10.1186/s12915-021-01147-5

Single-cell DNA and RNA sequencing reveals the dynamics of intra-tumor heterogeneity in a colorectal cancer model
Cited by: 13
Author(s): Hisayo Ono, Yasuhito Arai, Eisaku Furukawa, Daichi Narushima, Tetsuya Matsuura, Hiromi Nakamura, Daisuke Shiokawa, Masaya Nagai, Toshio Imai, Koshi Mimori, Koji Okamoto, Yoshitaka Hippo, Tatsuhiro Shibata, Mamoru Kato
Software Mentions: 6
Published: almost 5 years ago

10.3389/fpsyg.2020.02100

COVID-19 Outbreak and Physical Activity in the Italian Population: A Cross-Sectional Analysis of the Underlying Psychosocial Mechanisms
Cited by: 64
Author(s): Andrea Chirico, Fabio Lucidi, Federica Galli, Francesco Giancamilli, Jacopo Antonino Vitale, Stefano Borghi, Antonio La Torre, Roberto Codella
Software Mentions: 6
Published: almost 6 years ago

10.7554/eLife.58371

Bacterial symbiont subpopulations have different roles in a deep-sea symbiosis
Cited by: 17
Author(s): Tjorven Hinzke, Manuel Kleiner, Mareike Meister, Rabea Schlüter, Christian Hentschker, Jan Pané‐Farré, Petra Hildebrandt, Horst Felbeck, Stefan M. Sievert, Florian Bonn, Uwe Völker, Dörte Becher, Thomas Schweder, Stephanie Markert
Software Mentions: 6
Published: over 5 years ago

10.1186/s12859-018-2226-y

DrImpute: imputing dropout events in single cell RNA sequencing data
Cited by: 243
Author(s): Wuming Gong, Il-Youp Kwak, Pruthvi Pota, Naoko Koyano-Nakagawa, Daniel J. Garry
Software Mentions: 6
Published: about 8 years ago

10.1038/s41598-018-36887-y

Regulation of volatile and non-volatile pheromone attractants depends upon male social status
Cited by: 25
Author(s): Michaela Thoß, Kenneth C. Luzynski, Viktoria M. Enk, Ebrahim Razzazi-Fazeli, Jae Kwak, Irene Ortner, Dustin J. Penn
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.ppat.1009029

Drivers of within-host genetic diversity in acute infections of viruses
Cited by: 22
Author(s): Maoz Gelbart, Sheri Harari, Ya’ara Ben-Ari, Talia Kustin, Dana Wolf, Michal Mandelboim, Orna Mor, Pleuni S. Pennings, Adi Stern
Software Mentions: 6
Published: over 5 years ago

10.3390/ijms20246303

Mitochondrial Bioenergetics in Brain Following Ozone Exposure in Rats Maintained on Coconut, Fish and Olive Oil-Rich Diets
Cited by: 14
Author(s): Matthew C. Valdez, Danielle L. Freeborn, Joseph M. Valdez, Andrew F.M. Johnstone, Samantha J. Snow, Alan Tennant, Urmila P. Kodavanti, Prasada Rao S. Kodavanti
Software Mentions: 6
Published: over 6 years ago

10.1186/s12866-020-01806-7

Co-occurrence pattern and function prediction of bacterial community in Karst cave
Cited by: 23
Author(s): Yiyi Dong, Jie Gao, Qingshan Wu, Yilang Ai, Yu Feng Huang, Wenzhang Wei, Shiyu Sun, Qingbei Weng
Software Mentions: 6
Published: about 6 years ago

10.1038/s41598-019-40007-9

Language Outcomes in Adults with a History of Institutionalization: Behavioral and Neurophysiological Characterization
Cited by: 12
Author(s): Sergey A. Kornilov, Marina A. Zhukova, Irina V. Ovchinnikova, Irina V. Golovanova, O. Yu. Naumova, Tatiana Logvinenko, Aleksandra O. Davydova, M.V. Petrov, Maria Adebowale, Elena L. Grigorenko
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-021-88501-3

