bioconductor: clusterProfiler | Projects

10.1186/s12935-021-02212-3

Midkine promotes glioblastoma progression via PI3K-Akt signaling
Cited by: 14
Author(s): Beiquan Hu, Chao Qin, Li Li, Lei Wei, Xianlun Mo, Huasheng Fan, Yuanhua Lei, Feng Wang, Donghua Zou
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0242191

EZH2 is a negative prognostic biomarker associated with immunosuppression in hepatocellular carcinoma
Cited by: 20
Author(s): Baoqiang Guo, Xiaohong Tan, Hong Cen
Software Mentions: 7
Published: almost 6 years ago

10.3389/fendo.2021.712513

Construction of a Prognostic Risk Prediction Model for Obesity Combined With Breast Cancer
Cited by: 1
Author(s): Na Sun, Dandan Ma, Peng Gao, Yanling Li, Zexuan Yan, Zaihui Peng, Fei Han, Yi Zhang, Xiaowei Qi
Software Mentions: 7
Published: about 5 years ago

10.3389/fncel.2020.612560

Proteomic Characterization of Human Neural Stem Cells and Their Secretome During in vitro Differentiation
Cited by: 19
Author(s): Jakub Červenka, Jiřina Tylečková, Helena Kupcová Skalníková, Kateřina Vodičková Kepková, Ievgeniia Poliakh, Ivona Valeková, Lucie Pfeiferová, Michal Kolář, Michaela Vaškovičová, Tereza Pánková, Petr Vodička
Software Mentions: 7
Published: over 5 years ago

10.3389/fonc.2020.596318

Single-Cell RNA-Seq Analysis Reveals Microenvironmental Infiltration of Plasma Cells and Hepatocytic Prognostic Markers in HCC With Cirrhosis
Cited by: 40
Author(s): Siwen Zhang, Zhenhao Liu, Dan Wu, Lanming Chen, Lu Xie
Software Mentions: 7
Published: almost 6 years ago

10.3389/fonc.2020.580263

A Prognostic Microenvironment-Related Immune Signature via ESTIMATE (PROMISE Model) Predicts Overall Survival of Patients With Glioma
Cited by: 23
Author(s): Huaide Qiu, Yongqiang Li, Shupeng Cheng, Jiahui Li, Chuan He, Jianan Li
Software Mentions: 7
Published: almost 6 years ago

10.18632/aging.101912

The widespread increase in inter-individual variability of gene expression in the human brain with age
Cited by: 19
Author(s): Veronika R. Kedlian, Handan Melike Dönertaş, Janet M. Thornton
Software Mentions: 7
Published: over 7 years ago

10.1038/s41420-021-00451-x

A novel defined pyroptosis-related gene signature for predicting the prognosis of ovarian cancer
Cited by: 256
Author(s): Ying Yang, Qinjin Dai, Hongbo Qi
Software Mentions: 7
Published: over 5 years ago

10.3390/v13061059

Comparative Analysis of Public RNA-Sequencing Data from Human Intestinal Enteroid (HIEs) Infected with Enteric RNA Viruses Identifies Universal and Virus-Specific Epithelial Responses
Cited by: 5
Author(s): Roberto J. Cieza, Jonathan L. Golob, Justin A. Colacino, Christiane E. Wobus
Software Mentions: 7
Published: over 5 years ago

10.3389/fgene.2020.612037

An Immune Gene-Related Five-lncRNA Signature for to Predict Glioma Prognosis
Cited by: 20
Author(s): Xinzhuang Wang, Ming Gao, Junyi Ye, Qiuyi Jiang, Quan Yang, Cheng Zhang, Shengtao Wang, Jian Zhang, Ligang Wang, Jianing Wu, Hua Zhan, Xu Hou, Dayong Han, Shen Zhao
Software Mentions: 7
Published: almost 6 years ago

10.3389/fcell.2021.624053

“All-In-One” Genetic Tool Assessing Endometrial Receptivity for Personalized Screening of Female Sex Steroid Hormones
Cited by: 7
Author(s): Pavel Deryabin, А. П. Домнина, Inga V. Gorelova, M. V. Rulev, М. А. Petrosyan, Nikolay Nikolsky, Aleksandra Borodkina
Software Mentions: 7
Published: over 5 years ago

10.3389/fcell.2021.637400

Integrated Bioinformatical Analysis Identifies GIMAP4 as an Immune-Related Prognostic Biomarker Associated With Remodeling in Cervical Cancer Tumor Microenvironment
Cited by: 16
Author(s): Fangfang Xu, Jiacheng Shen, Shaohua Xu
Software Mentions: 7
Published: almost 6 years ago

10.3389/fcell.2021.648279

Prognostic Value of a Novel Signature With Nine Hepatitis C Virus-Induced Genes in Hepatic Cancer by Mining GEO and TCGA Databases
Cited by: 5
Author(s): Jianming Wei, Bo Wang, Xibo Gao, Daqing Sun
Software Mentions: 7
Published: over 5 years ago

