cran: Hmisc | Projects | Ecosyste.ms: Papers

10.3389/fmolb.2020.620765

Development and External Validation of a Novel Immune Checkpoint–Related Gene Signature for Prediction of Overall Survival in Hepatocellular Carcinoma
Cited by: 11
Author(s): Enfa Zhao, Shimin Chen, Yujie Dang
Software Mentions: 6
Published: about 4 years ago

10.3390/insects11040217

Host Plants Influence the Symbiont Diversity of Eriosomatinae (Hemiptera: Aphididae)
Cited by: 14
Author(s): Tingting Xu, Li‐Yun Jiang, Jing Chen, Ge‐Xia Qiao
Software Mentions: 6
Published: almost 5 years ago

10.3389/fchem.2021.659656

iMAP: A Web Server for Metabolomics Data Integrative Analysis
Cited by: 4
Author(s): Di Zhou, Wen-Hong Zhu, Tao Sun, Yang Wang, Yi Chi, Tianlu Chen, Jingchao Lin
Software Mentions: 6
Published: almost 4 years ago

10.7717/peerj.11132

Bloom evenness modulates the influence of bloom abundance on insect community structure in suburban gardens
Cited by: 4
Author(s): Elizabeth Braatz, Zachariah J. Gezon, Kristin Rossetti, Lily Maynard, Jonathan S. Bremer, Geena M. Hill, Marissa A. Streifel, Jaret C. Daniels
Software Mentions: 6
Published: almost 4 years ago

10.3389/fonc.2019.00692

Transcriptomic Analysis Identifies RNA Binding Proteins as Putative Regulators of Myelopoiesis and Leukemia
Cited by: 16
Author(s): Subha Saha, Krushna Chandra Murmu, Mayukh Biswas, Sohini Chakraborty, Jhinuk Basu, Swati Madhulika, Srinivasa Prasad Kolapalli, Santosh Chauhan, Amitava Sengupta, Punit Prasad
Software Mentions: 6
Published: over 5 years ago

10.1245/s10434-018-6435-4

Preoperative Nomogram to Risk Stratify Patients for the Benefit of Trimodality Therapy in Esophageal Adenocarcinoma
Cited by: 22
Author(s): Lucas Goense, Peter S.N. van Rossum, Mian Xi, Dipen M. Maru, Brett W. Carter, Gert J. Meijer, Linus Ho, Richard van Hillegersberg, Wayne L. Hofstetter, Steven H. Lin
Software Mentions: 5
Published: almost 7 years ago

10.3389/fmicb.2017.00101

Freshwater Recirculating Aquaculture System Operations Drive Biofilter Bacterial Community Shifts around a Stable Nitrifying Consortium of Ammonia-Oxidizing Archaea and Comammox Nitrospira
Cited by: 163
Author(s): Ryan P. Bartelme, Sandra L. McLellan, Ryan J. Newton
Software Mentions: 5
Published: about 8 years ago

10.7717/peerj.7208

No evidence for negative impacts of acute sulfoxaflor exposure on bee olfactory conditioning or working memory
Cited by: 38
Author(s): Harry Siviter, A. Don Scott, Grégoire Pasquier, Christopher D. Pull, Mark J. F. Brown, Ellouise Leadbeater
Software Mentions: 5
Published: over 5 years ago

10.1093/jxb/eraa289

Measuring Rubisco activity: challenges and opportunities of NADH-linked microtiter plate-based and 14C-based assays
Cited by: 11
Author(s): Cristina Rodrigues Gabriel Sales, Anabela Bernardes da Silva, Elizabete Carmo‐Silva
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.ppat.1007747

A set of Arabidopsis genes involved in the accommodation of the downy mildew pathogen Hyaloperonospora arabidopsidis
Cited by: 13
Author(s): Martina Katharina Ried, Aline Banhara, Fang-Yu Hwu, Andreas Binder, Andrea A. Gust, Caroline Höfle, Ralph Hückelhoven, Thorsten Nürnberger, Martin Parniske
Software Mentions: 5
Published: over 5 years ago

10.1097/EE9.0000000000000093

Comparing the performance of air pollution models for nitrogen dioxide and ozone in the context of a multilevel epidemiological analysis
Cited by: 14
Author(s): B. K. Butland, Evangelia Samoli, Richard Atkinson, Benjamin Barratt, Sean Beevers, Nutthida Kitwiroon, Konstantina Dimakopoulou, Sophia Rodopoulou, Joel Schwartz, Klea Katsouyanni
Software Mentions: 5
Published: over 4 years ago

10.1097/EE9.0000000000000094

The impact of measurement error in modeled ambient particles exposures on health effect estimates in multilevel analysis
Cited by: 15
Author(s): Evangelia Samoli, B. K. Butland, Sophia Rodopoulou, Richard Atkinson, Benjamin Barratt, Sean Beevers, Andrew Beddows, Konstantina Dimakopoulou, Joel Schwartz, Mahdieh Danesh Yazdi, Klea Katsouyanni
Software Mentions: 5
Published: over 4 years ago