Genome-wide insights on gastrointestinal nematode resistance in autochthonous Tunisian sheep
Cited by: 17
Author(s): Abulgasim Ahbara, Mariem Rouatbi, Mohamed Gharbi, Mourad Rekik, Aynalem Haile, Barbara Rischkowsky, Joram M. Mwacharo
Software Mentions: 6
Published: about 5 years ago

10.1007/s00442-017-3895-3

Long-term deer exclosure alters soil properties, plant traits, understory plant community and insect herbivory, but not the functional relationships among them
Cited by: 16
Author(s): Jörg G. Stephan, Fereshteh Pourazari, Kristina Tattersdill, Takuya Kobayashi, Keita Nishizawa, Jonathan R. De Long
Software Mentions: 6
Published: about 9 years ago

10.1371/journal.pone.0192023

Spatiotemporal patterns of the macrofaunal community structure in the East China Sea, off the coast of Zhejiang, China, and the impact of the Kuroshio Branch Current
Cited by: 5
Author(s): Yong Xu, Fei Yu, Xinzheng Li, Lin Ma, Dong Dong, Qi Kou, Jixing Sui, Zhibin Gan, Lin Gong, Mei Yang, Yue-Yun Wang, Yue Sun, Jinbao Wang, Hongfa Wang
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pone.0193929

Association of gadolinium-enhanced magnetic resonance imaging with hepatic fibrosis and inflammation in primary sclerosing cholangitis
Cited by: 7
Author(s): Sarah Keller, Annette Aigner, Roman Zenouzi, Anne C. Kim, Arnoud C. Meijer, Sören Weidemann, Till Krech, Ansgar W. Lohse, Gerhard Adam, Christoph Schramm, Jin Yamamura
Software Mentions: 6
Published: over 8 years ago

10.7717/peerj.4794

A brief introduction to mixed effects modelling and multi-model inference in ecology
Cited by: 1,148
Author(s): Xavier A. Harrison, Lynda Donaldson, M. Correa-Cano, Julian C. Evans, David N. Fisher, Cecily E. D. Goodwin, Beth S. Robinson, David J. Hodgson, Richard Inger
Software Mentions: 6
Published: about 8 years ago

10.1186/s12920-021-01003-z

Repeat to gene expression ratios in leukemic blast cells can stratify risk prediction in acute myeloid leukemia
Cited by: 5
Author(s): Megumi Onishi-Seebacher, Galina Erikson, Zoe Sawitzki, Devon P. Ryan, Gabriele Greve, Michael Lübbert, Thomas Jenuwein
Software Mentions: 6
Published: about 5 years ago

10.3390/toxins11110624

Analysis of the Use of Cylindrospermopsin and/or Microcystin-Contaminated Water in the Growth, Mineral Content, and Contamination of Spinacia oleracea and Lactuca sativa
Cited by: 22
Author(s): María Llana-Ruiz-Cabello, Ángeles Jos, Ana M. Cameán, Flávio Luís de Oliveira, Aldo Barreiro Felpeto, J.A.T. Machado, Joana Azevedo, Edgar Pinto, Agostinho Almeida, Alexandre Campos, Vítor Vasconcelos, Marisa Freitas
Software Mentions: 6
Published: over 6 years ago

10.1186/s12864-021-07720-0

Comparative neurotranscriptomics reveal widespread species differences associated with bonding
Cited by: 5
Author(s): Joel A. Tripp, Alejandro Berrío, Lisa A. McGraw, Mikhail V. Matz, Jamie K. Davis, Kiyoshi Inoue, James W. Thomas, Larry J. Young, Steve Phelps
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0177840

Identifying artemisinin resistance from parasite clearance half-life data with a simple Shiny web application
Cited by: 3
Author(s): Tun Stt., Yoel Lubell, Arjen M. Dondorp, Tom Fieldman, Kyaw Myo Tun, O. Celhay, Xin Hui S Chan, Sompob Saralamba, Lisa J. White
Software Mentions: 6
Published: about 9 years ago