10.7554/eLife.61138

The biphasic and age-dependent impact of klotho on hallmarks of aging and skeletal muscle function
Cited by: 15
Author(s): Zachary Clemens, Sruthi Sivakumar, Abish Pius, Amrita Sahu, Sunita Shinde, Hikaru Mamiya, Nathaniel Luketich, Jian Cui, Purushottam D. Dixit, Joerg D. Hoeck, Sebastian Kreuz, Michael Franti, Aaron Barchowsky, Fabrisia Ambrosio
Software Mentions: 7
Published: over 5 years ago

10.18632/aging.103949

Analysis of DNA methylation-driven genes for predicting the prognosis of patients with colorectal cancer
Cited by: 3
Author(s): Boshi Fu, Du Cheng, Zhuona Wu, Mingwei Li, Yi Zhao, Xinli Liu, Huizhe Wu, Minjie Wei
Software Mentions: 7
Published: almost 6 years ago

10.3389/fonc.2021.618187

CCR4, CCR8, and P2RY14 as Prognostic Factors in Head and Neck Squamous Cell Carcinoma Are Involved in the Remodeling of the Tumor Microenvironment
Cited by: 9
Author(s): Liangliang Meng, Xiaoxi He, Hong Qin, Bo Qiao, Xiao Zhang, Bin Wu, Xiaobo Zhang, Yingtian Wei, Jing Li, Zhaoxiang Ye, Yueyong Xiao
Software Mentions: 7
Published: over 5 years ago

10.3389/fonc.2020.614487

Distinguishable Prognostic miRNA Signatures of Head and Neck Squamous Cell Cancer With or Without HPV Infection
Cited by: 10
Author(s): Xinmei Luo, Min Zheng, Mingxin Cao, Weilong Zhang, Mengyuan Huang, Li Dai, Yaling Tang, Xin‐hua Liang
Software Mentions: 7
Published: over 5 years ago

10.1186/s12894-021-00795-7

Comprehensive analysis of tumour mutational burden and its clinical significance in prostate cancer
Cited by: 14
Author(s): Limin Wang, Shucheng Pan, Binbin Zhu, Zhenliang Yu, Wei Wang
Software Mentions: 7
Published: over 5 years ago

10.1186/1756-0500-5-360

LXtoo: an integrated live Linux distribution for the bioinformatics community
Cited by: 5
Author(s): Guangchuang Yu, Li-Gen Wang, Xiaohong Meng, Qing-Yu He
Software Mentions: 7
Published: over 14 years ago

10.1371/journal.pone.0251354

Altering mammalian transcription networking with ADAADi: An inhibitor of ATP-dependent chromatin remodeling
Cited by: 3
Author(s): Ramalingam Radhakrishnan, Upasana Bedi Chanana, Saddam Hussain, Soni Sharma, Kaveri Goel, Deepa Bisht, Ketki Patne, Pynskhem Bok Swer, Joel W. Hockensmith, Rohini Muthuswami
Software Mentions: 6
Published: over 5 years ago

10.3390/nu12041042

Green Tea Polyphenol EGCG Attenuates MDSCs-mediated Immunosuppression through Canonical and Non-Canonical Pathways in a 4T1 Murine Breast Cancer Model
Cited by: 33
Author(s): Ping Xu, Feng Yan, Yuhai Zhao, Xiangbo Chen, Shili Sun, Yuefei Wang, Le Ying
Software Mentions: 6
Published: over 6 years ago

10.1002/cam4.3984

Signature based on metabolic‐related gene pairs can predict overall survival of osteosarcoma patients
Cited by: 8
Author(s): Long‐Qing Li, Liang‐Hao Zhang, Yongjie Yuan, Xin Lu, Yi Zhang, Yong‐Kui Liu, Wen Jiang, Manhas Abdul Khader, Tao Liu, Jiazhen Li, Yan Zhang
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2021.684242

Integrated Analysis of a Competing Endogenous RNA Network Reveals a Prognostic lncRNA Signature in Bladder Cancer
Cited by: 2
Author(s): Mou Peng, Cheng Xu, Xiong Wang, Yi Lee, Yinhuai Wang
Software Mentions: 6
Published: about 5 years ago

10.18632/aging.203190

Immune infiltration and a ferroptosis-associated gene signature for predicting the prognosis of patients with endometrial cancer
Cited by: 32
Author(s): Wenwu Yin, Liao Fuchun, Mengjie Chen, Xiaoqing Qin, Hao Lai, Yuan Lin, Desheng Yao
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2020.626555

Development and Validation of an Immune-Related Gene-Pair Model of High-Grade Serous Ovarian Cancer After Platinum-Based Chemotherapy
Cited by: 0
Author(s): Jiaxing Lin, Xiao Xu, Dan Sun, Tianren Li
Software Mentions: 6
Published: over 5 years ago

10.1155/2021/5545261

Ndufs1 Deficiency Aggravates the Mitochondrial Membrane Potential Dysfunction in Pressure Overload-Induced Myocardial Hypertrophy
Cited by: 17
Author(s): Rongjun Zou, Jun Tao, Junxiong Qiu, Wu Shi, Ming‐Hui Zou, Weidan Chen, Wenlei Li, Na Zhou, Shaoli Wang, Li Ma, Xinxin Chen
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2020.00424