10.3389/fmicb.2018.00675

Gut Microbiota Profiling and Gut–Brain Crosstalk in Children Affected by Pediatric Acute-Onset Neuropsychiatric Syndrome and Pediatric Autoimmune Neuropsychiatric Disorders Associated With Streptococcal Infections
Cited by: 76
Author(s): Andrea Quagliariello, Federica Del Chierico, Alessandra Russo, Sofia Reddel, Giulia Conte, Loris Riccardo Lopetuso, Gianluca Ianiro, Bruno Dallapiccola, Francesco Cardona, Antonio Gasbarrini, Lorenza Putignani
Software Mentions: 5
Published: almost 7 years ago

10.3389/fmicb.2021.569020

Distribution of Hydrogen-Producing Bacteria in Tibetan Hot Springs, China
Cited by: 3
Author(s): Li Ma, Geng Wu, Jian Yang, Liuqin Huang, Dorji Phurbu, Wenjun Li, Hongchen Jiang
Software Mentions: 5
Published: over 3 years ago

10.1186/s13071-020-04221-z

Measuring mosquito control: adult-mosquito catches vs egg-trap data as endpoints of a cluster-randomized controlled trial of mosquito-disseminated pyriproxyfen
Cited by: 9
Author(s): Klauss Kleydmann Sabino Garcia, Hanid S. Versiani, Taís O. Araújo, João Paulo Araújo da Conceição, Marcos Takashi Obara, Walter Massa Ramalho, Thaís Tâmara Castro Minuzzi-Souza, Gustavo D. Gomes, Elisa Neves Vianna, Renata Velôzo Timbó, Vinicios G. C. Barbosa, Maridalva S. P. Rezende, Luciana P. F. Martins, Glauco O. Macedo, Bruno Lopes Carvalho, Israel Martins Moreira, Lorrainy A. Bartasson, Nadjar Nitz, Sérgio Luíz Bessa Luz, Rodrigo Gurgel-Gonçalves, Fernando Abad‐Franch
Software Mentions: 5
Published: over 4 years ago

10.1186/s12957-020-1805-3

A competing-risk nomogram to predict cause-specific death in elderly patients with colorectal cancer after surgery (especially for colon cancer)
Cited by: 7
Author(s): Zhengbing Wang, Yawei Wang, Yan Yang, Yi Luo, Jiangtao Liu, Yingjie Xu, Xuan Li
Software Mentions: 5
Published: about 5 years ago

10.1186/s12889-018-5901-z

An exploratory analysis of missing data from the Royal Bank of Canada (RBC) Learn to Play – Canadian Assessment of Physical Literacy (CAPL) project
Cited by: 7
Author(s): Christine Delisle Nyström, Joel D. Barnes, Mark S. Tremblay
Software Mentions: 5
Published: over 6 years ago

10.3390/nu13041217

Quality and Quantity of Protein Intake Influence Incidence of Type 2 Diabetes Mellitus in Coronary Heart Disease Patients: From the CORDIOPREV Study
Cited by: 7
Author(s): Silvia de la Cruz‐Ares, Francisco M. Gutiérrez-Mariscal, Juan F. Alcalá‐Díaz, Gracia M. Quintana-Navarro, Alicia Podadera-Herreros, Magdalena P. Cardelo, José D. Torres-Peña, Antonio P. Arenas de Larriva, Pablo Pérez-Martı́nez, Javier Delgado-Lista, Elena M. Yubero‐Serrano, José López‐Miranda
Software Mentions: 5
Published: almost 4 years ago

10.1007/s11031-018-9684-4

Individual differences in emotion regulation moderate the associations between empathy and affective distress
Cited by: 42
Author(s): Philip A. Powell
Software Mentions: 5
Published: almost 7 years ago

10.3389/fmicb.2020.01212

Diverse Microbial Composition of Sourdoughs From Different Origins
Cited by: 50
Author(s): Andrea Comasio, Marko Verce, Simon Van Kerrebroeck, Luc De Vuyst
Software Mentions: 5
Published: over 4 years ago

10.18632/oncotarget.15349

Interleukin-1β levels predict long-term mortality and need for heart transplantation in ambulatory patients affected by idiopathic dilated cardiomyopathy
Cited by: 19
Author(s): Aneta Aleksova, Antonio Paolo Beltrami, Cosimo Carriere, Giulia Barbati, Pierluigi Lesizza, Martina Perrieri-Montanino, Miriam Isola, Piero Gentile, Elisabetta Salvioni, Tarcisio Not, Piergiuseppe Agostoni, Gianfranco Sinagra
Software Mentions: 5
Published: almost 8 years ago

10.2196/13408

Translation of the eHealth Impact Questionnaire for a Population of Dutch Electronic Health Users: Validation Study
Cited by: 12
Author(s): Koen Ilja Neijenhuijs, Anja van der Hout, Evalien Veldhuijzen, Gwendolyne G M Scholten-Peeters, Cornelia F. van Uden–Kraan, Pim Cuijpers, Irma M. Verdonck‐de Leeuw
Software Mentions: 5
Published: over 5 years ago

