bioconductor: clusterProfiler | Projects

10.3390/ijms21165923

Oxidant-Induced Alterations in the Adipocyte Transcriptome: Role of the Na,K-ATPase Oxidant Amplification Loop
Cited by: 7
Author(s): Komal Sodhi, James Denvir, Jiang Liu, Juan Sanabria, Yiliang Chen, Roy L. Silverstein, Zijian Xie, Nader G. Abraham, Joseph I. Shapiro
Software Mentions: 7
Published: about 6 years ago

10.18632/oncotarget.27808

Identification of novel prognostic markers of survival time in high-risk neuroblastoma using gene expression profiles
Cited by: 6
Author(s): Abdulazeez Giwa, Azeez Ayomide Fatai, Junaid Gamieldien, Alan Christoffels, Hocine Bendou
Software Mentions: 7
Published: almost 6 years ago

10.3389/fonc.2020.01444

Development and Validation of an m6A RNA Methylation Regulator-Based Signature for Prognostic Prediction in Cervical Squamous Cell Carcinoma
Cited by: 32
Author(s): Jianji Pan, Lichao Xu, Hongda Pan
Software Mentions: 7
Published: about 6 years ago

10.1155/2021/8897313

Systematic Investigation of the Effect of Powerful Tianma Eucommia Capsule on Ischemic Stroke Using Network Pharmacology
Cited by: 4
Author(s): Pengcheng Feng, Guixia Li, Yuandong Huang, Jinhong Pei
Software Mentions: 7
Published: over 5 years ago

10.3389/fonc.2019.00523

Comprehensive Gene Expression Analysis in NMIBC Using RNA-seq Reveals New Therapy Strategies
Cited by: 11
Author(s): Xiaoliang Chen, Fuquan Jiang, Jia Chen, Ming Liu, Yong-Hao Nan, Licheng Qu, Qingkuo Kong, Fangfang Hou, Wenshan Luo, Wanli Na, Xin Jin, Jiufeng Tan
Software Mentions: 7
Published: over 7 years ago

10.3389/fonc.2021.671892

A Liquid-Liquid Phase Separation-Related Gene Signature as Prognostic Biomarker for Epithelial Ovarian Cancer
Cited by: 9
Author(s): Yan Qiu, Min Pan, Xuemei Chen
Software Mentions: 7
Published: over 5 years ago

10.1038/s42003-020-0969-2

Integrative genome-wide analysis reveals the role of WIP proteins in inhibition of growth and development
Cited by: 11
Author(s): Maria Victoria Gómez Roldán, Farhaj Izhaq, Marion Verdenaud, John Saviour Yaw Eleblu, Aimen Haraghi, Vivien Sommard, Pierre Chambrier, David Latrasse, Teddy Jégu, Moussa Benhamed, Judit Szécsi, Mohammed Bendahmane, Adnane Boualem, Abdelhafid Bendahmane
Software Mentions: 7
Published: over 6 years ago

10.3389/fnins.2021.600462

Dysregulation of MicroRNAs and PIWI-Interacting RNAs in a Caenorhabditis elegans Parkinson’s Disease Model Overexpressing Human α-Synuclein and Influence of tdp-1
Cited by: 10
Author(s): Linjing Shen, Changliang Wang, Liang Chen, Garry Wong
Software Mentions: 7
Published: over 5 years ago

10.3389/fgene.2020.612037

An Immune Gene-Related Five-lncRNA Signature for to Predict Glioma Prognosis
Cited by: 20
Author(s): Xinzhuang Wang, Ming Gao, Junyi Ye, Qiuyi Jiang, Quan Yang, Cheng Zhang, Shengtao Wang, Jian Zhang, Ligang Wang, Jianing Wu, Hua Zhan, Xu Hou, Dayong Han, Shen Zhao
Software Mentions: 7
Published: almost 6 years ago

10.3389/fnins.2021.621121

Analysis of the Neuroproteome Associated With Cell Therapy After Intranigral Grafting in a Mouse Model of Parkinson Disease
Cited by: 1
Author(s): Hassan Dakik, Sarah Mantash, Ali Nehme, Firas Kobeissy, Masoud Zabet-Moghaddam, Parvin Mirzaei, Yehia Mechref, Afsaneh Gaillard, Laetitia Prestoz, Kazem Zibara
Software Mentions: 7
Published: over 5 years ago

10.3389/fgene.2021.739470

Construction on of a Ferroptosis-Related lncRNA-Based Model to Improve the Prognostic Evaluation of Gastric Cancer Patients Based on Bioinformatics
Cited by: 19
Author(s): Jing Pan, Xinyue Zhang, Xuedong Fang, Zhuoyuan Xin
Software Mentions: 7
Published: about 5 years ago

10.3389/fnmol.2018.00225

NFIX Circular RNA Promotes Glioma Progression by Regulating miR-34a-5p via Notch Signaling Pathway
Cited by: 86
Author(s): Haidong Xu, Yu Zhang, Qi Ling, Lijuan Ding, Hong Jiang, Haojun Yu
Software Mentions: 7
Published: about 8 years ago

