Matthew H. Becker, Meredith C. Swartwout, Lisa K. Belden
Software Mentions: 5
Published: almost 9 years ago

10.3390/microorganisms8030404

Understanding the Response of Nitrifying Communities to Disturbance in the McMurdo Dry Valleys, Antarctica
Cited by: 13
Author(s): Maria Monteiro, Mafalda S. Baptista, Joana Séneca, Luı́s Torgo, Charles K. Lee, S. Craig Cary, Catarina Magalhães
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0184515

Unraveling the human salivary microbiome diversity in Indian populations
Cited by: 19
Author(s): Anujit Sarkar, Mark Stoneking, Madhusudan R. Nandineni
Software Mentions: 5
Published: almost 9 years ago

10.3389/fmicb.2019.01768

Shear Stress as a Major Driver of Marine Biofilm Communities in the NW Mediterranean Sea
Cited by: 30
Author(s): Elisa Caldeira Pires Catão, Thomas V. Pollet, Benjamin Misson, Cédric Garnier, Jean-François Ghiglione, Raphaëlle Barry‐Martinet, Marine Maintenay, Christine Bressy, Jean‐François Briand
Software Mentions: 5
Published: about 7 years ago

10.3389/fmicb.2018.03243

Dead or Alive; or Does It Really Matter? Level of Congruency Between Trophic Modes in Total and Active Fungal Communities in High Arctic Soil
Cited by: 22
Author(s): Magdalena Wutkowska, Anna Vader, Sunil Mundra, Elisabeth J. Cooper, Pernille Bronken Eidesen
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0214833

Disparate effects of antibiotic-induced microbiome change and enhanced fitness in Daphnia magna
Cited by: 27
Author(s): Asa Motiei, Björn Brindefalk, Martin Ogonowski, Rehab El-Shehawy, Paulina Pastuszek, Karin Ek, Birgitta Liewenborg, Klas I. Udekwu, Elena Gorokhova
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2019.02587

Complementary DNA/RNA-Based Profiling: Characterization of Corrosive Microbial Communities and Their Functional Profiles in an Oil Production Facility
Cited by: 15
Author(s): Silvia J. Salgar-Chaparro, Laura L. Machuca
Software Mentions: 5
Published: almost 7 years ago

10.7717/peerj.3246

Microbial communities in sediment from Zostera marina patches, but not the Z. marina leaf or root microbiomes, vary in relation to distance from patch edge
Cited by: 77
Author(s): Cassandra L. Ettinger, Sofie E. Voerman, Jenna M. Lang, John J. Stachowicz, Jonathan A. Eisen
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0212185

Physical environmental conditions determine ubiquitous spatial differentiation of standing plants and seedbanks in Neotropical riparian dry forests
Cited by: 2
Author(s): Alejandra De León Ibarra, Néstor A. Mariano, Valentino Sorani, Gabriel Flores‐Franco, Evodio Rendón Alquicira, Elisabet V. Wehncke
Software Mentions: 5
Published: over 7 years ago

10.3389/fmicb.2019.01665

Spatial Environmental Heterogeneity Determines Young Biofilm Assemblages on Microplastics in Baltic Sea Mesocosms
Cited by: 97
Author(s): Katharina Kesy, Sonja Oberbeckmann, Bernd Kreikemeyer, Matthias Labrenz
Software Mentions: 5
Published: about 7 years ago

10.3389/fmicb.2019.01486

Soil Salinity and pH Drive Soil Bacterial Community Composition and Diversity Along a Lateritic Slope in the Avon River Critical Zone Observatory, Western Australia
Cited by: 39
Author(s): Flora Jane Mary O'Brien, Maya Almaraz, Melissa A. Foster, A. F. Hill, David P. Huber, Elizabeth King, Harry Langford, Mary-Anne Lowe, Bede S. Mickan, Valerie S. Miller, Oliver Moore, Falko Mathes, Deirdre Gleeson, Matthias Leopold
Software Mentions: 5
Published: about 7 years ago