10.1002/jcp.28522

Comprehensive analysis of a ceRNA network reveals potential prognostic cytoplasmic lncRNAs involved in HCC progression
Cited by: 84
Author(s): Yi Bai, Junyu Long, Zhisong Liu, Jianzhen Lin, Hanchan Huang, Dongxu Wang, Yang Xu, Fei Miao, Yilei Mao, Xinting Sang, Hong Zhao
Software Mentions: 5
Published: almost 6 years ago

10.3390/jcm9041205

The Integration of qSOFA with Clinical Variables and Serum Biomarkers Improves the Prognostic Value of qSOFA Alone in Patients with Suspected or Confirmed Sepsis at ED Admission
Cited by: 14
Author(s): Filippo Mearelli, Giulia Barbati, Chiara Casarsa, Carlo Giansante, Andrea Breglia, Andrea Spica, Cristina Moras, Gaia Olivieri, Alessandro Agostino Occhipinti, Margherita De Nardo, Francesca Spagnol, Nicola Fiotti, Filippo Giorgio Di Girolamo, Maurizio Ruscio, Luigi Mario Castello, Efrem Colonetti, Rossella Marino, Claudio Ronco, Michela Zanetti, Enrico Lupia, María Lorenza Muiesan, Salvatore Di Somma, Gian Carlo Avanzi, Gianni Biolo
Software Mentions: 5
Published: almost 5 years ago

10.3390/microorganisms8071032

Structures of the Skin Microbiome and Mycobiome Depending on Skin Sensitivity
Cited by: 10
Author(s): Hye Lim Keum, Hanbyul Kim, Hye-Jin Kim, Taehun Park, Seoyung Kim, Shi An, Woo Jun Sul
Software Mentions: 5
Published: over 4 years ago

10.3389/fmicb.2018.01128

Sediment Depth-Dependent Spatial Variations of Bacterial Communities in Mud Deposits of the Eastern China Marginal Seas
Cited by: 23
Author(s): Yanlu Qiao, Jiwen Liu, Meixun Zhao, Xiaohua Zhang
Software Mentions: 5
Published: over 6 years ago

10.7150/jca.35785

A novel and validated nomogram to predict overall survival for gastric neuroendocrine neoplasms
Cited by: 27
Author(s): Sheng Zhang, Yi Xin Tong, Xin Hua Zhang, Yu Jie Zhang, Xiangjie Xu, Ai Tang Xiao, Teng Fei Chao, Jian Ping Gong
Software Mentions: 5
Published: about 6 years ago

10.1186/s40168-018-0437-0

Species classifier choice is a key consideration when analysing low-complexity food microbiome data
Cited by: 56
Author(s): Aaron M. Walsh, Fiona Crispie, Órla O’Sullivan, Laura Finnegan, Marcus J. Claesson, Paul D. Cotter
Software Mentions: 5
Published: almost 7 years ago

10.3390/ijms20010059

We Are What We Eat: A Stoichiometric and Ecometabolomic Study of Caterpillars Feeding on Two Pine Subspecies of Pinus sylvestris
Cited by: 8
Author(s): Albert Rivas‐Ubach, Josep Peñuelas, José A. Hódar, Michal Oravec, Ljiljana Paša‐Tolić, Otmar Urban, Jordi Sardans
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2020.603692

Shift and Metabolic Potentials of Microbial Eukaryotic Communities Across the Full Depths of the Mariana Trench
Cited by: 3
Author(s): Xiaoyu Zhu, Jiwen Liu, Chun-Xu Xue, Jiwei Tian, Xiao‐Hua Zhang
Software Mentions: 5
Published: about 4 years ago

10.1001/jamanetworkopen.2018.5845

Association Between Early Intravenous Fluids Provided by Paramedics and Subsequent In-Hospital Mortality Among Patients With Sepsis
Cited by: 18
Author(s): Daniel Lane, Hannah Wunsch, Refik Saskin, Sheldon Cheskes, Steve Lin, Laurie J. Morrison, Damon C. Scales
Software Mentions: 5
Published: about 6 years ago

10.18632/aging.102697

Identification of a nomogram based on long non-coding RNA to improve prognosis prediction of esophageal squamous cell carcinoma
Cited by: 45
Author(s): Wenli Li, Jun Li, Hetong Zhao
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0189509

Effects of urbanization on host-pathogen interactions, using Yersinia in house sparrows as a model
Cited by: 14
Author(s): Lieze Rouffaer, Diederik Strubbe, Aimeric Teyssier, Noraine Salleh Hudin, Anne‐Marie Van den Abeele, Ivo Cox, Roel Haesendonck, Michel Delmée, Freddy Haesebrouck, Frank Pasmans, Luc Lens, An Martel
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0241842

Genetic and physiological traits for internal phosphorus utilization efficiency in rice
Cited by: 11
Author(s): Getnet Dino Adem, Yoshiaki Ueda, Patrick E. Hayes, Matthias Wissuwa
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0100994