10.3389/fmolb.2020.565530

Cross-Sectional Transcriptional Analysis of the Aging Murine Heart
Cited by: 4
Author(s): Matthew Greenig, Andrew Melville, Derek Huntley, Mark Isalan, Michał Mielcarek
Software Mentions: 7
Published: about 6 years ago

10.3389/fgene.2020.00396

Single-Cell Transcriptomic Analysis Reveals Mitochondrial Dynamics in Oocytes of Patients With Polycystic Ovary Syndrome
Cited by: 34
Author(s): Lingbin Qi, Boxuan Liu, Xian Chen, Qiwei Liu, Wanqiong Li, Bo Lv, Xiaoyu Xu, Lu Wang, Qiao Zeng, Jinfeng Xue, Zhigang Xue
Software Mentions: 7
Published: over 6 years ago

10.3389/fgene.2021.744113

Identification and Validation of Hypoxia-Related lncRNA Signature as a Prognostic Model for Hepatocellular Carcinoma
Cited by: 8
Author(s): Chengke Zhou, Huajun Zhang, Liqing Lu
Software Mentions: 7
Published: about 5 years ago

10.1038/s41598-017-05377-y

Whole transcriptome sequencing of Pseudomonas syringae pv. actinidiae-infected kiwifruit plants reveals species-specific interaction between long non-coding RNA and coding genes
Cited by: 33
Author(s): Zupeng Wang, Yifei Liu, Li Li, Dawei Li, Qiong Zhang, Yangtao Guo, Shuaibin Wang, Caihong Zhong, Hongwen Huang
Software Mentions: 7
Published: over 9 years ago

10.3389/fgene.2020.577585

Development of an miRNA-Array-Based Diagnostic Signature for Periodontitis
Cited by: 11
Author(s): Sanli Jin, Jianguo Zhou, Xiaoyan Guan, Guohui Bai, Jianguo Liu, Liangwen Chen
Software Mentions: 7
Published: almost 6 years ago

10.3389/fgene.2021.737656

Integrated Analysis of the Expression Characteristics, Prognostic Value, and Immune Characteristics of PPARG in Breast Cancer
Cited by: 5
Author(s): Jianbin Wu, Mingmin Luo, Zhuangwei Chen, Lei Li, Xiaoxi Huang
Software Mentions: 7
Published: about 5 years ago

10.3389/fgene.2020.566579

Bioinformatics Analysis Discovers Microtubular Tubulin Beta 6 Class V (TUBB6) as a Potential Therapeutic Target in Glioblastoma
Cited by: 12
Author(s): Lan Jiang, Xiaolong Zhu, Hui Yang, Tianbing Chen, Kun Lv
Software Mentions: 7
Published: about 6 years ago

10.1155/2021/6680883

MXRA5 Is a Novel Immune-Related Biomarker That Predicts Poor Prognosis in Glioma
Cited by: 8
Author(s): Jinzhang Sun, Jinhao Zhang, Jia-Bo Li, Feng Yuan, Luqing Tong, Xu-Ya Wang, Lulu Chen, Xiaoguang Fan, Yiming Zhang, Xiao Ren, Chen Zhang, Shukun Yu, Xuejun Yang
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-020-66224-1

Genomic deregulation of PRMT5 supports growth and stress tolerance in chronic lymphocytic leukemia
Cited by: 5
Author(s): Ann-Kathrin Schnormeier, Claudia Pommerenke, Maren Kaufmann, Hans Drexler, Max Koeppel
Software Mentions: 6
Published: over 6 years ago

10.3389/fonc.2020.00424

BTK Has Potential to Be a Prognostic Factor for Lung Adenocarcinoma and an Indicator for Tumor Microenvironment Remodeling: A Study Based on TCGA Data Mining
Cited by: 82
Author(s): Kewei Bi, Xin Wei, Xiaoxue Qin, Bo Li
Software Mentions: 6
Published: over 6 years ago

10.1186/s12967-021-03012-z

Cancer-associated fibroblast infiltration in gastric cancer: the discrepancy in subtypes pathways and immunosuppression
Cited by: 18
Author(s): Xu Liu, Li Yao, Jingkun Qu, Lin Liu, Ning Lü, Jiansheng Wang, Zhang Jia
Software Mentions: 6
Published: about 5 years ago

10.1155/2020/8833438

Systematic Investigation of mRNA N6-Methyladenosine Machinery in Primary Prostate Cancer
Cited by: 7
Author(s): Mei Jiang, Yu‐Chuan Lu, Dongxia Duan, Hongxiang Wang, Gaoya Man, Ching Kang, Kesaier Abulimiti, Yao Li
Software Mentions: 6
Published: almost 6 years ago

10.3389/fonc.2021.684242

Integrated Analysis of a Competing Endogenous RNA Network Reveals a Prognostic lncRNA Signature in Bladder Cancer
Cited by: 2
Author(s): Mou Peng, Cheng Xu, Xiong Wang, Yi Lee, Yinhuai Wang
Software Mentions: 6
Published: about 5 years ago