10.3389/fmicb.2021.703693

Identification of an Intestinal Microbiota Signature Associated With the Severity of Necrotic Enteritis
Cited by: 14
Author(s): Qing Yang, Jing Liu, Xiaofan Wang, Kelsy Robinson, Melanie A. Whitmore, Sydney Stewart, Jiangchao Zhao, Guolong Zhang
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2021.631244

Unravelling the Importance of Diazotrophy in Corals – Combined Assessment of Nitrogen Assimilation, Diazotrophic Community and Natural Stable Isotope Signatures
Cited by: 6
Author(s): Vanessa N. Bednarz, Jeroen A. J. M. van de Water, Renaud Grover, Jean‐François Maguer, Maoz Fine, Christine Ferrier‐Pagès
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2020.548618

Microbiome in Healthy Women Between Two Districts With Different Air Quality Index
Cited by: 8
Author(s): Yinhua Wu, Zujin Wang, Yu Zhang, Li-Ming Ruan, Ang Li, Xiaoyan Liu
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pone.0170763

Diversity of Guilds of Amphibian Larvae in North-Western Africa
Cited by: 8
Author(s): Daniel Escoriza, Jihène Ben Hassine
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0118896

Wood-Inhabiting Beetles in Low Stumps, High Stumps and Logs on Boreal Clear-Cuts: Implications for Dead Wood Management
Cited by: 21
Author(s): Jon Andersson, Joakim Hjältén, Mats Dynesius
Software Mentions: 5
Published: over 11 years ago

10.3389/fmicb.2019.02628

Strong Seasonality in Arctic Estuarine Microbial Food Webs
Cited by: 22
Author(s): Colleen T. E. Kellogg, J. W. McClelland, Kenneth H. Dunton, Byron C. Crump
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2018.02121

Antibiotic Effects on Microbial Communities Responsible for Denitrification and N2O Production in Grassland Soils
Cited by: 48
Author(s): Miguel Semedo, Bongkeun Song, Tavis Sparrer, R. Phillips
Software Mentions: 5
Published: almost 8 years ago

10.7717/peerj.10463

Diversity of microbes colonizing forages of varying lignocellulose properties in the sheep rumen
Cited by: 13
Author(s): Mohammad Farhad Vahidi, Javad Gharechahi, Mehrdad Behmanesh, Xuezhi Ding, Jianlin Han, Ghasem Hosseini Salekdeh
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2020.603234

Database Mining to Unravel the Ecology of the Phylum Chloroflexi in Methanogenic Full Scale Bioreactors
Cited by: 13
Author(s): Patricia Bovio-Winkler, Angela Cabezas, Claudia Etchebehere
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2019.02798

The Compositionally Distinct Cyanobacterial Biocrusts From Brazilian Savanna and Their Environmental Drivers of Community Diversity
Cited by: 22
Author(s): Nathali Machado de Lima, Vanessa Moreira Câmara Fernandes, Daniel Roush, Sergio Velasco Ayuso, Janaína Rigonato, Ferrán García-Pichel, Luis Henrique Zanini Branco
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.8549

Invasive vegetation affects amphibian skin microbiota and body condition
Cited by: 7
Author(s): Obed Hernández‐Gómez, Allison Q. Byrne, Alex R. Gunderson, Thomas S. Jenkinson, Clay F. Noss, Andrew P. Rothstein, Molly C. Womack, Erica Bree Rosenblum
Software Mentions: 5
Published: over 6 years ago

10.3389/fmicb.2015.00024

Resuscitation of the rare biosphere contributes to pulses of ecosystem activity
Cited by: 150
Author(s): Zachary T. Aanderud, Stuart Jones, Noah Fierer, Jay T. Lennon
Software Mentions: 5
Published: over 11 years ago