Combining COPD with Clinical, Pathological and Demographic Information Refines Prognosis and Treatment Response Prediction of Non-Small Cell Lung Cancer
Cited by: 25
Author(s): Joseph Putila, Nancy Lan Guo
Software Mentions: 5
Published: over 10 years ago

10.1016/j.isci.2021.103048

Post-weaning A1/A2 β-casein milk intake modulates depressive-like behavior, brain μ-opioid receptors, and the metabolome of rats
Cited by: 5
Author(s): Aya Osman, Simone Zuffa, Gemma Walton, Elizabeth Fagbodun, Panos Zanos, Polymnia Georgiou, Ian Kitchen, Jonathan R. Swann, Alexis Bailey
Software Mentions: 5
Published: over 3 years ago

10.1099/mgen.0.000190

Genetic analysis of invasive Escherichia coli in Scotland reveals determinants of healthcare-associated versus community-acquired infections
Cited by: 32
Author(s): Cosmika Goswami, Stephen Fox, Matthew T. G. Holden, Martin Connor, Alistair Leanord, Thomas J. Evans
Software Mentions: 5
Published: over 6 years ago

10.1038/s41396-020-0701-8

Comammox Nitrospira within the Yangtze River continuum: community, biogeography, and ecological drivers
Cited by: 85
Author(s): Shufeng Li, Haiying Wu, Liming Chen, Jiawen Wang, Maosheng Zheng, Sitong Liu, Qian Chen, Jinren Ni
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0171710

Mapping the sensory perception of apple using descriptive sensory evaluation in a genome wide association study
Cited by: 46
Author(s): Beatrice Amyotte, Amy Bowen, Travis Banks, Istvan Rajcan, Daryl J. Somers
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41396-020-00773-1

Benchmarking microbial growth rate predictions from metagenomes
Cited by: 45
Author(s): Andrew M. Long, Songjun Hou, J. Cesar Ignacio‐Espinoza, Jed A. Fuhrman
Software Mentions: 5
Published: over 4 years ago

10.1111/1751-7915.13313

Long-term investigation of microbial community composition and transcription patterns in a biogas plant undergoing ammonia crisis
Cited by: 16
Author(s): Martin Fischer, Simon Güllert, Sarah Refai, Sven Künzel, Uwe Deppenmeier, Wolfgang R. Streit, Ruth A. Schmitz
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0212541

The Sport Concussion Assessment Tool (SCAT2) for evaluating civilian mild traumatic brain injury. A pilot normative study
Cited by: 8
Author(s): Andreea Rădoi, María A. Poca, Darío Gándara, Lidia Castro, Mauricio Cevallos, Maria E. Pacios, Juan Sahuquillo
Software Mentions: 5
Published: almost 6 years ago

10.1534/g3.119.400968

Multi-trait Genomic Prediction Model Increased the Predictive Ability for Agronomic and Malting Quality Traits in Barley (<i>Hordeum vulgare</i> L.)
Cited by: 54
Author(s): Madhav Bhatta, Lucı́a Gutiérrez, Lorena Cammarota, Fernanda Cardozo, Silvia Germán, Blanca Gómez-Guerrero, María Fernanda Pardo, Valeria Lanaro, Mercedes Sayas, Ariel J. Castro
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12864-019-6444-0

The transcriptome of Pinus pinaster under Fusarium circinatum challenge
Cited by: 18
Author(s): Laura Hernandez‐Escribano, Erik A. Visser, Eugenia Iturritxa, Rosa Raposo, Sanushka Naidoo
Software Mentions: 5
Published: about 5 years ago

10.1534/g3.119.400612

Natural Genetic Variation Underlying Tiller Development in Barley (<i>Hordeum vulgare</i> L)
Cited by: 6
Author(s): Allison Haaning, Kevin P. Smith, Gina Brown‐Guedira, Shiaoman Chao, Priyanka Tyagi, Gary J. Muehlbauer
Software Mentions: 5
Published: almost 5 years ago

10.1128/mSystems.00130-17

Colonic Butyrate-Producing Communities in Humans: an Overview Using Omics Data
Cited by: 284
Author(s): Marius Vital, André Karch, Dietmar H. Pieper
Software Mentions: 5
Published: about 7 years ago

10.3389/fmicb.2019.02628

Strong Seasonality in Arctic Estuarine Microbial Food Webs
Cited by: 22
Author(s): Colleen T. E. Kellogg, J. W. McClelland, Kenneth H. Dunton, Byron C. Crump
Software Mentions: 5
Published: about 5 years ago

10.1007/s00125-021-05527-y

MAIT cell alterations in adults with recent-onset and long-term type 1 diabetes
Cited by: 5
Author(s): Isabelle Nel, Lucie Beaudoin, Zouriatou Gouda, Camille Rousseau, Pauline Soulard, Matthieu Rouland, Léo Bertrand, Christian Boîtard, Étienne Larger, Agnès Lehuen
Software Mentions: 5
Published: over 3 years ago