BTK Has Potential to Be a Prognostic Factor for Lung Adenocarcinoma and an Indicator for Tumor Microenvironment Remodeling: A Study Based on TCGA Data Mining
Cited by: 82
Author(s): Kewei Bi, Xin Wei, Xiaoxue Qin, Bo Li
Software Mentions: 6
Published: over 6 years ago

10.1186/s12920-021-00989-w

Identification of key genes in calcific aortic valve disease via weighted gene co-expression network analysis
Cited by: 7
Author(s): Jin-Yu Sun, Hua Yang, Hui Shen, Qiang Qu, Junyan Kan, Xiangqing Kong, Wei Sun, Yue-Yun Shen
Software Mentions: 6
Published: over 5 years ago

10.3389/fcell.2021.717601

Tumor Immune Microenvironment Landscape in Glioma Identifies a Prognostic and Immunotherapeutic Signature
Cited by: 5
Author(s): Chunyu Zhang, Lirui Guo, Zhongzhou Su, Na Luo, Yinqiu Tan, Pengfei Xu, Liguo Ye, Shiao Tong, Haitao Liu, Xiaobin Li, Qianxue Chen, Daofeng Tian
Software Mentions: 6
Published: about 5 years ago

10.1155/2021/5552623

Integrative Functional Genomic Analysis of Molecular Signatures and Mechanistic Pathways in the Cell Cycle Underlying Alzheimer’s Disease
Cited by: 5
Author(s): Zhike Zhou, Jun Bai, Shanshan Zhong, Rongwei Zhang, Kexin Kang, Xiaoqian Zhang, Ying Xu, Chuansheng Zhao, Mei Zhao
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0180322

Affected pathways and transcriptional regulators in gene expression response to an ultra-marathon trail: Global and independent activity approaches
Cited by: 6
Author(s): María Maqueda, Emma Roca, Daniel Brotons, José Manuel Nieto Soria, Alexandre Perera
Software Mentions: 6
Published: about 9 years ago

10.1186/s12967-020-02689-y

Three hematologic/immune system-specific expressed genes are considered as the potential biomarkers for the diagnosis of early rheumatoid arthritis through bioinformatics analysis
Cited by: 60
Author(s): Qi Cheng, Xin Chen, Huaxiang Wu, Yan Du
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12935-020-01249-0

Prognostic role of alternative splicing events in head and neck squamous cell carcinoma
Cited by: 3
Author(s): Yanni Ding, Guang Feng, Min Yang
Software Mentions: 6
Published: over 6 years ago

10.3389/fonc.2021.665870

Prognostic and Predictive Value of Immune-Related Gene Pair Signature in Primary Lower-Grade Glioma Patients
Cited by: 2
Author(s): Kunjian Lei, Jingying Li, Zewei Tu, Feng Liu, Minhua Ye, Minxian Wu, Yue Zhu, Min Luo, Lin Li, Chuming Tao, Kai Huang, Xingen Zhu
Software Mentions: 6
Published: over 5 years ago

10.7554/eLife.61405

Cohesin mutations are synthetic lethal with stimulation of WNT signaling
Cited by: 17
Author(s): Chue Vin Chin, Jisha Antony, Sarada Ketharnathan, Anastasia Labudina, Grégory Gimenez, Kate M Parsons, Jin-Shu He, Amee J. George, Maria Michela Pallotta, Antonio Musio, Antony W. Braithwaite, Parry Guilford, Ross D. Hannan, Julia A. Horsfield
Software Mentions: 6
Published: almost 6 years ago

10.3389/fonc.2021.650534

High Level of METTL7B Indicates Poor Prognosis of Patients and Is Related to Immunity in Glioma
Cited by: 15
Author(s): Yujia Xiong, Mingxuan Li, Jiwei Bai, Yutao Sheng, Yazhou Zhang
Software Mentions: 6
Published: over 5 years ago

10.3389/fcvm.2020.580573

Comprehensive Identification of Key Genes Involved in Development of Diabetes Mellitus-Related Atherogenesis Using Weighted Gene Correlation Network Analysis
Cited by: 14
Author(s): Qi Huang, Guo-Xiong Deng, Rongguo Wei, Qiaoye Wang, Donghua Zou, Jinru Wei
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pone.0241848

Genome-wide identification of major genes and genomic prediction using high-density and text-mined gene-based SNP panels in Hanwoo (Korean cattle)
Cited by: 3
Author(s): Hyo Jun Lee, Young Jin Chung, Sungbong Jang, Dongil Seo, Hak Kyo Lee, Duhak Yoon, Dajeong Lim, Seung Hwan Lee
Software Mentions: 6
Published: almost 6 years ago