10.3389/fgene.2020.634634

A Novel Prognostic Model of Early-Stage Lung Adenocarcinoma Integrating Methylation and Immune Biomarkers
Cited by: 17
Author(s): Jin Ren, Yun Yang, Chuanyin Li, Lu Xie, Ronggui Hu, Qin Xiong, Menghuan Zhang
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2020.626555

Development and Validation of an Immune-Related Gene-Pair Model of High-Grade Serous Ovarian Cancer After Platinum-Based Chemotherapy
Cited by: 0
Author(s): Jiaxing Lin, Xiao Xu, Dan Sun, Tianren Li
Software Mentions: 6
Published: over 5 years ago

10.3389/fgene.2021.739975

Prognostic Role of ceRNA Network in Immune Infiltration of Hepatocellular Carcinoma
Cited by: 7
Author(s): Qianhui Xu, Shaohuai Chen, Yuanbo Hu, Wen Huang
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-021-91214-2

Chamber-enriched gene expression profiles in failing human hearts with reduced ejection fraction
Cited by: 12
Author(s): Xin Luo, Jun Yin, Denise Dwyer, Tracy M. Yamawaki, Hong Zhou, Hongfei Ge, Chun-Ya Han, Artem Shkumatov, K. F. Snyder, Brandon Ason, Chi-Ming Li, Oliver Homann, Marina Stolina
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2021.685026

A Novel Prognostic Signature Based on Metabolism-Related Genes to Predict Survival and Guide Personalized Treatment for Head and Neck Squamous Carcinoma
Cited by: 8
Author(s): Ying Liu, Youliang Weng, Yijie Pan, Ze‐Ning Huang, Xiaochuan Chen, Wenquan Hong, Ting Lin, Lihua Wang, Wei Liu, Sufang Qiu
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2020.01001

Network-Based Approach to Identify the Antiproliferative Mechanisms of Bruceine D in Breast Cancer From the Cancer Genome Atlas
Cited by: 3
Author(s): Sai Tian, Rui Jiang, Weidong Zhang
Software Mentions: 6
Published: over 6 years ago

10.3389/fonc.2021.592211

An Immune-Related Gene Pairs Signature Predicts Prognosis and Immune Heterogeneity in Glioblastoma
Cited by: 1
Author(s): Nijia Zhang, Ming Ge, Tao Jiang, Xiaoxia Peng, Hailang Sun, Qi Xiang, Zhewei Zou, Dapeng Li
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2021.697198

A Pyroptosis-Related Gene Signature for Predicting Survival in Glioblastoma
Cited by: 40
Author(s): Xinyu Li, Luyu Zhang, Xueyuan Li, Xitao Yang, Lixin Su
Software Mentions: 6
Published: about 5 years ago

10.3389/fonc.2021.675545

Identification of a Ferroptosis-Related LncRNA Signature as a Novel Prognosis Model for Lung Adenocarcinoma
Cited by: 52
Author(s): Lu Lu, Leping Liu, Qiangqiang Zhao, Rong Gui, Qiancheng Zhao
Software Mentions: 6
Published: over 5 years ago

10.3389/fnins.2019.00392

Data-Driven Analysis of Age, Sex, and Tissue Effects on Gene Expression Variability in Alzheimer's Disease
Cited by: 19
Author(s): Lavida R. K. Brooks, George I. Mias
Software Mentions: 6
Published: over 7 years ago

10.3389/fonc.2021.636479

An Immune Cell-Based Signature Associating With EMT Phenotype Predicts Postoperative Overall Survival of ESCC
Cited by: 4
Author(s): Hongliang Yu, Dayong Gu, Chao Yang, Jianhua Xu, Feng Yan, Xu He
Software Mentions: 6
Published: over 5 years ago

10.3389/fgene.2021.698040

Identification of a Ferroptosis Gene Set That Mediates the Prognosis of Squamous Cell Carcinoma of the Head and Neck
Cited by: 1
Author(s): Chunyan Li, Xuemin Wang, Rujia Qin, Zhaoming Zhong, Chuanzheng Sun
Software Mentions: 6
Published: about 5 years ago

10.1089/cmb.2020.0081

GeneDMRs: An R Package for Gene-Based Differentially Methylated Regions Analysis
Cited by: 5
Author(s): Xiao Wang, Dan Hao, Haja N. Kadarmideen
Software Mentions: 6
Published: over 5 years ago

10.1155/2021/6676537

Machine Learning for Building Immune Genetic Model in Hepatocellular Carcinoma Patients
Cited by: 2
Author(s): Jun Liu, Zheng Chen, Wenli Li
Software Mentions: 6
Published: over 5 years ago

10.1155/2021/5583400

Identification and Validation of Autophagy-Related Gene Nomograms to Predict the Prognostic Value of Patients with Cervical Cancer
Cited by: 3
Author(s): Jinqun Jiang, Hongxing Xu, Yihao Wang, Hai Lü
Software Mentions: 6
Published: over 5 years ago

