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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s13059-021-02463-3

https://doi.org/10.1186/s13059-021-02463-3

Deterministic transition of enterotypes shapes the infant gut microbiome at an early age

Cited by: 50
Author(s): Liwen Xiao, Jinfeng Wang, Jiayong Zheng, Xiaoqing Li, Fangqing Zhao
Published: almost 4 years ago

Software Mentions 5

cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
Very Likely Science (85)
cran: picante
Integrating Phylogenies and Ecology
Papers that mentioned: 414
Very Likely Science (85)
cran: randomForest
Breiman and Cutler's Random Forests for Classification and Regression
Papers that mentioned: 1,447
Very Likely Science (100)
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306
Very Likely Science (100)