10.1038/s41598-021-91425-7

Establishment and assessment of an amplicon sequencing method targeting the 16S-ITS-23S rRNA operon for analysis of the equine gut microbiome
Cited by: 17
Author(s): Yuta Kinoshita, Hidekazu Niwa, Eri Uchida‐Fujii, Toshio Nukada
Software Mentions: 5
Published: about 5 years ago

10.3389/fmicb.2019.02244

Microbial Community Shifts Associated With the Ongoing Stony Coral Tissue Loss Disease Outbreak on the Florida Reef Tract
Cited by: 115
Author(s): Julie Meyer, Jessy Castellanos-Gell, Greta S. Aeby, Claudia C. Häse, Blake Ushijima, Valerie J. Paul
Software Mentions: 5
Published: almost 7 years ago

10.3389/fmicb.2016.01637

Response of Core Microbial Consortia to Chronic Hydrocarbon Contaminations in Coastal Sediment Habitats
Cited by: 60
Author(s): Mathilde Jeanbille, Jérôme Gury, Robert Duran, Jacek Tronczyński, Hélène Agogué, Olfa Ben Saïd, Jean-François Ghiglione, Jean‐Christophe Auguet
Software Mentions: 5
Published: almost 10 years ago

10.1371/journal.pone.0208917

The hindgut microbiota of praying mantids is highly variable and includes both prey-associated and host-specific microbes
Cited by: 6
Author(s): Kara Tinker, Elizabeth A. Ottesen
Software Mentions: 5
Published: over 7 years ago

10.3389/fmicb.2020.01541

Hurricane Disturbance Stimulated Nitrification and Altered Ammonia Oxidizer Community Structure in Lake Okeechobee and St. Lucie Estuary (Florida)
Cited by: 15
Author(s): Justyna J. Hampel, Mark J. McCarthy, Sanni L. Aalto, Silvia E. Newell
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2019.02143

The Bacterial Microbiome Associated With Arid Biocrusts and the Biogeochemical Influence of Biocrusts Upon the Underlying Soil
Cited by: 37
Author(s): Benjamin Moreira‐Grez, Kang Tam, Adam T. Cross, Jean Wan Hong Yong, Deepak Kumaresan, Paul Nevill, Mark Farrell, Andrew S. Whiteley
Software Mentions: 5
Published: almost 7 years ago

10.1002/ece3.3148

Patterns of seasonality and group membership characterize the gut microbiota in a longitudinal study of wild Verreaux's sifakas (Propithecus verreauxi)
Cited by: 80
Author(s): Andrea Springer, Claudia Fichtel, Gabriel A. Al‐Ghalith, Flávia Koch, Katherine R. Amato, Jonathan B. Clayton, Dan Knights, Peter M. Kappeler
Software Mentions: 5
Published: about 9 years ago

10.1371/journal.pone.0147798

Carcass Type Affects Local Scavenger Guilds More than Habitat Connectivity
Cited by: 61
Author(s): Zachary H. Olson, James C. Beasley, Olin E. Rhodes
Software Mentions: 5
Published: over 10 years ago

10.3390/microorganisms9040754

Active Rumen Bacterial and Protozoal Communities Revealed by RNA-Based Amplicon Sequencing on Dairy Cows Fed Different Diets at Three Physiological Stages
Cited by: 8
Author(s): Lucia Bailoni, Lisa Carraro, Marco Cardin, Barbara Cardazzo
Software Mentions: 5
Published: over 5 years ago

10.3390/nu11020313

Sex-Specific Changes in Gut Microbiome Composition following Blueberry Consumption in C57BL/6J Mice
Cited by: 28
Author(s): Umesh D. Wankhade, Ying Zhang, Oxana P. Lazarenko, Sree V. Chintapalli, Brian D. Piccolo, Jin‐Ran Chen, Kartik Shankar
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-021-84497-y

