Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: clusterProfiler

https://packages.ecosyste.ms/registries/bioconductor.org/packages/clusterProfiler

A universal enrichment tool for interpreting omics data
2 versions
Latest release: 7 months ago
53 dependent packages
1,189,928 downloads total

Papers Mentioning clusterProfiler 2,223

10.1155/2020/4086864

Identification of the Active Constituents and Significant Pathways of Cangfu Daotan Decoction for the Treatment of PCOS Based on Network Pharmacology
Cited by: 13
Author(s): Wenting Xu, Mengyu Tang, Jiahui Wang, Lihong Wang
Software Mentions: 1
Published: about 4 years ago

10.3389/fgene.2021.679150

Identification of a Genome Instability-Associated LncRNA Signature for Prognosis Prediction in Colon Cancer
Cited by: 10
Author(s): Tao Yin, Dongyan Zhao, Shukun Yao
Software Mentions: 1
Published: almost 3 years ago

10.3389/fgene.2020.00206

CircRNA Expression Profiles and the Potential Role of CircZFP644 in Mice With Severe Acute Pancreatitis via Sponging miR-21-3p
Cited by: 11
Author(s): Yi Yang, Jiandong Ren, Qilin Huang, Jun Wu, Xiaohui Yuan, Wen Jiang, Yi Wen, Lijun Tang, Haiyan Sun
Software Mentions: 1
Published: about 4 years ago

10.3389/fgene.2021.650863

Integrated Multiomic Analysis Reveals the High-Fat Diet Induced Activation of the MAPK Signaling and Inflammation Associated Metabolic Cascades via Histone Modification in Adipose Tissues
Cited by: 9
Author(s): Zhe Wang, Ming Zhu, Meng Wang, Yihui Gao, Cong Zhang, Shangyun Liu, Shen Qu, Zhongmin Liu, Chao Zhang
Software Mentions: 1
Published: almost 3 years ago

10.1186/s12935-021-02054-z

Targeting DNAJC19 overcomes tumor growth and lung metastasis in NSCLC by regulating PI3K/AKT signaling
Cited by: 4
Author(s): Jianguo Zhou, Peng Yang, Yingming Gao, Taiyu Chen, Pengcheng Li, Ke Xu, Tao Liu, Tao Ren
Software Mentions: 1
Published: almost 3 years ago

10.1186/s12935-020-01345-1

DNA methylation-based classification and identification of bladder cancer prognosis-associated subgroups
Cited by: 14
Author(s): Zijian Tian, Lingfeng Meng, Xingbo Long, Tongxiang Diao, Mao‐Lin Hu, Miao Wang, Ming Liu, Qianqian Wang
Software Mentions: 1
Published: almost 4 years ago

10.3389/fgene.2020.521004

Identification and Validation of Potential Pathogenic Genes and Prognostic Markers in ESCC by Integrated Bioinformatics Analysis
Cited by: 10
Author(s): Lu Tang, Yuqiao Chen, Ping Xiong, Yuan Zhou, Hong Jiang, Wei Guo, Wei Zhuang
Software Mentions: 1
Published: over 3 years ago

10.3389/fgene.2021.655284

HN-CNN: A Heterogeneous Network Based on Convolutional Neural Network for m7 G Site Disease Association Prediction
Cited by: 7
Author(s): Lin Zhang, Jin Chen, Jiani Ma, Hui Liu
Software Mentions: 1
Published: about 3 years ago

10.1186/s12906-020-03026-y

Network pharmacology exploration reveals a common mechanism in the treatment of cardio-cerebrovascular disease with Salvia miltiorrhiza Burge. and Carthamus tinctorius L
Cited by: 13
Author(s): Yu Wang, Yajun Shi, Junbo Zou, Xiaofei Zhang, Yulin Liang, Jia Tai, Cheng‐Bin Cui, Mei Wang, Deliang Guo
Software Mentions: 1
Published: over 3 years ago

10.1186/s12885-020-07541-6

High expression of fibroblast activation protein (FAP) predicts poor outcome in high-grade serous ovarian cancer
Cited by: 27
Author(s): Min Li, Xue Cheng, Rong Rong, Yan Gao, Xiuwu Tang, Youguo Chen
Software Mentions: 1
Published: over 3 years ago

10.1186/s12885-020-07457-1

Genetically-regulated transcriptomics & copy number variation of proctitis points to altered mitochondrial and DNA repair mechanisms in individuals of European ancestry
Cited by: 5
Author(s): Gita A. Pathak, Renato Polimanti, Talisa Silzer, Frank R. Wendt, Ranajit Chakraborty, Nicole R. Phillips
Software Mentions: 1
Published: over 3 years ago

