Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s40168-017-0292-4

https://doi.org/10.1186/s40168-017-0292-4

Whole metagenome profiles of particulates collected from the International Space Station

Cited by: 50
Author(s): Nicholas A. Be, Aram Avila-Herrera, Jonathan Allen, Nitin Kumar Singh, Aleksandra Checinska Sielaff, Crystal Jaing, Kasthuri Venkateswaran
Published: over 7 years ago

Software Mentions 5

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: panphlan
PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition and *in-vivo* transcriptional activity of individual strains in metagenomic samples. PanPhlAn’s ability for strain-tracking and functional analysis of unknown pathogens makes it an efficient tool for culture-free infectious outbreak epidemiology and microbial population studies.
Papers that mentioned: 1