10.1136/jitc-2021-002856

IL-6 contributes to metastatic switch via the differentiation of monocytic-dendritic progenitors into prometastatic immune cells
Cited by: 15
Author(s): Ksenia Magidey-Klein, Tim J. Cooper, Ksenya Kveler, Rachelly Normand, Tongwu Zhang, Michael Timaner, Ziv Raviv, Brian P. James, Roi Gazit, Ze’ev Ronai, Shai S. Shen-Orr, Yuval Shaked
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0233372

Muscle transcriptome analysis identifies genes involved in ciliogenesis and the molecular cascade associated with intramuscular fat content in Large White heavy pigs
Cited by: 20
Author(s): Martina Zappaterra, Silvia Gioiosa, Giovanni Chillemi, Paolo Zambonelli, Roberta Davoli
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0254368

Identification and validation of a novel ferroptosis-related gene model for predicting the prognosis of gastric cancer patients
Cited by: 6
Author(s): Gang Liu, Jianying Ma, Gang Hu, Huan Jin
Software Mentions: 6
Published: over 5 years ago

10.1186/s13045-018-0679-0

Whole-exon sequencing of human myeloma cell lines shows mutations related to myeloma patients at relapse with major hits in the DNA regulation and repair pathways
Cited by: 31
Author(s): Benoît Tessoulin, Agnès Moreau-Aubry, Géraldine Descamps, Patricia Gomez‐Bougie, Sophie Maïga, Alban Gaignard, David Chiron, Emmanuelle Ménoret, Steven Le Gouill, Philippe Moreau, Martine Amiot, Catherine Pellat‐Deceunynck
Software Mentions: 6
Published: almost 8 years ago

10.1186/s12935-021-02049-w

Multi-omics analysis reveals prognostic value of tumor mutation burden in hepatocellular carcinoma
Cited by: 19
Author(s): Qianhui Xu, Hao Xu, Ruilong Deng, Zijie Wang, Nanjun Li, Zhixuan Qi, Jiaxin Zhao, Wen Huang
Software Mentions: 6
Published: over 5 years ago

10.1186/s12864-019-6076-4

Transcriptome analysis of the effect of C-C chemokine receptor 5 deficiency on cell response to Toxoplasma gondii in brain cells
Cited by: 7
Author(s): Kaoru Kobayashi, Kousuke Umeda, Fumie Ihara, Sadao Tanaka, Junya Yamagishi, Yutaka Suzuki, Yoshifumi Nishikawa
Software Mentions: 6
Published: about 7 years ago

10.3389/fonc.2020.01496

Development and Validation of a Clinical Prognostic Model Based on Immune-Related Genes Expressed in Clear Cell Renal Cell Carcinoma
Cited by: 11
Author(s): Shengxiang Ren, Wei Wang, Hanyu Shen, Chenlin Zhang, Haiyan Hao, Mengjing Sun, Yingjing Wang, Xiaojing Zhang, Bing Lu, Chen Chen, Ziheng Wang
Software Mentions: 6
Published: about 6 years ago

10.7150/ijms.49126

Construction and validation of a three-microRNA signature as prognostic biomarker in patients with hepatocellular carcinoma
Cited by: 9
Author(s): Xi Zhang, Li Ma, Li Zhai, Dong Chen, Yong Li, Zhongjun Shang, Zongmei Zhang, Yu Gao, Wei Yang, Yixun Li, Yu‐Qing Pan
Software Mentions: 6
Published: almost 6 years ago

10.1155/2021/6693219

A Novel 8-Gene Prognostic Signature for Survival Prediction of Uveal Melanoma
Cited by: 3
Author(s): Zhongjun Tang, Kebo Cai
Software Mentions: 6
Published: about 5 years ago

10.7150/ijms.46456

Lipid Metabolism is the common pathologic mechanism between Type 2 Diabetes Mellitus and Parkinson's disease
Cited by: 6
Author(s): Xi Zhang, Yu Fan, Yuan Luo, Lingjing Jin, Siguang Li
Software Mentions: 6
Published: almost 7 years ago

10.1007/s00109-020-01908-9

Immune landscape and a novel immunotherapy-related gene signature associated with clinical outcome in early-stage lung adenocarcinoma
Cited by: 17
Author(s): Xuanwen Bao, Run Shi, Tianyu Zhao, Yanfang Wang
Software Mentions: 6
Published: over 6 years ago

10.1186/s13046-020-01739-z

LncRNA MYLK-AS1 facilitates tumor progression and angiogenesis by targeting miR-424-5p/E2F7 axis and activating VEGFR-2 signaling pathway in hepatocellular carcinoma
Cited by: 72
Author(s): Fei Teng, Juxiang Zhang, Qimeng Chang, Xubo Wu, Wei‐Guo Tang, Jianfa Wang, Jin-Feng Feng, Ziping Zhang, Zhiqiu Hu
Software Mentions: 6
Published: almost 6 years ago

10.3389/fonc.2021.732447

Comprehensive Molecular Analyses of a Six-Gene Signature for Predicting Late Recurrence of Hepatocellular Carcinoma
Cited by: 7
Author(s): Yuyuan Zhang, Xinwei Han, Xin Li, Long Liu, Libo Wang, Xinwei Han, Zhen Li
Software Mentions: 6
Published: about 5 years ago