10.3389/fgene.2021.612011

TGFβ1: An Indicator for Tumor Immune Microenvironment of Colon Cancer From a Comprehensive Analysis of TCGA
Cited by: 3
Author(s): Jinyan Wang, Jinqiu Wang, Quan Gu, Yan Yang, Yajun Ma, Quan’an Zhang
Software Mentions: 6
Published: over 5 years ago

10.1155/2020/5786053

Integrating Network Pharmacology with Molecular Docking to Unravel the Active Compounds and Potential Mechanism of Simiao Pill Treating Rheumatoid Arthritis
Cited by: 16
Author(s): Mengshi Tang, Xiaoqing Xie, Pan Yi, Jin Seok Kang, Jiafen Liao, Wenqun Li, Fen Li
Software Mentions: 6
Published: almost 6 years ago

10.3389/fgene.2020.565206

Identification and Validation of Two Lung Adenocarcinoma-Development Characteristic Gene Sets for Diagnosing Lung Adenocarcinoma and Predicting Prognosis
Cited by: 10
Author(s): Cheng Liu, Xiang Li, Huili Shao, Dan Li
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-021-85848-5

Abnormal upregulation of cardiovascular disease biomarker PLA2G7 induced by proinflammatory macrophages in COVID-19 patients
Cited by: 18
Author(s): Yang Li, Yongzhong Jiang, Yi Zhang, Naizhe Li, Qiangling Yin, Linlin Liu, Xin Lv, Yan Liu, Aqian Li, Bin Fang, Jiajia Li, Hengping Ye, Gang Ye, Xiaoxian Cui, Yang Liu, Yuanyuan Qu, Chuan Li, Jiandong Li, Dexin Li, Zhongtao Gai, Shiwen Wang, Faxian Zhan, Mifang Liang
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-86048-x

A ceRNA-associated risk model predicts the poor prognosis for head and neck squamous cell carcinoma patients
Cited by: 9
Author(s): Yuzi Xu, Fengqin Xu, Yiming Lv, Siyuan Wang, Jia Li, Chuan Zhou, Jimin Jiang, Binbin Xie, Fuming He
Software Mentions: 6
Published: over 5 years ago

10.1155/2021/6635526

Construction and Validation of a Ferroptosis-Related Prognostic Model for Gastric Cancer
Cited by: 33
Author(s): Xiaotao Jiang, Qiaofeng Yan, Linling Xie, Shiqi Xu, Kailin Jiang, Jiahua Huang, Yi Wen, Yanhua Yan, Junhui Zheng, Shiyun Tang, Kechao Nie, Zhihua Zheng, Jinglin Pan, Peng Liu, Yuancheng Huang, Xingrui Yan, Yushan Zou, Xuan Chen, Fengbin Liu, Peiwu Li, Kunhai Zhuang
Software Mentions: 6
Published: over 5 years ago

10.21203/rs.3.rs-362886/v1

Maternal-Fetal Immune Responses in Pregnant Women Infected with SARS-CoV-2
Cited by: 6
Author(s): Valeria Garcia‐Flores, Roberto Romero, Yi Xu, Kevin R. Theis, Marcia Arenas-Hernández, Derek Miller, Azam Peyvandipour, José Galaz, Dustyn Levenson, Gaurav Bhatti, Meyer Gershater, Errile Pusod, David Kracht, Violetta Florova, Yaozhu Leng, Tao Li, Megan Faucett, Robert Para, Chaur‐Dong Hsu, Gary Zhang, Adi L. Tarca, Roger Piqué-Regi, Nardhy Gomez-López
Software Mentions: 6
Published: over 5 years ago

10.3389/fgene.2021.723519

Time Course Transcriptomic Study Reveals the Gene Regulation During Liver Development and the Correlation With Abdominal Fat Weight in Chicken
Cited by: 8
Author(s): Siyuan Xing, Ranran Liu, Guiping Zhao, M.A.M. Groenen, Ole Madsen, Lu Liu, Maiqing Zheng, Qiao Wang, Zhou Wu, R.P.M.A. Crooijmans, Jie Wen
Software Mentions: 6
Published: about 5 years ago

10.3389/fgene.2021.701065

Identification of Tumor Antigens and Immune Landscape in Glioblastoma for mRNA Vaccine Development
Cited by: 12
Author(s): Liguo Ye, Long Wang, Jian Yang, Ping Hu, Chunyu Zhang, Shiao Tong, Zhennan Liu, Daofeng Tian
Software Mentions: 6
Published: about 5 years ago

10.1186/s12967-021-03078-9

Low CCL19 expression is associated with adverse clinical outcomes for follicular lymphoma patients treated with chemoimmunotherapy
Cited by: 1
Author(s): Yu Zhou, Shasha Wang, Yunxia Tao, Haizhu Chen, Yan Qin, Xiaohong He, Shengyu Zhou, Peng Liu, Jianliang Yang, Sheng Yang, Lin Gui, Ning Lou, Zhishang Zhang, Jiarui Yao, Xiaohong Han, Yuankai Shi
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-020-69451-8