10.1038/s41598-021-89783-3

Oil palm cultivation critically affects sociality in a threatened Malaysian primate
Cited by: 8
Author(s): Anna Holzner, Krishna N. Balasubramaniam, B. Weiß, Nadine Ruppert, Anja Widdig
Software Mentions: 6
Published: about 5 years ago

10.7554/eLife.24260

Standardized mean differences cause funnel plot distortion in publication bias assessments
Cited by: 123
Author(s): Peter-Paul Zwetsloot, Mira van der Naald, Emily S. Sena, David W. Howells, Joanna IntHout, Joris A. H. de Groot, Steven A.J. Chamuleau, Malcolm Macleod, Kimberley E. Wever
Software Mentions: 6
Published: almost 9 years ago

10.2196/25000

Mortality Prediction of Patients With Cardiovascular Disease Using Medical Claims Data Under Artificial Intelligence Architectures: Validation Study
Cited by: 2
Author(s): Linh Tran, Lianhua Chi, Alessio Bonti, Mohamed Abdelrazek, Yi‐Ping Phoebe Chen
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0068826

SIMS: A Hybrid Method for Rapid Conformational Analysis
Cited by: 14
Author(s): Bryant Gipson, Mark Moll, Lydia E. Kavraki
Software Mentions: 6
Published: almost 13 years ago

10.1186/s12862-016-0702-4

Fine-scale genetic structure among greater sage-grouse leks in central Nevada
Cited by: 18
Author(s): Joshua P. Jahner, Daniel D. Gibson, Chava L. Weitzman, Erik J. Blomberg, James S. Sedinger, Thomas L. Parchman
Software Mentions: 6
Published: about 10 years ago

10.3390/insects10110388

Transgenic Winter Wheat Expressing the Sucrose Transporter HvSUT1 from Barley does not Affect Aphid Performance
Cited by: 4
Author(s): Yan Yang, Stefanie Kloos, Isabel Mora-Ramírez, Jörg Romeis, Susanne Brunner, Yunhe Li, Michael Meissle
Software Mentions: 6
Published: over 6 years ago

10.1186/s12859-020-3404-2

IPCO: Inference of Pathways from Co-variance analysis
Cited by: 3
Author(s): Mrinmoy Das, Tarini Shankar Ghosh, Ian B. Jeffery
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-021-87797-5

Cooperation among unrelated ant queens provides persistent growth and survival benefits during colony ontogeny
Cited by: 6
Author(s): Madeleine M. Ostwald, Xiaohui Guo, Tyler Wong, Armon Malaekeh, Jon F. Harrison, Jennifer H. Fewell
Software Mentions: 6
Published: about 5 years ago

10.1186/1471-2105-11-380

R-Gada: a fast and flexible pipeline for copy number analysis in association studies
Cited by: 48
Author(s): Roger Piqué-Regi, Alejandro Cáceres, Juan R. González
Software Mentions: 6
Published: almost 16 years ago

10.1186/s13054-020-03199-5

The obesity paradox in critically ill patients: a causal learning approach to a casual finding
Cited by: 27
Author(s): Alexander Decruyenaere, Johan Stéen, Kirsten Colpaert, Dominique Benoît, Johan Decruyenaere, Stijn Vansteelandt
Software Mentions: 6
Published: almost 6 years ago

10.1007/s00125-021-05448-w

Prognostic models for predicting the risk of foot ulcer or amputation in people with type 2 diabetes: a systematic review and external validation study
Cited by: 9
Author(s): Joline W.J. Beulens, J. S. Yauw, Petra Elders, Talitha Feenstra, Ron M. C. Herings, Roderick C. Slieker, Karel G.M. Moons, Giel Nijpels, Amber A. van der Heijden
Software Mentions: 6
Published: about 5 years ago

10.1002/cyto.a.23775

Automating the Shared Resource Laboratory Using Computer Scripts: A Case Report
Cited by: 0
Author(s): Christopher Hall, Laura Brown, Jennifer Graham, Sam Thompson, Bee Ling Ng
Software Mentions: 6
Published: about 7 years ago