10.1186/s13046-021-02015-4

LncRNA CARMN overexpression promotes prognosis and chemosensitivity of triple negative breast cancer via acting as miR143-3p host gene and inhibiting DNA replication
Cited by: 15
Author(s): Xiaonan Sheng, Huijuan Dai, Yueyao Du, Jing Peng, Rui Sha, Fan Yang, Liheng Zhou, Yingsong Lin, Shuguang Xu, Yifan Wu, Weiqiang Yin, Jinsong Lu
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2021.631803

Prognostic and Predictive Value of m6A “Eraser” Related Gene Signature in Gastric Cancer
Cited by: 14
Author(s): Xin Xu, Enbo Zhou, Jun Zheng, Chihao Zhang, Yinghua Zou, Jiayun Lin, Jiwei Yu
Software Mentions: 6
Published: over 5 years ago

10.1155/2020/8468303

Investigation of the Potential Mechanism Governing the Effect of the Shen Zhu San on COVID-19 by Network Pharmacology
Cited by: 5
Author(s): Yuxuan Wang, Yuhua Ru, Guowei Zhuo, Maozheng Sheng, Shuangqiu Wang, Jiarui Ma, Guowei Zhou, Xiaohe Sun, Yanqi Zeng, Ya Zhang, Hui Li, Zhigang Lu, Depei Wu, Minghua Wu
Software Mentions: 6
Published: almost 6 years ago

10.3389/fonc.2021.617289

Derivation and Validation of a Prognostic Model for Cancer Dependency Genes Based on CRISPR-Cas9 in Gastric Adenocarcinoma
Cited by: 16
Author(s): Wenjie Zhou, Junqing Li, Xiufen Lu, Fangjie Liu, Tailai An, Xing Xiao, Zi Chong Kuo, Wenhui Wu, Yulong He
Software Mentions: 6
Published: over 5 years ago

10.20892/j.issn.2095-3941.2020.0073

Single-cell RNA-seq reveals the immune escape and drug resistance mechanisms of mantle cell lymphoma
Cited by: 23
Author(s): Liang Wang, Steven Mo, Xin Li, Yuanyuan He, Jing Yang
Software Mentions: 6
Published: almost 7 years ago

10.1101/2021.02.23.432450

The proximal proteome of 17 SARS-CoV-2 proteins links to disrupted antiviral signaling and host translation
Cited by: 4
Author(s): Jordan M. Meyers, Muthukumar Ramanathan, Ronald L. Shanderson, Laura K. Donohue, Ian Ferguson, Margaret Guo, Deepti Rao, Weili Miao, David L. Reynolds, Xue Yang, Yang Zhao, Yen-Yu Yang, Yinsheng Wang, Paul A. Khavari
Software Mentions: 6
Published: over 5 years ago

10.1128/mSystems.00163-21

Oral Epithelial Cells Distinguish between <i>Candida</i> Species with High or Low Pathogenic Potential through MicroRNA Regulation
Cited by: 5
Author(s): Márton Horváth, Gábor Nagy, Nóra Zsindely, László Bodai, Péter Horváth, Csaba Vágvölgyi, Joshua D. Nosanchuk, Renáta Tóth, Attila Gácser
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2021.721644

CDT1 Is a Novel Prognostic and Predictive Biomarkers for Hepatocellular Carcinoma
Cited by: 14
Author(s): Chenhui Cai, Ying Zhang, Xu Hu, Wenhui Hu, Sizhen Yang, Hao Qiu, Tongwei Chu
Software Mentions: 6
Published: about 5 years ago

10.18632/aging.102714

ISG20 serves as a potential biomarker and drives tumor progression in clear cell renal cell carcinoma
Cited by: 22
Author(s): Tianbo Xu, Hailong Ruan, Su Gao, Jingchong Liu, Yuenan Liu, Zhengshuai Song, Qi Cao, Keshan Wang, Lin Bao, Di Liu, Junwei Tong, Jian Shi, Huageng Liang, Hongmei Yang, Ke Chen, Xiaoping Zhang
Software Mentions: 6
Published: over 6 years ago

10.7150/ijbs.61441

Multi-omics Analysis of Ferroptosis Regulation Patterns and Characterization of Tumor Microenvironment in Patients with Oral Squamous Cell Carcinoma
Cited by: 17
Author(s): Wenchao Gu, Mai Kim, Lei Wang, Zongcheng Yang, Takahito Nakajima, Yoshito Tsushima
Software Mentions: 6
Published: almost 6 years ago

10.1155/2020/5786053

Integrating Network Pharmacology with Molecular Docking to Unravel the Active Compounds and Potential Mechanism of Simiao Pill Treating Rheumatoid Arthritis
Cited by: 16
Author(s): Mengshi Tang, Xiaoqing Xie, Pan Yi, Jin Seok Kang, Jiafen Liao, Wenqun Li, Fen Li
Software Mentions: 6
Published: almost 6 years ago