Gut microbiota resilience in horse athletes following holidays out to pasture
Cited by: 15
Author(s): Núria Mach, Léa Lansade, David Bars-Cortina, Sophie Dhorne–Pollet, Aline Foury, Marie‐Pierre Moisan, Alice Ruet
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-83524-2

Comparative analysis of the alveolar microbiome in COPD, ECOPD, Sarcoidosis, and ILD patients to identify respiratory illnesses specific microbial signatures
Cited by: 37
Author(s): Shashank Gupta, Malini Shariff, Gaura Chaturvedi, Arpit Sharma, Nitin Goel, Monika Yadav, Martin Steen Mortensen, Søren J. Sørensen, Mitali Mukerji, Nar Singh Chauhan
Software Mentions: 5
Published: over 5 years ago

10.3390/microorganisms9040845

Impact of Chronic Exposure to Sublethal Doses of Glyphosate on Honey Bee Immunity, Gut Microbiota and Infection by Pathogens
Cited by: 29
Author(s): Loreley Castelli, Sofía Balbuena, Belén Branchiccela, Pablo Zunino, Joanito Liberti, Philipp Engel, Karina Antúnez
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-82988-6

Insect reproductive behaviors are important mediators of carrion nutrient release into soil
Cited by: 2
Author(s): Brooke K. Woelber-Kastner, Serita D. Frey, Daniel R. Howard, Carrie L. Hall
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0120605

The Unique Chemistry of Eastern Mediterranean Water Masses Selects for Distinct Microbial Communities by Depth
Cited by: 57
Author(s): Stephen M. Techtmann, Julian L. Fortney, Kati Ayers, Dominique C. Joyner, Thomas D. Linley, Susan M. Pfiffner, Terry C. Hazen
Software Mentions: 5
Published: over 11 years ago

10.1002/lno.10967

Fewer blue lakes and more murky lakes across the continental U.S.: Implications for planktonic food webs
Cited by: 64
Author(s): Dina M. Leech, Amina I. Pollard, Stephanie Labou, Stephanie E. Hampton
Software Mentions: 5
Published: almost 8 years ago

10.1186/s12859-021-04106-7

EzMAP: Easy Microbiome Analysis Platform
Cited by: 0
Author(s): Gnanendra Shanmugam, Song Hee Lee, Junhyun Jeon
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0053514

Testing the Stress-Gradient Hypothesis at the Roof of the World: Effects of the Cushion Plant Thylacospermum caespitosum on Species Assemblages
Cited by: 58
Author(s): Miroslav Dvorský, Jiří Doležal, Martin Kopecký, Zuzana Chlumská, Kateřina Janatková, Jan Altman, Francesco de Bello, Klára Řeháková
Software Mentions: 5
Published: over 13 years ago

10.1371/journal.ppat.1009487

Lipocalin 2 modulates dendritic cell activity and shapes immunity to influenza in a microbiome dependent manner
Cited by: 6
Author(s): Martin L. Watzenboeck, Barbara Drobits, Sophie Zahalka, Anna-Dorothea Gorki, Asma Farhat, Federica Quattrone, Anastasiya Hladik, Karin Lakovits, Gabriel Richard, Therese Lederer, Birgit Strobl, Gijs A. Versteeg, Louis Boon, Philipp Starkl, Sylvia Knapp
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.9003

Changes in the gut microbiota during Asian particolored bat (Vespertilio sinensis) development
Cited by: 8
Author(s): Zongsheng Yin, Keping Sun, Aoqiang Li, Deyi Sun, Zhongle Li, Guohong Xiao, Feng Jiang
Software Mentions: 5
Published: over 6 years ago

10.3389/fonc.2021.650026

Fecal Microbiota and Gut Microbe-Derived Extracellular Vesicles in Colorectal Cancer
Cited by: 33
Author(s): Jihye Park, Nam-Eun Kim, Hyuk Yoon, Cheol Min Shin, Nayoung Kim, Dong Hoon Lee, Jae Yong Park, Chang Hwan Choi, Jae Gyu Kim, Eui Chong Kim, Tae-Seop Shin, Jinho Yang, Young Soo Park
Software Mentions: 5
Published: almost 5 years ago