10.7759/cureus.1279

Postoperative Fractionated Stereotactic Radiosurgery to the Tumor Bed for Surgically Resected Brain Metastases
Cited by: 2
Author(s): Ryan Cleary, Jessica Meshman, Michael C. Dewan, Liping Du, Anthony J. Cmelak, Guangcheng Luo, Manuel Morales-Paliza, Kyle D. Weaver, Reid C. Thompson, Lola B. Chambless, Albert Attia
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0230221

Driving factors of conifer regeneration dynamics in eastern Canadian boreal old-growth forests
Cited by: 22
Author(s): Maxence Martin, Miguel Montoro Girona, Hubert Morin
Software Mentions: 5
Published: over 4 years ago

10.3389/fpsyg.2019.00575

Looking Beyond Our Similarities: How Perceived (In)Visible Dissimilarity Relates to Feelings of Inclusion at Work
Cited by: 8
Author(s): Onur Şahın, Jojanneke van der Toorn, Wiebren Jansen, Edwin J. Boezeman, Naomi Ellemers
Software Mentions: 5
Published: almost 6 years ago

10.1186/cc13824

Prediction of mortality in adult patients with severe acute lung failure receiving veno-venous extracorporeal membrane oxygenation: a prospective observational study
Cited by: 108
Author(s): Tone Bull Enger, Alois Philipp, Vibeke Videm, Matthias Lubnow, Alexander Wahba, Marcus Fischer, Çhristof Schmid, Thomas Bein, Thomas Müller
Software Mentions: 5
Published: about 11 years ago

10.1038/s41598-021-98300-5

Quantifying and predicting antimicrobials and antimicrobial resistance genes in waterbodies through a holistic approach: a study in Minnesota, United States
Cited by: 4
Author(s): Irene Bueno, Amanda Beaudoin, William A. Arnold, Taegyu Kim, Lara Frankson, Timothy M. LaPara, Kaushi S. T. Kanankege, Kristine H. Wammer, Randall S. Singer
Software Mentions: 5
Published: over 3 years ago

10.1093/sleep/zsy186

Identifying and validating blood mRNA biomarkers for acute and chronic insufficient sleep in humans: a machine learning approach
Cited by: 30
Author(s): Emma Laing, Carla S. Möller-Levet, Derk‐Jan Dijk, Simon N. Archer
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-021-96633-9

Spatio-seasonal variation of water quality influenced by land use and land cover in Lake Muhazi
Cited by: 15
Author(s): Edovia Dufatanye Umwali, Alishir Kurban, Alain Isabwe, Richard Mind’je, Hossein Azadi, Zengkun Guo, Madeleine Udahogora, Anathalie Nyirarwasa, Jeanine Umuhoza, Vincent Nzabarinda, Aboubakar Gasirabo, Gulnur Sabirhazi
Software Mentions: 5
Published: over 3 years ago

10.3389/fpls.2018.01257

Combinations of Abiotic Factors Differentially Alter Production of Plant Secondary Metabolites in Five Woody Plant Species in the Boreal-Temperate Transition Zone
Cited by: 68
Author(s): John L. Berini, Stephen A. Brockman, Adrian D. Hegeman, Peter B. Reich, Ranjan Muthukrishnan, Rebecca Montgomery, James D. Forester
Software Mentions: 5
Published: over 6 years ago

10.1002/ctm2.30

Development and external validation of a predictive scoring system associated with metastasis of T1‐2 colorectal tumors to lymph nodes
Cited by: 15
Author(s): Shaobo Mo, Zheng Zhou, Weixing Dai, Wenqiang Xiang, Lingyu Han, Long Zhang, Renjie Wang, Sanjun Cai, Qingguo Li, Guoxiang Cai
Software Mentions: 5
Published: almost 5 years ago

10.1186/s42523-021-00095-3

Evolution of rumen and oral microbiota in calves is influenced by age and time of weaning
Cited by: 19
Author(s): Nida Amin, Sarah Schwarzkopf, Asako Kinoshita, Johanna Tröscher-Mußotter, Sven Dänicke, Amélia Camarinha‐Silva, Korinna Huber, Jana Frahm, Jana Seifert
Software Mentions: 5
Published: almost 4 years ago

10.3389/fgene.2020.522831

Systematic Analyses of the Differentially Expressed Alternative Splicing Events in Gastric Cancer and Its Clinical Significance
Cited by: 2
Author(s): Changwei Lin, Bowen Yu, Mao Zhang, Yifei Chen, Liang Li, Delong Zhao
Software Mentions: 5
Published: about 4 years ago

10.3389/fpls.2020.00545

Spatiotemporal Modulation of Flavonoid Metabolism in Blueberries
Cited by: 38
Author(s): Catrin S. Günther, Andrew P. Dare, Tony K. McGhie, Cecilia Deng, Declan J. Lafferty, Blue Plunkett, Ella Grierson, Janice L. Turner, Laura Jaakola, Nick W. Albert, Richard V. Espley
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-021-91399-6