10.7150/thno.56141

Distinct placental molecular processes associated with early-onset and late-onset preeclampsia
Cited by: 31
Author(s): Zhonglu Ren, Yunfei Gao, Yue Gao, Guanmei Liang, Qian Chen, Sijia Jiang, Xiaoxue Yang, Cui-Xia Fan, Haizhen Wang, Jing Wang, Yi‐Wu Shi, Chaoqun Xiao, Ming Zhong, Xinping Yang
Software Mentions: 6
Published: almost 6 years ago

10.3389/fnins.2019.00392

Data-Driven Analysis of Age, Sex, and Tissue Effects on Gene Expression Variability in Alzheimer's Disease
Cited by: 19
Author(s): Lavida R. K. Brooks, George I. Mias
Software Mentions: 6
Published: over 7 years ago

10.3389/fonc.2021.592211

An Immune-Related Gene Pairs Signature Predicts Prognosis and Immune Heterogeneity in Glioblastoma
Cited by: 1
Author(s): Nijia Zhang, Ming Ge, Tao Jiang, Xiaoxia Peng, Hailang Sun, Qi Xiang, Zhewei Zou, Dapeng Li
Software Mentions: 6
Published: over 5 years ago

10.1038/s41392-021-00745-7

Melatonin enhances radiofrequency-induced NK antitumor immunity, causing cancer metabolism reprogramming and inhibition of multiple pulmonary tumor development
Cited by: 19
Author(s): Ming Li, Bingjie Hao, Menghuan Zhang, Russel J. Reíter, Shumeng Lin, Tiansheng Zheng, Xiangyun Chen, Yanru Ren, Liduo Yue, Аbay Baigenzhin, Guojie Chen, Xiao Xu, Yufeng Shi, Lihong Fan
Software Mentions: 6
Published: about 5 years ago

10.1186/s12864-016-2483-y

Influenza H3N2 infection of the collaborative cross founder strains reveals highly divergent host responses and identifies a unique phenotype in CAST/EiJ mice
Cited by: 43
Author(s): Sarah R. Leist, Carolin Pilzner, Judith M. A. van den Brand, Leonie Dengler, Robert Geffers, Thijs Kuiken, Rudi Balling, Heike Kollmus, Klaus Schughart
Software Mentions: 6
Published: over 10 years ago

10.1038/s41598-021-98059-9

Sex-dependent gene co-expression in the human body
Cited by: 9
Author(s): Robin Hartman, Michal Mokrý, Gérard Pasterkamp, Hester M. den Ruijter
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pgen.1008749

Genome-wide DNA methylation and gene expression patterns reflect genetic ancestry and environmental differences across the Indonesian archipelago
Cited by: 29
Author(s): Heini M. Natri, Katalina Bobowik, Pradiptajati Kusuma, Chelzie Crenna Darusallam, Guy S. Jacobs, Georgi Hudjashov, J. Stephen Lansing, Herawati Sudoyo, Nicholas E. Banovich, Murray P. Cox, Irene Gallego Romero
Software Mentions: 6
Published: over 6 years ago

10.3389/fonc.2020.01001

Network-Based Approach to Identify the Antiproliferative Mechanisms of Bruceine D in Breast Cancer From the Cancer Genome Atlas
Cited by: 3
Author(s): Sai Tian, Rui Jiang, Weidong Zhang
Software Mentions: 6
Published: over 6 years ago

10.1038/s41392-020-00263-y

Adaptive immune responses to SARS-CoV-2 infection in severe versus mild individuals
Cited by: 127
Author(s): Fan Zhang, Rui Gan, Ziqi Zhen, Xiaoli Hu, Xiang Li, Fengxia Zhou, Ying Liu, Chuangeng Chen, Shuangyu Xie, Bailing Zhang, Xiaoke Wu, Zhiwei Huang
Software Mentions: 6
Published: about 6 years ago

10.1155/2020/8974793

Comprehensive Analysis of Tumor-Infiltrating Immune Cells and Relevant Therapeutic Strategy in Esophageal Cancer
Cited by: 14
Author(s): Guangrong Lu, Liping Chen, Shengjie Wu, Yuao Feng, Tiesu Lin
Software Mentions: 6
Published: over 6 years ago

10.3389/fmolb.2021.619110

Screening and Identification of Key Common and Specific Genes and Their Prognostic Roles in Different Molecular Subtypes of Breast Cancer
Cited by: 7
Author(s): Na Sun, Peng Gao, Yanling Li, Zexuan Yan, Zaihui Peng, Yi Zhang, Fei Han, Xiaowei Qi
Software Mentions: 6
Published: over 5 years ago

10.18632/aging.203260

Screening and identification of angiogenesis-related genes as potential novel prognostic biomarkers of hepatocellular carcinoma through bioinformatics analysis
Cited by: 6
Author(s): Zili Zhen, Zan Shen, Yanmei Hu, Peilong Sun
Software Mentions: 6
Published: over 5 years ago