10.1186/s12938-017-0416-x

Empirical study of seven data mining algorithms on different characteristics of datasets for biomedical classification applications
Cited by: 37
Author(s): Yiyan Zhang, Yi Xin, Li Qin, Jianshe Ma, Shuai Li, Xiaodan Lv, Weiqi Lv
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pntd.0009537

Spatio-temporal modelling of the first Chikungunya epidemic in an intra-urban setting: The role of socioeconomic status, environment and temperature
Cited by: 10
Author(s): Laís Picinini Freitas, Alexandra M. Schmidt, William Cossich, Oswaldo Gonçalves Cruz, Marília Sá Carvalho
Software Mentions: 6
Published: about 5 years ago

10.3389/fpsyg.2019.00031

A Tendency Towards Details? Inconsistent Results on Auditory and Visual Local-To-Global Processing in Absolute Pitch Musicians
Cited by: 9
Author(s): Teresa Wenhart, Eckart Altenmüller
Software Mentions: 6
Published: over 7 years ago

10.1155/2021/9591670

Machine Learning-Based Ensemble Model for Zika Virus T-Cell Epitope Prediction
Cited by: 31
Author(s): Syed Nisar Hussain Bukhari, Amit Jain, Ehtishamul Haq, Moaiad Ahmad Khder, Rahul Neware, Jyoti Bhola, Moslem Lari Najafi
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0070038

Integrating Life Stages into Ecological Niche Models: A Case Study on Tiger Beetles
Cited by: 9
Author(s): Ángela Taboada, Henrik von Wehrden, Thorsten Aßmann
Software Mentions: 6
Published: almost 13 years ago

10.1098/rsos.191511

Foraging niche overlap during chick-rearing in the sexually dimorphic Westland petrel
Cited by: 2
Author(s): Timothée Poupart, Susan M. Waugh, Akiko Kato, John P. Y. Arnould
Software Mentions: 6
Published: over 5 years ago

10.1017/cts.2017.310

RRApp, a robust randomization app, for clinical and translational research
Cited by: 9
Author(s): Chengcheng Tu, Emma K. T. Benn
Software Mentions: 6
Published: over 8 years ago

10.1186/s13015-016-0068-6

Bitpacking techniques for indexing genomes: II. Enhanced suffix arrays
Cited by: 2
Author(s): Thomas D. Wu
Software Mentions: 6
Published: about 10 years ago

10.3389/fcell.2020.00234

Recent Advances in Computer-Assisted Algorithms for Cell Subtype Identification of Cytometry Data
Cited by: 17
Author(s): Peng Liu, Silvia Liu, Yusi Fang, Xiangning Xue, Jian Zou, George C. Tseng, Liza Konnikova
Software Mentions: 6
Published: about 6 years ago

10.3389/fmicb.2019.00618

Metagenomic Insights Into a Cellulose-Rich Niche Reveal Microbial Cooperation in Cellulose Degradation
Cited by: 32
Author(s): Jin-Ming Cui, Guoqin Mai, Zuowei Wang, Quan Liu, Yan Zhou, Yingfei Ma, Chenli Liu
Software Mentions: 6
Published: over 7 years ago

10.3389/fpsyg.2020.00905

From Abstract Symbols to Emotional (In-)Sights: An Eye Tracking Study on the Effects of Emotional Vignettes and Pictures
Cited by: 5
Author(s): Franziska Usée, Arthur Jacobs, Jana Lüdtke
Software Mentions: 6
Published: about 6 years ago

10.3389/fpsyg.2021.713839

Stereotype Content at the Intersection of Gender and Sexual Orientation
Cited by: 10
Author(s): Amanda Klysing, Anna Lindqvist, Fredrik Björklund
Software Mentions: 6
Published: almost 5 years ago