Intrinsic transcriptomic sex differences in human endothelial cells at birth and in adults are associated with coronary artery disease targets
Cited by: 31
Author(s): Robin Hartman, Daniek Kapteijn, Saskia Haitjema, Mireille N. Bekker, Michal Mokrý, Gérard Pasterkamp, Mete Civelek, Hester M. den Ruijter
Software Mentions: 6
Published: about 6 years ago

10.3389/fgene.2020.00099

A FITM1-Related Methylation Signature Predicts the Prognosis of Patients With Non-Viral Hepatocellular Carcinoma
Cited by: 4
Author(s): J Chen, X Wang, Wei Li, Chao Shang, T Chen, Y Chen
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-019-50119-x

Tissue-specific mouse mRNA isoform networks
Cited by: 12
Author(s): Gaurav Kandoi, Julie A. Dickerson
Software Mentions: 6
Published: about 7 years ago

10.3389/fgene.2021.675260

Aluminum or Low pH – Which Is the Bigger Enemy of Barley? Transcriptome Analysis of Barley Root Meristem Under Al and Low pH Stress
Cited by: 16
Author(s): Miriam Szurman-Zubrzycka, Karolina Chwiałkowska, Magdalena Niemira, Mirosław Kwaśniewski, M. Nawrot, Monika Gajecka, Paul B. Larsen, Iwona Szarejko
Software Mentions: 6
Published: over 5 years ago

10.1126/sciadv.abe8978

Astrocytes and neurons share region-specific transcriptional signatures that confer regional identity to neuronal reprogramming
Cited by: 56
Author(s): Álvaro Herrero-Navarro, Lorenzo Puche-Aroca, Verónica Moreno‐Juan, Alejandro Sempere-Ferràndez, Ana Espinosa, Rafael Susín, Laia Torres-Masjoan, Eduardo Leyva-Díaz, Marisa Karow, María Figueres-Oñate, Laura López‐Mascaraque, José P. López‐Atalaya, Benedikt Berninger, Guillermina López‐Bendito
Software Mentions: 6
Published: over 5 years ago

10.1186/s12974-021-02230-y

The role of interferon regulatory factor 8 for retinal tissue homeostasis and development of choroidal neovascularisation
Cited by: 9
Author(s): Peipei Zhang, Anja Schlecht, Julian Wolf, Stefaniya Boneva, Yannik Laich, Jana Koch, Franziska Ludwig, Myriam Boeck, Adrian Thien, Carmen Härdtner, Katrin Kierdorf, Hansjürgen Agostini, Günther Schlunck, Marco Prinz, Ingo Hilgendorf, Peter Wieghofer, Clemens Lange
Software Mentions: 6
Published: about 5 years ago

10.3389/fmolb.2021.619110

Screening and Identification of Key Common and Specific Genes and Their Prognostic Roles in Different Molecular Subtypes of Breast Cancer
Cited by: 7
Author(s): Na Sun, Peng Gao, Yanling Li, Zexuan Yan, Zaihui Peng, Yi Zhang, Fei Han, Xiaowei Qi
Software Mentions: 6
Published: over 5 years ago

10.1016/j.xpro.2020.100079

Using Chromatin Accessibility to Delineate Therapeutic Subtypes in Pancreatic Cancer Patient-Derived Cell Lines
Cited by: 4
Author(s): Holly Brunton, Ian Garner, Ulla-Maja Bailey, Rosanna Upstill-Goddard, Peter J. Bailey
Software Mentions: 6
Published: about 6 years ago

10.1523/JNEUROSCI.1675-19.2019

Midkine-a Is Required for Cell Cycle Progression of Müller Glia during Neuronal Regeneration in the Vertebrate Retina
Cited by: 28
Author(s): Mikiko Nagashima, Travis S. D’Cruz, Antoinette Eyram Danku, Doneen Hesse, Christopher J. Sifuentes, Pamela A. Raymond, Peter F. Hitchcock
Software Mentions: 6
Published: almost 7 years ago

10.3389/fmolb.2021.628546

Identification of Molecular Subtypes and Key Genes of Atherosclerosis Through Gene Expression Profiles
Cited by: 3
Author(s): Yujia Yang, Yuchen Cai, Yuan Zhang, Yuanfu Xu, Zhiqiang Xu
Software Mentions: 6
Published: over 5 years ago

10.3389/fgene.2021.625236

Identification of Prognostic Stromal-Immune Score–Based Genes in Hepatocellular Carcinoma Microenvironment
Cited by: 4
Author(s): Shanshan Liu, Guangchuang Yu, Li Liu, Xiaobao Zou, Lang Zhou, Erqiang Hu, Yang Song
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-81103-z

Cysteine: an overlooked energy and carbon source
Cited by: 19
Author(s): Luise Göbbels, Anja Poehlein, Albert Dumnitch, Richard Egelkamp, Cathrin Kröger, Johanna Haerdter, Thomas Hackl, Artur Feld, H. Weller, Rolf Daniel, Wolfgang R. Streit, Marie Charlotte Schoelmerich
Software Mentions: 6
Published: over 5 years ago