10.1155/2020/8841859

Establishment and Validation of a Prognostic Risk Model for Autophagy-Related Genes in Clear Cell Renal Cell Carcinoma
Cited by: 5
Author(s): Wenkai Han, Xiaoyan Xu, Kai Che, Guofeng Ma, Danxia Li, Mingxin Zhang, Wei Jiao, Haitao Niu
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12864-018-5266-9

Host microRNA analysis in cyprinid Herpesvirus-3 (CyHV-3) infected common carp
Cited by: 10
Author(s): M. Reichert, Anna Łukasik, Piotr Zielenkiewicz, Marek Matras, Joanna Maj‐Paluch, Magdalena Stachnik, Ewa Borzym
Software Mentions: 6
Published: almost 8 years ago

10.3389/fmolb.2021.628546

Identification of Molecular Subtypes and Key Genes of Atherosclerosis Through Gene Expression Profiles
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Author(s): Yujia Yang, Yuchen Cai, Yuan Zhang, Yuanfu Xu, Zhiqiang Xu
Software Mentions: 6
Published: over 5 years ago

10.1042/BSR20204037

Identification of survival-related alternative splicing signatures in acute myeloid leukemia
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Author(s): Biyu Zhang, Lei Yang, Xin Wang, Denggang Fu
Software Mentions: 6
Published: over 5 years ago

10.1155/2020/8833438

Systematic Investigation of mRNA N6-Methyladenosine Machinery in Primary Prostate Cancer
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Author(s): Mei Jiang, Yu‐Chuan Lu, Dongxia Duan, Hongxiang Wang, Gaoya Man, Ching Kang, Kesaier Abulimiti, Yao Li
Software Mentions: 6
Published: almost 6 years ago

10.1155/2021/6680883

MXRA5 Is a Novel Immune-Related Biomarker That Predicts Poor Prognosis in Glioma
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Author(s): Jinzhang Sun, Jinhao Zhang, Jia-Bo Li, Feng Yuan, Luqing Tong, Xu-Ya Wang, Lulu Chen, Xiaoguang Fan, Yiming Zhang, Xiao Ren, Chen Zhang, Shukun Yu, Xuejun Yang
Software Mentions: 6
Published: over 5 years ago

10.1111/jcmm.16414

Identification of hub genes associated with neutrophils infiltration in colorectal cancer
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Author(s): Hao Su, Tianyi Cai, Sen Zhang, Xialin Yan, Leqi Zhou, Zengyou He, Peng Xue, Jianwen Li, Min Zheng, Xiao Yang, Bo Feng
Software Mentions: 6
Published: over 5 years ago

10.18632/aging.203448

Effects of Siberian fir terpenes extract Abisil on antioxidant activity, autophagy, transcriptome and proteome of human fibroblasts
Cited by: 1
Author(s): Anastasiya V. Lipatova, George S. Krasnov, Pavel Vorobyov, Pavel Melnikov, Olga N. Alekseeva, Yulia S. Vershinina, Alexander G. Brzhozovskiy, Daria Goliusova, Faniya Maganova, Natalia F. Zakirova, Anna V. Kudryavtseva, Alexey Moskalev
Software Mentions: 6
Published: about 5 years ago

10.1111/jcmm.14651

Identification of prognosis‐related alternative splicing events in kidney renal clear cell carcinoma
Cited by: 13
Author(s): Yongdi Zuo, Liang Zhang, Weihao Tang, Wanxin Tang
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pcbi.1006940

CNEr: A toolkit for exploring extreme noncoding conservation
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Author(s): Ge Tan, Dimitris Polychronopoulos, Boris Lenhard
Software Mentions: 6
Published: about 7 years ago

10.1111/jcmm.14938

A risk signature with four autophagy‐related genes for predicting survival of glioblastoma multiforme
Cited by: 47
Author(s): Yulin Wang, Wenjin Zhao, Zhe Xiao, Gefei Guan, Xin Liu, Minghua Zhuang
Software Mentions: 6
Published: over 6 years ago

10.3389/fgene.2020.565206

Identification and Validation of Two Lung Adenocarcinoma-Development Characteristic Gene Sets for Diagnosing Lung Adenocarcinoma and Predicting Prognosis
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Author(s): Cheng Liu, Xiang Li, Huili Shao, Dan Li
Software Mentions: 6
Published: almost 6 years ago

10.3390/biom9010012

Integrated Transcriptome Analysis Reveals Plant Hormones Jasmonic Acid and Salicylic Acid Coordinate Growth and Defense Responses upon Fungal Infection in Poplar
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Author(s): Jie Luo, Wenxiu Xia, Pei Cao, Zheng’ang Xiao, Yan Zhang, Meifeng Liu, Chengjun Zhan, Nian Wang
Software Mentions: 6
Published: almost 8 years ago