10.1186/s13059-020-1947-1

Assembly of hundreds of novel bacterial genomes from the chicken caecum
Cited by: 95
Author(s): Laura Glendinning, Robert D. Stewart, Mark J. Pallen, Kellie Watson, Mick Watson
Software Mentions: 6
Published: over 6 years ago

10.3389/fpls.2018.00599

Landscape- and Local-Scale Actions Are Essential to Conserve Regional Macrophyte Biodiversity
Cited by: 4
Author(s): Munemitsu Akasaka, Shinsuke Higuchi, Noriko Takamura
Software Mentions: 6
Published: about 8 years ago

10.15252/emmm.202013257

Urinary proteome profiling for stratifying patients with familial Parkinson’s disease
Cited by: 66
Author(s): Sebastian Virreira Winter, Özge Karayel, Mike Strauss, Shalini Padmanabhan, Matthew Surface, Kalpana Merchant, Matthias Mann
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms8101554

HybridMine: A Pipeline for Allele Inheritance and Gene Copy Number Prediction in Hybrid Genomes and Its Application to Industrial Yeasts
Cited by: 6
Author(s): Soukaina Timouma, Jean-Marc Schwartz, Daniela Delneri
Software Mentions: 6
Published: over 5 years ago

10.1186/1751-0473-6-4

Parallel biocomputing
Cited by: 0
Author(s): Kenneth S Kompass, Thomas J. Hoffmann, John S. Witte
Software Mentions: 6
Published: over 15 years ago

10.1186/s13007-020-00591-8

The BELT and phenoSEED platforms: shape and colour phenotyping of seed samples
Cited by: 18
Author(s): Keith Halcro, Kaitlin McNabb, Ashley Lockinger, Didier Socquet-Juglard, Kirstin E. Bett, Scott D. Noble
Software Mentions: 6
Published: about 6 years ago

10.1002/ece3.3272

How shrub encroachment under climate change could threaten pollination services for alpine wildflowers: A case study using the alpine skypilot,<i>Polemonium viscosum</i>
Cited by: 8
Author(s): Jessica A. Kettenbach, Nicole E. Miller‐Struttmann, Zoë Moffett, Candace Galen
Software Mentions: 6
Published: almost 9 years ago

10.1093/ve/veaa004

Pervasive and non-random recombination in near full-length HIV genomes from Uganda
Cited by: 7
Author(s): Heather E Grant, Emma B. Hodcroft, Deogratius Ssemwanga, John M. Kitayimbwa, Gonzalo Yebra, Luis Roger Esquivel Gomez, Dan Frampton, Astrid Gall, Paul Kellam, Túlio de Oliveira, Nicholas Bbosa, Rebecca N. Nsubuga, Freddie Kibengo, Tsz Ho Kwan, Samantha Lycett, Rowland R. Kao, David L. Robertson, Oliver Ratmann, Christophe Fraser, Deenan Pillay, Pontiano Kaleebu, Andrew Brown
Software Mentions: 6
Published: over 6 years ago

10.3389/fmicb.2014.00541

Site- and horizon-specific patterns of microbial community structure and enzyme activities in permafrost-affected soils of Greenland
Cited by: 71
Author(s): Antje Gittel, Jiří Bárta, Iva Kohoutová, Jörg Schnecker, Birgit Wild, Petr Čapek, Christina Kaiser, Vigdis Torsvik, Andreas Richter, Christa Schleper, Tim Urich
Software Mentions: 6
Published: over 11 years ago

10.1186/s13321-020-0408-x

Towards reproducible computational drug discovery
Cited by: 83
Author(s): Nalini Schaduangrat, Samuel Lampa, Saw Simeon, M. Paul Gleeson, Ola Spjuth, Chanin Nantasenamat
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-019-50942-2

Hidden Markov models reveal temporal patterns and sex differences in killer whale behavior
Cited by: 8
Author(s): Jennifer B. Tennessen, Marla M. Holt, Eric J. Ward, M. Bradley Hanson, Candice K. Emmons, D. K. Giles, Joyce Hogan
Software Mentions: 6
Published: over 6 years ago