Bacillus amyloliquefaciens FH-1 significantly affects cucumber seedlings and the rhizosphere bacterial community but not soil
Cited by: 15
Author(s): Jingjing Wang, Sheng Xu, Rong Yang, Wei Zhao, Dan Zhu, Xiaoxia Zhang, Zhiyong Huang
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0193417

Sex- and brain region-specific patterns of gene expression associated with socially-mediated puberty in a eusocial mammal
Cited by: 20
Author(s): Mariela Faykoo-Martinez, D. Ashley Monks, Iva B. Zovkic, Melissa M. Holmes
Software Mentions: 5
Published: almost 7 years ago

10.3389/fpls.2016.00779

Root Foraging Performance and Life-History Traits
Cited by: 26
Author(s): Martin Weiser, Tomáš Koubek, Tomáš Herben
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-020-57968-x

Prognostic Nomogram For Locoregionally Advanced Nasopharyngeal Carcinoma
Cited by: 15
Author(s): Yanming Jiang, Song Qu, Xin-Bin Pan, Shan Huang, Xiaodong Zhu
Software Mentions: 5
Published: about 5 years ago

10.1186/s13148-021-01064-y

DNA methylation and gene expression integration in cardiovascular disease
Cited by: 21
Author(s): Guillermo Palou-Márquez, Isaac Subirana, Lara Nonell, Alba Fernández‐Sanlés, Roberto Elosúa
Software Mentions: 5
Published: almost 4 years ago

10.1186/s13148-020-00829-1

Underestimated effect of intragenic HIV-1 DNA methylation on viral transcription in infected individuals
Cited by: 12
Author(s): Sam Kint, Wim Trypsteen, Ward De Spiegelaere, Eva Malatinková, Sabine Kinloch-de Loës, Tim De Meyer, Wim Van Criekinge, Linos Vandekerckhove
Software Mentions: 5
Published: almost 5 years ago

10.3389/fcimb.2021.637018

Identification of Microbiome Etiology Associated With Drug Resistance in Pleural Empyema
Cited by: 12
Author(s): Zhaoyan Chen, Hang Cheng, Zhao Cai, Qingjun Wei, Jinlong Li, Jing Liang, Wenshu Zhang, Zhijian Yu, Dongjing Liu, Lei Liu, Zhenqiang Zhang, Ke Wang, Liang Yang
Software Mentions: 5
Published: almost 4 years ago

10.1038/s41598-019-48488-4

Predicting Breast Cancer in Breast Imaging Reporting and Data System (BI-RADS) Ultrasound Category 4 or 5 Lesions: A Nomogram Combining Radiomics and BI-RADS
Cited by: 75
Author(s): Weiquan Luo, Qing-xiu Huang, Xiaowen Huang, Hang-Tong Hu, Fuqiang Zeng, Wei Wang
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-018-32111-z

Plant growth-promoting rhizobacteria promote plant size inequality
Cited by: 23
Author(s): Alan C. Gange, Kiran R. Gadhave
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-018-34619-w

A multiscale study of fungal endophyte communities of the foliar endosphere of native rubber trees in Eastern Amazon
Cited by: 28
Author(s): Aline B. M. Vaz, Paula Luize Camargos Fonseca, Fernanda Badotti, Demetra Skaltsas, Luiz Marcelo Ribeiro Tomé, Allefi C. Silva, Mayara C. Cunha, Marco A. Soares, Vera Lúcia dos Santos, Guilherme Oliveira, Priscilla Chaverri, Aristóteles Goés-Neto
Software Mentions: 5
Published: over 6 years ago

10.1038/s41416-018-0292-6

Smoking cessation sharply reduced lung cancer mortality in a historical cohort of 3185 Chinese silicotic workers from 1981 to 2014
Cited by: 10
Author(s): Lap Ah Tse, Xiaona Lin, Wentao Li, Hong Qiu, Chi Kuen Chan, Feng Wang, Ignatius Tak-sun Yu, Chi Chiu Leung
Software Mentions: 5
Published: about 6 years ago

10.3389/fonc.2021.637193

Oncogenic B-Myb Is Associated With Deregulation of the DREAM-Mediated Cell Cycle Gene Expression Program in High Grade Serous Ovarian Carcinoma Clinical Tumor Samples
Cited by: 5
Author(s): Audra N. Iness, Lisa Rubinsak, Steven J. Meas, Jessica Chaoul, Sadia Sayeed, Raghavendra Pillappa, Sarah M. Temkin, Mikhail G. Dozmorov, Larisa Litovchick
Software Mentions: 5
Published: almost 4 years ago

10.1038/s41598-018-24868-0

Nomogram-based prediction of rebleeding in small bowel bleeding patients: the ‘PRSBB’ score
Cited by: 8
Author(s): Genta Uchida, Yoshiki Hirooka, Masanao Nakamura, Osamu Watanabe, Takeshi Yamamura, Masayuki Matsushita, Hiroki Suhara, Takuya Ishikawa, Kazuhiro Furukawa, Kohei Funasaka, Eizaburo Ohno, Ryoji Miyahara, Hidemi Goto
Software Mentions: 5
Published: almost 7 years ago