10.1111/jcmm.14991

Mutational landscape and genetic signatures of cell‐free DNA in tumour‐induced osteomalacia
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Author(s): Nan Wu, Zhen Zhang, Xi Zhou, Hengqiang Zhao, Yue Ming, Xue Wu, Xian Zhang, Xinzhuang Yang, Meng Zhou, Hua Bao, Weisheng Chen, Yong Wu, Sen Liu, Huizi Wang, Yuchen Niu, Yalun Li, Yu Zheng, Yang Shao, Na Gao, Ying Yang, Ying Liu, Wenli Li, Jia Liu, Na Zhang, Yang Xu, Yuan Xu, Mei Li, Yingli Sun, Jianzhong Su, Jianguo Zhang, Weibo Xia, Guixing Qiu, Yong Liu, Jiaqi Liu, Zhihong Wu
Software Mentions: 6
Published: over 6 years ago

10.1111/jcmm.16368

Ferroptosis‐related gene signature as a prognostic marker for lower‐grade gliomas
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Author(s): Yi Zheng, Qiang Ji, Lei Xie, Can Wang, Chunna Yu, Yali Wang, Jing Jiang, Feng Chen, Wenbin Li
Software Mentions: 6
Published: over 5 years ago

10.7717/peerj.10633

Gene signatures with predictive and prognostic survival values in human osteosarcoma
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Author(s): Zhongpeng Qiu, Xuehui Du, Kai Chen, Yi Dai, Sibo Wang, Jun Xiao, Gang Li
Software Mentions: 6
Published: almost 6 years ago

10.3390/biomedicines9091192

Self-Organization Provides Cell Fate Commitment in MSC Sheet Condensed Areas via ROCK-Dependent Mechanism
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Author(s): Peter Nimiritsky, Ekaterina Novoseletskaya, Roman Eremichev, Natalya Alexandrushkina, Maxim Karagyaur, O. V. Vetrovoy, Nataliya Basalova, А. М. Хрусталева, Alexander Tyakht, Anastasia Efimenko, В. А. Ткачук
Software Mentions: 6
Published: about 5 years ago

10.3389/fgene.2021.698040

Identification of a Ferroptosis Gene Set That Mediates the Prognosis of Squamous Cell Carcinoma of the Head and Neck
Cited by: 1
Author(s): Chunyan Li, Xuemin Wang, Rujia Qin, Zhaoming Zhong, Chuanzheng Sun
Software Mentions: 6
Published: about 5 years ago

10.3389/fgene.2021.642608

Significance of Tumor Mutation Burden Combined With Immune Infiltrates in the Progression and Prognosis of Advanced Gastric Cancer
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Author(s): Xiong Guo, Xiaolong Liang, Yujun Wang, Anqi Cheng, Han Zhang, Chuan Qin, Ziwei Wang
Software Mentions: 6
Published: over 5 years ago

10.18632/aging.202638

Identification of key genes in coronary artery disease: an integrative approach based on weighted gene co-expression network analysis and their correlation with immune infiltration
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Author(s): Yang Yang, Xiangshan Xu
Software Mentions: 6
Published: over 5 years ago

10.3389/fgene.2021.612011

TGFβ1: An Indicator for Tumor Immune Microenvironment of Colon Cancer From a Comprehensive Analysis of TCGA
Cited by: 3
Author(s): Jinyan Wang, Jinqiu Wang, Quan Gu, Yan Yang, Yajun Ma, Quan’an Zhang
Software Mentions: 6
Published: over 5 years ago

10.1186/s41065-020-00169-3

Identification of differentially expressed genes, signaling pathways and immune infiltration in rheumatoid arthritis by integrated bioinformatics analysis
Cited by: 8
Author(s): Yanzhi Ge, Li Zhou, Zuxiang Chen, Yingying Mao, Ting Li, Peijian Tong
Software Mentions: 6
Published: almost 6 years ago

10.1093/gigascience/giz022

Digital expression explorer 2: a repository of uniformly processed RNA sequencing data
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Author(s): Mark Ziemann, Antony Kaspi, Assam El‐Osta
Software Mentions: 6
Published: over 7 years ago

10.1093/gigascience/giaa117

Correcting for experiment-specific variability in expression compendia can remove underlying signals
Cited by: 16
Author(s): Alexandra Lee, YoSon Park, Georgia Doing, Deborah A. Hogan, Casey S. Greene
Software Mentions: 6
Published: almost 6 years ago

10.3389/fgene.2021.625236

Identification of Prognostic Stromal-Immune Score–Based Genes in Hepatocellular Carcinoma Microenvironment
Cited by: 4
Author(s): Shanshan Liu, Guangchuang Yu, Li Liu, Xiaobao Zou, Lang Zhou, Erqiang Hu, Yang Song
Software Mentions: 6
Published: over 5 years ago

10.3389/fgene.2020.00311

Weighted Gene Coexpression Network Analysis of Features That Control Cancer Stem Cells Reveals Prognostic Biomarkers in Lung Adenocarcinoma
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Author(s): Yi Liao, Yulei Wang, Mengqing Cheng, Chengliang Huang, Xiaoxuan Fan
Software Mentions: 6
Published: over 6 years ago

Projects: bioconductor: clusterProfiler

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Papers Mentioning clusterProfiler 2,223