10.1098/rsos.180041

Synchronized shift of oral, faecal and urinary microbiotas in bats and natural infection dynamics during seasonal reproduction
Cited by: 25
Author(s): Muriel Dietrich, Teresa Kearney, Ernest C.J. Seamark, Janusz T. Pawęska, Wanda Markotter
Software Mentions: 5
Published: over 8 years ago

10.3389/fmicb.2019.02372

Phylogeography and Ecological Niche Shape the Cichlid Fish Gut Microbiota in Central American and African Lakes
Cited by: 25
Author(s): Laura Baldo, Joan Lluís Riera, Walter Salzburger, Marta Barluenga
Software Mentions: 5
Published: almost 7 years ago

10.3390/microorganisms9050981

The Responses to Long-Term Water Addition of Soil Bacterial, Archaeal, and Fungal Communities in a Desert Ecosystem
Cited by: 5
Author(s): Ying Gao, Xiaotian Xu, Jingtao Ding, Fang Bao, Yashika G. De Costa, Wei-Qin Zhuang, Bo Wu
Software Mentions: 5
Published: over 5 years ago

10.1128/AEM.01229-20

Relationship between Rainfall, Fecal Pollution, Antimicrobial Resistance, and Microbial Diversity in an Urbanized Subtropical Bay
Cited by: 17
Author(s): Nicole C. Powers, Hailey R. Wallgren, Sandra Marbach, John Turner
Software Mentions: 5
Published: almost 6 years ago

10.3390/microorganisms9071470

Changes in Soil Microbial Communities across an Urbanization Gradient: A Local-Scale Temporal Study in the Arid Southwestern USA
Cited by: 7
Author(s): Yongjian Chen, Adalee Martinez, Sydney Cleavenger, Julia Rudolph, Albert Barberán
Software Mentions: 5
Published: about 5 years ago

10.3390/microorganisms8010134

Doing More with Less: A Comparison of 16S Hypervariable Regions in Search of Defining the Shrimp Microbiota
Cited by: 34
Author(s): Rodrigo García-López, Fernanda Cornejo‐Granados, Alonso A. López-Zavala, Filiberto Sánchez-López, Andrés Cota-Huízar, Rogerio R. Sotelo‐Mundo, Abraham Guerrero, Alfredo Mendoza-Vargas, Bruno Gómez‐Gil, Adrián Ochoa-Leyva
Software Mentions: 5
Published: over 6 years ago

10.3390/microorganisms9081711

Microbial Shift in the Enteric Bacteriome of Coral Reef Fish Following Climate-Driven Regime Shifts
Cited by: 6
Author(s): Marie-Charlotte Cheutin, Sébastien Villéger, Christina C. Hicks, James P. W. Robinson, Nicholas A. J. Graham, Clémence Marconnet, Claudia Ximena Ortiz Restrepo, Yvan Bettarel, Thierry Bouvier, Jean‐Christophe Auguet
Software Mentions: 5
Published: about 5 years ago

10.3389/fpls.2019.01018

Plant Diversity and Fertilizer Management Shape the Belowground Microbiome of Native Grass Bioenergy Feedstocks
Cited by: 17
Author(s): Daniel Revillini, Gail W. T. Wilson, R. M. Miller, Ryan C. Lancione, Nancy Collins Johnson
Software Mentions: 5
Published: about 7 years ago

10.3389/fpls.2019.00643

Shifts in Ectomycorrhizal Fungal Communities and Exploration Types Relate to the Environment and Fine-Root Traits Across Interior Douglas-Fir Forests of Western Canada
Cited by: 43
Author(s): Camille E. Defrenne, Timothy J. Philpott, Shannon H. A. Guichon, W. Jean Roach, Brian J. Pickles, Suzanne W. Simard
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0214372