10.1038/s41598-019-44042-4

Refining the Genomic Region Containing a Major Locus Controlling Fruit Maturity in Peach
Cited by: 12
Author(s): Hanny Elsadr, Sherif M. Sherif, Travis Banks, Daryl J. Somers, Jayasankar Subramanian
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pntd.0004549

Transforming Clinical Data into Actionable Prognosis Models: Machine-Learning Framework and Field-Deployable App to Predict Outcome of Ebola Patients
Cited by: 52
Author(s): Andrés Colubri, Thomas Silver, Terrence Fradet, Kalliroi Retzepi, Benjamin N. Fry, Pardis C. Sabeti
Software Mentions: 5
Published: almost 9 years ago

10.18632/aging.103399

Changes of saliva microbiota in the onset and after the treatment of diabetes in patients with periodontitis
Cited by: 27
Author(s): Yang Ying, Shili Liu, Yihua Wang, Zhibin Wang, Wei Ding, Xiaoyuan Sun, Kunlun He, Qiang Feng, Xiandang Zhang
Software Mentions: 5
Published: over 4 years ago

10.3389/fonc.2021.664346

Total Lesion Glycolysis Estimated by a Radiomics Model From CT Image Alone
Cited by: 1
Author(s): Hongwei Si, Xinzhong Hao, Lianyu Zhang, Xin Xu, Jianzhong Cao, Ping Wu, Li Li, Zhiyong Wu, Shengyang Zhang, Sijin Li
Software Mentions: 5
Published: over 3 years ago

10.1002/2211-5463.12744

Fecal microbiota transplantation results in bacterial strain displacement in patients with inflammatory bowel diseases
Cited by: 13
Author(s): Manli Zou, Zhuye Jie, Bota Cui, Honggang Wang, Qiang Feng, Yuanqiang Zou, Xiuqing Zhang, Huanming Yang, Jian Wang, Faming Zhang, Huijue Jia
Software Mentions: 5
Published: about 5 years ago

10.12688/f1000research.18705.2

Analysis of correlation-based biomolecular networks from different omics data by fitting stochastic block models
Cited by: 1
Author(s): Katharina Baum, Jagath C. Rajapakse, Francisco Azuaje
Software Mentions: 5
Published: over 5 years ago

10.1038/srep43465

Parasitism perturbs the mucosal microbiome of Atlantic Salmon
Cited by: 86
Author(s): Martin S. Llewellyn, S. Leadbeater, Carlos García, François‐Étienne Sylvain, María Custodio, Keng Pee Ang, Frank C. Powell, Gary R. Carvalho, Simon Creer, J. M. Elliot, Nicolas Derôme
Software Mentions: 5
Published: almost 8 years ago

10.1111/eva.12803

Evidence for adaptive responses to historic drought across a native plant species range
Cited by: 38
Author(s): Erin E. Dickman, Lillie K. Pennington, Steven J. Franks, Jason P. Sexton
Software Mentions: 5
Published: over 5 years ago

10.1111/eva.13182

Host evolutionary relationships explain tree mortality caused by a generalist pest–pathogen complex
Cited by: 8
Author(s): Shannon C. Lynch, Akif Eskalen, Gregory S. Gilbert
Software Mentions: 5
Published: about 4 years ago

10.1007/s00701-018-3681-y

Impaired cerebral compensatory reserve is associated with admission imaging characteristics of diffuse insult in traumatic brain injury
Cited by: 20
Author(s): Frederick A. Zeiler, Dong-Joo Kim, Manuel Cabeleira, Leanne Calviello, Peter Smielewski, Marek Czosnyka
Software Mentions: 5
Published: over 6 years ago

10.1155/2020/8068913

Machine Learning Analysis of Image Data Based on Detailed MR Image Reports for Nasopharyngeal Carcinoma Prognosis
Cited by: 13
Author(s): Chunyan Cui, Shunxin Wang, Jian Zhou, Annan Dong, Fei Xie, Haojiang Li, Lizhi Liu
Software Mentions: 5
Published: almost 5 years ago

10.3390/foods9101386

The Use of Less Conventional Meats or Meat with High pH Can Lead to the Growth of Undesirable Microorganisms during Natural Meat Fermentation
Cited by: 13
Author(s): Christina Charmpi, Emiel Niels Van Reckem, Nikoleta Sameli, David Van der Veken, Luc De Vuyst, Frédéric Leroy
Software Mentions: 5
Published: over 4 years ago

10.1007/s00330-019-06513-0

Optimal timing for prediction of pathologic complete response to neoadjuvant chemoradiotherapy with diffusion-weighted MRI in patients with esophageal cancer
Cited by: 24
Author(s): Alicia S Borggreve, S.E. Heethuis, M. Boekhoff, Lucas Goense, Peter S.N. van Rossum, Lodewijk A.A. Brosens, Astrid L.H.M.W. van Lier, Richard van Hillegersberg, J J W Lagendijk, Stella Mook, Jelle P. Ruurda, Gert J. Meijer
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0023024