10.3389/fgene.2020.00311

Weighted Gene Coexpression Network Analysis of Features That Control Cancer Stem Cells Reveals Prognostic Biomarkers in Lung Adenocarcinoma
Cited by: 57
Author(s): Yi Liao, Yulei Wang, Mengqing Cheng, Chengliang Huang, Xiaoxuan Fan
Software Mentions: 6
Published: over 6 years ago

10.3389/fonc.2021.650534

High Level of METTL7B Indicates Poor Prognosis of Patients and Is Related to Immunity in Glioma
Cited by: 15
Author(s): Yujia Xiong, Mingxuan Li, Jiwei Bai, Yutao Sheng, Yazhou Zhang
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2021.665870

Prognostic and Predictive Value of Immune-Related Gene Pair Signature in Primary Lower-Grade Glioma Patients
Cited by: 2
Author(s): Kunjian Lei, Jingying Li, Zewei Tu, Feng Liu, Minhua Ye, Minxian Wu, Yue Zhu, Min Luo, Lin Li, Chuming Tao, Kai Huang, Xingen Zhu
Software Mentions: 6
Published: over 5 years ago

10.1155/2020/8974793

Comprehensive Analysis of Tumor-Infiltrating Immune Cells and Relevant Therapeutic Strategy in Esophageal Cancer
Cited by: 14
Author(s): Guangrong Lu, Liping Chen, Shengjie Wu, Yuao Feng, Tiesu Lin
Software Mentions: 6
Published: over 6 years ago

10.3389/fonc.2020.01496

Development and Validation of a Clinical Prognostic Model Based on Immune-Related Genes Expressed in Clear Cell Renal Cell Carcinoma
Cited by: 11
Author(s): Shengxiang Ren, Wei Wang, Hanyu Shen, Chenlin Zhang, Haiyan Hao, Mengjing Sun, Yingjing Wang, Xiaojing Zhang, Bing Lu, Chen Chen, Ziheng Wang
Software Mentions: 6
Published: about 6 years ago

10.1038/s41598-020-75688-0

Analysis of open chromatin regions in bladder cancer links β-catenin mutations and Wnt signaling with neuronal subtype of bladder cancer
Cited by: 3
Author(s): Aleyna Eray, Perihan Yağmur Güneri, Gülden Özden Yılmaz, Gökhan Karakülah, Serap Erkek
Software Mentions: 6
Published: almost 6 years ago

10.3390/ijms22116034

mTOR Driven Gene Transcription Is Required for Cholesterol Production in Neurons of the Developing Cerebral Cortex
Cited by: 9
Author(s): Martin Schüle, Tamer Butto, Sri Dewi, Laura Schlichtholz, Susanne Strand, Susanne Gerber, Kristina Endres, Susann Schweiger, Jennifer Winter
Software Mentions: 6
Published: over 5 years ago

10.3390/ijms21093384

A Data-Driven Review of the Genetic Factors of Pregnancy Complications
Cited by: 14
Author(s): Yury A. Barbitoff, Alexander Tsarev, Elena S. Vashukova, Evgeniia M Maksiutenko, Л. В. Коваленко, Л. Д. Белоцерковцева, Andrey S. Glotov
Software Mentions: 6
Published: over 6 years ago

10.3389/fonc.2021.617289

Derivation and Validation of a Prognostic Model for Cancer Dependency Genes Based on CRISPR-Cas9 in Gastric Adenocarcinoma
Cited by: 16
Author(s): Wenjie Zhou, Junqing Li, Xiufen Lu, Fangjie Liu, Tailai An, Xing Xiao, Zi Chong Kuo, Wenhui Wu, Yulong He
Software Mentions: 6
Published: over 5 years ago

10.1155/2020/2319194

Immune-Related lncRNA Correlated with Transcription Factors Provide Strong Prognostic Prediction in Gliomas
Cited by: 4
Author(s): Yantao Tian, Yiquan Ke, Yanxia Ma
Software Mentions: 6
Published: almost 6 years ago

10.3389/fonc.2021.732447

Comprehensive Molecular Analyses of a Six-Gene Signature for Predicting Late Recurrence of Hepatocellular Carcinoma
Cited by: 7
Author(s): Yuyuan Zhang, Xinwei Han, Xin Li, Long Liu, Libo Wang, Xinwei Han, Zhen Li
Software Mentions: 6
Published: about 5 years ago

10.3389/fonc.2021.631803

Prognostic and Predictive Value of m6A “Eraser” Related Gene Signature in Gastric Cancer
Cited by: 14
Author(s): Xin Xu, Enbo Zhou, Jun Zheng, Chihao Zhang, Yinghua Zou, Jiayun Lin, Jiwei Yu
Software Mentions: 6
Published: over 5 years ago

10.1186/s12967-020-02545-z

Development and validation of a robust immune-related prognostic signature in early-stage lung adenocarcinoma
Cited by: 13
Author(s): Pancheng Wu, Yi Zheng, Yanyu Wang, Yadong Wang, Ning Liang
Software Mentions: 6
Published: about 6 years ago