10.1098/rstb.2017.0379

c302: a multiscale framework for modelling the nervous system of <i>Caenorhabditis elegans</i>
Cited by: 37
Author(s): Padraig Gleeson, David Lung, Radu Grosu, Ramin Hasani, Stephen Larson
Software Mentions: 6
Published: almost 8 years ago

10.1186/s13148-021-01029-1

Clinical evaluation of Bladder CARE, a new epigenetic test for bladder cancer detection in urine samples
Cited by: 12
Author(s): Paolo Piatti, Yap Ching Chew, Michiko Suwoto, Taikun Yamada, Benjamin Jara, Xiaoteng Jia, Wei Guo, Saum Ghodoussipour, Siamak Daneshmand, Hamed Ahmadi, Jeffrey M. Rice, Jeffrey M. Bhasin, Faith Holloway, Yvonne Tsai, Yoshitomo Chihara, Gangning Liang
Software Mentions: 6
Published: about 5 years ago

10.1093/conphys/coaa046

Heat, health and hatchlings: associations of in situ nest temperatures with morphological and physiological characteristics of loggerhead sea turtle hatchlings from Florida
Cited by: 19
Author(s): Kelsey Alexandra Fleming, Justin R. Perrault, Nicole I. Stacy, Christina M. Coppenrath, Alison M. Gainsbury
Software Mentions: 6
Published: over 6 years ago

10.1038/s42003-020-0875-7

Heterospecific eavesdropping on an anti-parasitic referential alarm call
Cited by: 17
Author(s): Shelby L. Lawson, Janice K. Enos, Niko C. Mendes, Sharon A. Gill, Márk E. Hauber
Software Mentions: 6
Published: over 6 years ago

10.3390/cells10020235

A Multimodal Platform for Simultaneous T-cell Imaging, Defined Activation, and Mechanobiological Characterization
Cited by: 4
Author(s): Martin Fölser, Viktoria Motsch, René Platzer, Johannes B. Huppa, Gerhard J. Schütz
Software Mentions: 6
Published: over 5 years ago

10.1186/s40168-018-0449-9

The active microbial community more accurately reflects the anaerobic digestion process: 16S rRNA (gene) sequencing as a predictive tool
Cited by: 113
Author(s): Jo De Vrieze, Ameet J. Pinto, William T. Sloan, Umer Zeeshan Ijaz
Software Mentions: 6
Published: over 8 years ago

10.3390/v12070695

Ross River Virus Provokes Differentially Expressed MicroRNA and RNA Interference Responses in Aedes aegypti Mosquitoes
Cited by: 10
Author(s): J. B. Sinclair, Sassan Asgari
Software Mentions: 6
Published: about 6 years ago

10.1128/mSystems.00016-19

A Novel Sparse Compositional Technique Reveals Microbial Perturbations
Cited by: 255
Author(s): Cameron Martino, James T. Morton, Clarisse Marotz, Luke R. Thompson, Anupriya Tripathi, Rob Knight, Karsten Zengler
Software Mentions: 6
Published: over 7 years ago

10.1186/s13071-021-04717-2

Transcriptomic profiling of three-dimensional cholangiocyte spheroids long term exposed to repetitive Clonorchis sinensis excretory-secretory products
Cited by: 4
Author(s): Jung Woong Kim, Junyeong Yi, Jin‐Hong Park, Ji Hoon Jeong, Jin-Ho Kim, Jihee Won, Seok Chung, Tong Soo Kim, Jhang Ho Pak
Software Mentions: 6
Published: about 5 years ago

10.1007/s00429-020-02046-1

CBPtools: a Python package for regional connectivity-based parcellation
Cited by: 9
Author(s): Niels Reuter, Sarah Genon, Shahrzad Kharabian Masouleh, Felix Hoffstaedter, Xiaojin Liu, Tobias Kalenscher, Simon B. Eickhoff, Kaustubh R. Patil
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-020-78101-y