Temporal Retinal Nerve Fiber Loss in Patients with Spinocerebellar Ataxia Type 1
Cited by: 56
Author(s): Sarah Stricker, Timm Oberwahrenbrock, Hanna Zimmermann, Jan Schroeter, Matthias Endres, Alexander U. Brandt, Friedemann Paul
Software Mentions: 5
Published: over 13 years ago

10.3390/biology10010039

Role of Transportome in the Gills of Chinese Mitten Crabs in Response to Salinity Change: A Meta-Analysis of RNA-Seq Datasets
Cited by: 11
Author(s): Adeel Malik, Chang-Bae Kim
Software Mentions: 5
Published: about 4 years ago

10.7717/peerj.6806

Shared genomic outliers across two divergent population clusters of a highly threatened seagrass
Cited by: 25
Author(s): Nikki Leanne Phair, Robert J. Toonen, Ingrid S. Knapp, Sophie von der Heyden
Software Mentions: 5
Published: almost 6 years ago

10.7717/peerj.8850

Monitoring the influx of new species through citizen science: the first introduced ant in Denmark
Cited by: 11
Author(s): Julie Koch Sheard, Nathan J. Sanders, Carsten Gundlach, Sämi Schär, Rasmus Stenbak Larsen
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12885-016-2652-z

A nomogram for predicting pathological complete response in patients with human epidermal growth factor receptor 2 negative breast cancer
Cited by: 9
Author(s): Xi Jin, Yi Jiang, Sheng Chen, Ke Yu, Ding Ma, Wei Sun, Zhi Min Shao, Gen Hong Di
Software Mentions: 4
Published: over 8 years ago

10.1186/s12889-021-10421-8

Late initiation of antiretroviral therapy: inequalities by educational level despite universal access to care and treatment
Cited by: 12
Author(s): Amanda Souza Rodrigues, Cláudio J. Struchiner, Lara E. Coelho, Valdiléa G. Veloso, Beatriz Grinsztejn, Paula M. Luz
Software Mentions: 4
Published: almost 4 years ago

10.3389/fmicb.2020.572534

Coral-Associated Viral Assemblages From the Central Red Sea Align With Host Species and Contribute to Holobiont Genetic Diversity
Cited by: 12
Author(s): Anny Cárdenas, Jin Ye, Maren Ziegler, Jérôme P. Payet, Ryan McMinds, Rebecca Vega Thurber, Christian R. Voolstra
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2018.01188

Canola Root–Associated Microbiomes in the Canadian Prairies
Cited by: 67
Author(s): Chih Ying Lay, Terrence H. Bell, Chantal Hamel, K. Neil Harker, Ramona M. Mohr, Charles W. Greer, Étienne Yergeau, Marc St‐Arnaud
Software Mentions: 4
Published: over 6 years ago

10.1016/j.patter.2020.100008

gfoRmula: An R Package for Estimating the Effects of Sustained Treatment Strategies via the Parametric g-formula
Cited by: 30
Author(s): Seán McGrath, Victoria Lin, Zilu Zhang, Lucia Petito, Roger Logan, Miguel A. Hernán, Jessica Young
Software Mentions: 4
Published: over 4 years ago

10.3390/ani11020450

In Vitro Assessment of Enteric Methane Emission Potential of Whole-Plant Barley, Oat, Triticale and Wheat
Cited by: 5
Author(s): Isaac A. Aboagye, Christine Rosser, V. S. Baron, K. A. Beauchemin
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12885-021-08201-z

Predictive nomogram for postoperative pancreatic fistula following pancreaticoduodenectomy: a retrospective study
Cited by: 8
Author(s): Jian Shen, Feng Guo, Yan Sun, Jingyuan Zhao, Jin Hu, Zunxiang Ke, Yushun Zhang, Xin Jin, Heshui Wu
Software Mentions: 4
Published: over 3 years ago

10.1186/s40462-020-00221-x

Foraging movements of breeding Kelp Gulls in South Africa
Cited by: 4
Author(s): Katharina Reusch, Nicolás M. Suárez, Peter G. Ryan, Lorien Pichegru
Software Mentions: 4
Published: over 4 years ago

10.1186/s12870-020-2275-z

Conserved defense responses between maize and sorghum to Exserohilum turcicum
Cited by: 10
Author(s): Xiaoyue Zhang, Samuel B. Fernandes, Christopher Kaiser, Pragya Adhikari, Patrick J. Brown, Santiago X. Mideros, Tiffany M. Jamann
Software Mentions: 4
Published: almost 5 years ago

10.5334/joc.30

The Manipulability Effect in Object Naming
Cited by: 6
Author(s): Anna Lorenzoni, Francesca Peressotti, Eduardo Navarrete
Software Mentions: 4
Published: about 7 years ago

Projects: cran: Hmisc

Papers Mentioning Hmisc 1,000