10.1186/s12935-021-02183-5

Immune classifier-based signatures provide good prognostic stratification and predict the clinical benefits of immune-based therapies for hepatocellular carcinoma
Cited by: 4
Author(s): Chen Xue, Xinyu Gu, Lanjuan Li
Software Mentions: 1
Published: over 2 years ago

10.3390/cancers11111724

Coupled Genome-Wide DNA Methylation and Transcription Analysis Identified Rich Biomarkers and Drug Targets in Triple-Negative Breast Cancer
Cited by: 7
Author(s): Maoni Guo, Siddharth Sinha, San Ming Wang
Software Mentions: 1
Published: over 4 years ago

10.3390/cancers12123667

Common and Unique Transcription Signatures of YAP and TAZ in Gastric Cancer Cells
Cited by: 9
Author(s): Yaelim Lee, Megan Finch-Edmondson, Hamizah Ahmad Cognart, Bowen Zhu, Haiwei Song, Boon Chuan Low, Marius Sudol
Software Mentions: 1
Published: over 3 years ago

10.18632/aging.103715

Development and validation of a survival model for thyroid carcinoma based on autophagy-associated genes
Cited by: 9
Author(s): Baoai Han, Xiuping Yang, Davood K Hosseini, Pan Luo, Mengzhi Liu, Xiaoxiang Xu, Ya Zhang, Hongguo Su, Tao Zhou, Haiying Sun, Xiong Chen
Software Mentions: 1
Published: over 3 years ago

10.1186/s13148-021-01067-9

Identification of DNA methylation markers for early detection of CRC indicates a role for nervous system-related genes in CRC
Cited by: 21
Author(s): Glenn Rademakers, Maartje Massen, Alexander Koch, Muriel X.G. Draht, Nikkie Buekers, Kristien Wouters, Nathalie Vaes, Tim De Meyer, Beatriz Carvalho, Gerrit A. Meijer, James G. Herman, Kim M. Smits, Manon van Engeland, Veerle Melotte
Software Mentions: 1
Published: about 3 years ago

10.1038/s41598-020-79086-4

Different expression of lipid metabolism-related genes in Shandong black cattle and Luxi cattle based on transcriptome analysis
Cited by: 27
Author(s): Ruili Liu, Xianxun Liu, Xuejin Bai, Xiao Chen, Yanjun Dong
Software Mentions: 1
Published: over 3 years ago

10.1038/s41413-020-00121-1

Osteoclast-derived apoptotic bodies couple bone resorption and formation in bone remodeling
Cited by: 34
Author(s): Qinyu Ma, Mengmeng Liang, Yutong Wu, Fei Luo, Zaisong Ma, Shiwu Dong, Jiake Xu, Ce Dou
Software Mentions: 1
Published: over 3 years ago

10.1186/s13068-021-01956-4

Over-expression of an electron transport protein OmcS provides sufficient NADH for d-lactate production in cyanobacterium
Cited by: 17
Author(s): Hengkai Meng, Wei Zhang, Huawei Zhu, Fan Yang, Yanping Zhang, Jie Zhou, Yin Li
Software Mentions: 1
Published: about 3 years ago

10.1002/advs.201902926

Targeting Super‐Enhancers via Nanoparticle‐Facilitated BRD4 and CDK7 Inhibitors Synergistically Suppresses Pancreatic Ductal Adenocarcinoma
Cited by: 29
Author(s): Chen‐Song Huang, Xinru You, Chenyang Dai, Qiong‐Cong Xu, Fuxi Li, Li Wang, Xi‐Tai Huang, Jie‐Qin Wang, Shijin Li, Zhuoxing Gao, Jun Wu, Xiaoyu Yin, Wei Zhao
Software Mentions: 1
Published: over 4 years ago

10.1042/BSR20203565

Uncovering the mechanism of Ge-Gen-Qin-Lian decoction for treating ulcerative colitis based on network pharmacology and molecular docking verification
Cited by: 19
Author(s): Lin Xu, Jiaqi Zhang, Yifan Wang, Zedan Zhang, Fengyun Wang, Xudong Tang
Software Mentions: 1
Published: over 3 years ago

10.18632/oncotarget.13379

Assessment of differentially expressed plasma microRNAs in nonsyndromic cleft palate and nonsyndromic cleft lip with cleft palate
Cited by: 27
Author(s): Jingyun Li, Jijun Zou, Qian Li, Ling Chen, Yanli Gao, Hui Yan, Bei Zhou, Jun Li
Software Mentions: 1
Published: over 7 years ago

10.3389/fnut.2021.639467

Network and 16S rRNA Sequencing-Combined Approach Provides Insightal Evidence of Vitamin K2 for Salt-Sensitive Hypertension
Cited by: 6
Author(s): Tianhao Liu, Minghao Chen, Wan-qing Tu, Qiuer Liang, Wencong Tao, Jin Zhen, Xiao Ye, Liguo Chen
Software Mentions: 1
Published: about 3 years ago