Patterns of funerary variability, diet, and developmental stress in a Celtic population from NE Italy (3rd-1st c BC)
Cited by: 12
Author(s): Zita Laffranchi, Giuliana Cavalieri Manasse, Luciano Salzani, Marco Milella
Software Mentions: 5
Published: over 7 years ago

10.3389/fpls.2019.00214

Root-Associated Fungal Communities From Two Phenologically Contrasting Silver Fir (Abies alba Mill.) Groups of Trees
Cited by: 18
Author(s): Tina Unuk, Tijana Martinović, Domen Finžgar, Nataša Šibanc, Tine Grebenc, Hojka Kraigher
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0245857

Functional capacities of microbial communities to carry out large scale geochemical processes are maintained during ex situ anaerobic incubation
Cited by: 9
Author(s): Rachel M. Wilson, Ahmed A. Zayed, Kelsey B. Crossen, Ben J. Woodcroft, Malak M. Tfaily, Joanne B. Emerson, Nicole Raab, S. B. Hodgkins, B. A. Verbeke, Gene W. Tyson, Patrick Crill, S. R. Saleska, Jeffrey P. Chanton, V. I. Rich
Software Mentions: 5
Published: over 5 years ago

10.1111/1751-7915.13485

Faecal microbiota and functional capacity associated with weaning weight in meat rabbits
Cited by: 19
Author(s): Shouguo Fang, Xuan Chen, Liwen Zhou, Chongchong Wang, Qiaohui Chen, Ruiyi Lin, Tianfang Xiao, Qianfu Gan
Software Mentions: 5
Published: almost 7 years ago

10.1128/AEM.00149-21

Hyperlocal Variation in Soil Iron and the Rhizosphere Bacterial Community Determines Dollar Spot Development in Amenity Turfgrass
Cited by: 1
Author(s): Ming-Yi Chou, Smita Shrestha, Renée A. Rioux, Paul L. Koch
Software Mentions: 5
Published: over 5 years ago

10.3390/microorganisms9020262

Bacterial Diversity and Community Composition Distribution in Cold-Desert Habitats of Qinghai–Tibet Plateau, China
Cited by: 7
Author(s): Wei Zhang, Ali Bahadur, Wasim Sajjad, Gaosen Zhang, Fahad Nasir, Binglin Zhang, Xiukun Wu, Guangxiu Lu, Tuo Chen
Software Mentions: 5
Published: over 5 years ago

10.3389/fpls.2018.01001

Environmental Characteristics and Anthropogenic Impact Jointly Modify Aquatic Macrophyte Species Diversity
Cited by: 24
Author(s): Merja Elo, Janne Alahuhta, Antti Kanninen, Kristian Meissner, Katri Seppälä, Mikko Mönkkönen
Software Mentions: 5
Published: about 8 years ago

10.1128/AEM.02969-19

Different Effects of Soil Fertilization on Bacterial Community Composition in the Penicillium canescens Hyphosphere and in Bulk Soil
Cited by: 12
Author(s): Yuan Zhang, Xiuli Hao, Adriana M. García-Lemos, Inês Nunes, Mette Haubjerg Nicolaisen, Ole Nybroe
Software Mentions: 5
Published: over 6 years ago

10.1098/rsos.170082

Density-dependent coral recruitment displays divergent responses during distinct early life-history stages
Cited by: 54
Author(s): Christopher Doropoulos, Nicolas R. Evensen, Luis A. Gómez-Lemos, Russell C. Babcock
Software Mentions: 5
Published: over 9 years ago

10.7717/peerj.447

Mobile phones carry the personal microbiome of their owners
Cited by: 127
Author(s): James F. Meadow, Adam E. Altrichter, Jessica L. Green
Software Mentions: 5
Published: about 12 years ago

Projects: cran: PERMANOVA

Science Score: 85/100

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Papers Mentioning PERMANOVA 6,292