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Projects: pypi: panphlan

https://packages.ecosyste.ms/registries/pypi.org/packages/panphlan

PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition and *in-vivo* transcriptional activity of individual strains in metagenomic samples. PanPhlAn’s ability for strain-tracking and functional analysis of unknown pathogens makes it an efficient tool for culture-free infectious outbreak epidemiology and microbial population studies.
2 versions
Latest release: about 6 years ago
12 downloads last month

Enhanced Analysis
Repository Activity:
Repository Owner: Segata Lab (organization)
The computational metagenomics lab at the Dep. CIBIO, University of Trento Academic
README Analysis:
Science Score: 85/100
Starting Score: 100 points
Bonuses:
  • +20 Academic repository owner
    Repository owned by academic institution
  • +15 Institutional repository owner
    Repository owned by research institution
  • +8 Science terms in README
    4 scientific terms found in README
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem
  • -15 No science keywords
    No scientific terms found in keywords/classifiers
  • -25 Non-science indicators
    1 non-scientific terms found
Very Likely Science (85)

Papers Mentioning panphlan 1

10.1186/s40168-017-0292-4
Whole metagenome profiles of particulates collected from the International Space Station
Cited by: 50
Author(s): Nicholas A. Be, Aram Avila-Herrera, Jonathan Allen, Nitin Kumar Singh, Aleksandra Checinska Sielaff, Crystal Jaing, Kasthuri Venkateswaran
Software Mentions: 5
Published: almost 9 years ago