10.3389/fgene.2021.642608

Significance of Tumor Mutation Burden Combined With Immune Infiltrates in the Progression and Prognosis of Advanced Gastric Cancer
Cited by: 18
Author(s): Xiong Guo, Xiaolong Liang, Yujun Wang, Anqi Cheng, Han Zhang, Chuan Qin, Ziwei Wang
Software Mentions: 6
Published: over 5 years ago

10.1155/2020/8468303

Investigation of the Potential Mechanism Governing the Effect of the Shen Zhu San on COVID-19 by Network Pharmacology
Cited by: 5
Author(s): Yuxuan Wang, Yuhua Ru, Guowei Zhuo, Maozheng Sheng, Shuangqiu Wang, Jiarui Ma, Guowei Zhou, Xiaohe Sun, Yanqi Zeng, Ya Zhang, Hui Li, Zhigang Lu, Depei Wu, Minghua Wu
Software Mentions: 6
Published: almost 6 years ago

10.1155/2020/8841859

Establishment and Validation of a Prognostic Risk Model for Autophagy-Related Genes in Clear Cell Renal Cell Carcinoma
Cited by: 5
Author(s): Wenkai Han, Xiaoyan Xu, Kai Che, Guofeng Ma, Danxia Li, Mingxin Zhang, Wei Jiao, Haitao Niu
Software Mentions: 6
Published: almost 6 years ago

10.3389/fonc.2021.721644

CDT1 Is a Novel Prognostic and Predictive Biomarkers for Hepatocellular Carcinoma
Cited by: 14
Author(s): Chenhui Cai, Ying Zhang, Xu Hu, Wenhui Hu, Sizhen Yang, Hao Qiu, Tongwei Chu
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-020-72671-7

Molecular signatures of anthroponotic cutaneous leishmaniasis in the lesions of patients infected with Leishmania tropica
Cited by: 10
Author(s): Nasrin Masoudzadeh, Malin Östensson, Josefine Persson, Vahid Mashayekhi Goyonlo, Christopher Agbajogu, Yasaman Taslimi, Reza Erfanian Salim, Farnaz Zahedifard, Amir Mizbani, Housein Malekafzali Ardekani, Bronwyn M. Gunn, Sima Rafati, Ali M. Harandi
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0251354

Altering mammalian transcription networking with ADAADi: An inhibitor of ATP-dependent chromatin remodeling
Cited by: 3
Author(s): Ramalingam Radhakrishnan, Upasana Bedi Chanana, Saddam Hussain, Soni Sharma, Kaveri Goel, Deepa Bisht, Ketki Patne, Pynskhem Bok Swer, Joel W. Hockensmith, Rohini Muthuswami
Software Mentions: 6
Published: over 5 years ago

10.3389/fgene.2021.657658

Weighted Gene Co-expression Network Analysis Identified a Novel Thirteen-Gene Signature Associated With Progression, Prognosis, and Immune Microenvironment of Colon Adenocarcinoma Patients
Cited by: 2
Author(s): Cangang Zhang, Zhe Zhao, Haibo Li, Shukun Yao, Dongyan Zhao
Software Mentions: 6
Published: over 5 years ago

10.1002/cam4.3984

Signature based on metabolic‐related gene pairs can predict overall survival of osteosarcoma patients
Cited by: 8
Author(s): Long‐Qing Li, Liang‐Hao Zhang, Yongjie Yuan, Xin Lu, Yi Zhang, Yong‐Kui Liu, Wen Jiang, Manhas Abdul Khader, Tao Liu, Jiazhen Li, Yan Zhang
Software Mentions: 6
Published: over 5 years ago

10.18632/aging.203190

Immune infiltration and a ferroptosis-associated gene signature for predicting the prognosis of patients with endometrial cancer
Cited by: 32
Author(s): Wenwu Yin, Liao Fuchun, Mengjie Chen, Xiaoqing Qin, Hao Lai, Yuan Lin, Desheng Yao
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0180322

Affected pathways and transcriptional regulators in gene expression response to an ultra-marathon trail: Global and independent activity approaches
Cited by: 6
Author(s): María Maqueda, Emma Roca, Daniel Brotons, José Manuel Nieto Soria, Alexandre Perera
Software Mentions: 6
Published: about 9 years ago

10.1186/s12935-020-01249-0

Prognostic role of alternative splicing events in head and neck squamous cell carcinoma
Cited by: 3
Author(s): Yanni Ding, Guang Feng, Min Yang
Software Mentions: 6
Published: over 6 years ago

10.1093/gigascience/giz022

Digital expression explorer 2: a repository of uniformly processed RNA sequencing data
Cited by: 41
Author(s): Mark Ziemann, Antony Kaspi, Assam El‐Osta
Software Mentions: 6
Published: over 7 years ago

10.1093/gigascience/giaa117

Correcting for experiment-specific variability in expression compendia can remove underlying signals
Cited by: 16
Author(s): Alexandra Lee, YoSon Park, Georgia Doing, Deborah A. Hogan, Casey S. Greene
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0241848

Genome-wide identification of major genes and genomic prediction using high-density and text-mined gene-based SNP panels in Hanwoo (Korean cattle)
Cited by: 3
Author(s): Hyo Jun Lee, Young Jin Chung, Sungbong Jang, Dongil Seo, Hak Kyo Lee, Duhak Yoon, Dajeong Lim, Seung Hwan Lee
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0233372

Muscle transcriptome analysis identifies genes involved in ciliogenesis and the molecular cascade associated with intramuscular fat content in Large White heavy pigs
Cited by: 20
Author(s): Martina Zappaterra, Silvia Gioiosa, Giovanni Chillemi, Paolo Zambonelli, Roberta Davoli
Software Mentions: 6
Published: over 6 years ago

10.18632/aging.103923

Two machine learning methods identify a metastasis-related prognostic model that predicts overall survival in medulloblastoma patients
Cited by: 3
Author(s): Kui Chen, Bingqing Huang, Shan Yan, Siyi Xu, Keqin Li, Kuiming Zhang, Qi Wang, Zhongwei Zhuang, Liang Wei, Yanfei Zhang, Min Liu, Hao Lian, Chunlong Zhong
Software Mentions: 6
Published: almost 6 years ago

10.3390/genes12091339

Integrated Bioinformatics Analysis Reveals Marker Genes and Potential Therapeutic Targets for Pulmonary Arterial Hypertension
Cited by: 8
Author(s): Aoqi Li, Jin He, Zhe Zhang, Shuhui Jiang, Yun Gao, Yuchun Pan, Huanan Wang, Lenan Zhuang
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0254368

Identification and validation of a novel ferroptosis-related gene model for predicting the prognosis of gastric cancer patients
Cited by: 6
Author(s): Gang Liu, Jianying Ma, Gang Hu, Huan Jin
Software Mentions: 6
Published: over 5 years ago

10.3390/genes12040491

Dissection of the Genetic Association between Anorexia Nervosa and Obsessive–Compulsive Disorder at the Network and Cellular Levels
Cited by: 4
Author(s): Weichen Song, Weidi Wang, Shunying Yu, Guan Ning Lin
Software Mentions: 6
Published: over 5 years ago

10.1186/s12935-021-02049-w

Multi-omics analysis reveals prognostic value of tumor mutation burden in hepatocellular carcinoma
Cited by: 19
Author(s): Qianhui Xu, Hao Xu, Ruilong Deng, Zijie Wang, Nanjun Li, Zhixuan Qi, Jiaxin Zhao, Wen Huang
Software Mentions: 6
Published: over 5 years ago

10.1186/s12864-019-6076-4

Transcriptome analysis of the effect of C-C chemokine receptor 5 deficiency on cell response to Toxoplasma gondii in brain cells
Cited by: 7
Author(s): Kaoru Kobayashi, Kousuke Umeda, Fumie Ihara, Sadao Tanaka, Junya Yamagishi, Yutaka Suzuki, Yoshifumi Nishikawa
Software Mentions: 6
Published: about 7 years ago

10.3389/fgene.2019.00025

LncRNAs GIHCG and SPINT1-AS1 Are Crucial Factors for Pan-Cancer Cells Sensitivity to Lapatinib
Cited by: 20
Author(s): Zhen Xiang, Shuzheng Song, Zhenggang Zhu, Wenhong Sun, Jaron E. Gifts, Sam Q. Sun, Qiushi Shauna Li, Yingyan Yu, Keqin Kathy Li
Software Mentions: 6
Published: over 7 years ago

10.1155/2021/6693219

A Novel 8-Gene Prognostic Signature for Survival Prediction of Uveal Melanoma
Cited by: 3
Author(s): Zhongjun Tang, Kebo Cai
Software Mentions: 6
Published: about 5 years ago

10.1172/jci.insight.149185

Th1 polarization defines the synovial fluid T cell compartment in oligoarticular juvenile idiopathic arthritis
Cited by: 16
Author(s): Amélie M. Julé, Kacie J. Hoyt, Kevin Wei, María Gutiérrez‐Arcelus, Maria Taylor, Julie Ng, James A. Lederer, Siobhan Case, Margaret H. Chang, Ezra Cohen, Fatma Dedeoğlu, Melissa Hazen, Jonathan S Hausmann, Olha Halyabar, Erin Janssen, Jeffrey Lo, Mindy S. Lo, Esra Meidan, Jay Roberts, Mary Beth Son, Robert P. Sundel, Pui Y. Lee, Talal Chatila, Peter A. Nigrović, Lauren A. Henderson
Software Mentions: 6
Published: about 5 years ago

10.3389/fcell.2021.724860

Integrative Analysis of Biomarkers Through Machine Learning Identifies Stemness Features in Colorectal Cancer
Cited by: 7
Author(s): Ran Wei, Jichuan Quan, Shuofeng Li, Hengchang Liu, Xu Guan, Zheng Jiang, Xishan Wang
Software Mentions: 6
Published: about 5 years ago

Projects: bioconductor: clusterProfiler

Science Score: 75/100

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Papers Mentioning clusterProfiler 2,223