Meta-analysis of viscosity of aqueous deep eutectic solvents and their components
Cited by: 26
Author(s): Gudrun Gygli, Xinmeng Xu, Jürgen Pleiss
Software Mentions: 6
Published: over 5 years ago

10.1186/s13059-021-02300-7

riboCIRC: a comprehensive database of translatable circRNAs
Cited by: 39
Author(s): Huihui Li, Mingzhe Xie, Yan Wang, Ludong Yang, Zhi Xie
Software Mentions: 6
Published: over 5 years ago

10.1111/cns.13468

Immunotherapy choice and maintenance for generalized myasthenia gravis in China
Cited by: 12
Author(s): Chao Zhang, Bitao Bu, Huan Yang, Lihua Wang, Weibin Liu, Rui‐Sheng Duan, Meini Zhang, Pei Zeng, Chen Du, Li Yang, Fu‐Dong Shi
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0161018

A Reassessment of the Impact of European Contact on the Structure of Native American Genetic Diversity
Cited by: 30
Author(s): Keith Hunley, Kiela Gwin, Brendan Liberman
Software Mentions: 6
Published: almost 10 years ago

10.1038/s41598-021-96987-0

Assessing the extent and timing of chemosensory impairments during COVID-19 pandemic
Cited by: 21
Author(s): Cinzia Cecchetto, Antonella Di Pizio, Federica Genovese, Orietta Calcinoni, Alberto Macchi, Andreas Dunkel, Kathrin Ohla, Sara Spinelli, Michael C. Farruggia, Paule V. Joseph, Anna Menini, Elena Cantone, Caterina Dinnella, Maria Paola Cecchini, Anna D’Errico, Carla Mucignat‐Caretta, Valentina Parma, Michele Dibattista
Software Mentions: 6
Published: almost 5 years ago

10.7717/peerj.3270

Invasive lionfish had no measurable effect on prey fish community structure across the Belizean Barrier Reef
Cited by: 25
Author(s): Serena Hackerott, Abel Valdivia, Courtney Cox, Nyssa J. Silbiger, John F. Bruno
Software Mentions: 6
Published: about 9 years ago

10.1371/journal.pone.0080563

Cryptic Speciation Patterns in Iranian Rock Lizards Uncovered by Integrative Taxonomy
Cited by: 75
Author(s): Faraham Ahmadzadeh, Morris Flecks, Miguel Á. Carretero, Omid Mozaffari, Wolfgang Böhme, D. James Harris, Susana Freitas, Dennis Rödder
Software Mentions: 6
Published: over 12 years ago

10.1371/journal.pone.0132798

Partial Hepatectomy Induced Long Noncoding RNA Inhibits Hepatocyte Proliferation during Liver Regeneration
Cited by: 20
Author(s): Lulu Huang, Sagar S. Damle, Sheri Booten, Priyam Singh, Mahyar Sabripour, Jeff Hsu, Minji Jo, Melanie Katz, Andy Watt, Christopher E. Hart, Susan M. Freier, Brett P. Monia, Shuling Guo
Software Mentions: 6
Published: almost 11 years ago

10.3389/fgene.2021.731355

HandyCNV: Standardized Summary, Annotation, Comparison, and Visualization of Copy Number Variant, Copy Number Variation Region, and Runs of Homozygosity
Cited by: 5
Author(s): Juefei Zhou, Liyuan Liu, Thomas Lopdell, Dorian J. Garrick, Yiting Shi
Software Mentions: 6
Published: almost 5 years ago

10.7717/peerj.7604

Two salamander species respond differently to timber harvests in a managed New England forest
Cited by: 6
Author(s): Angus Mossman, Max R. Lambert, Mark S. Ashton, Jessica Wikle, Marlyse C. Duguid
Software Mentions: 6
Published: almost 7 years ago

10.3389/fpsyg.2017.01268

Age-Dependent Positivity-Bias in Children’s Processing of Emotion Terms
Cited by: 17
Author(s): Daniela Bahn, Michael Vesker, José C. García Alanis, Gudrun Schwarzer, Christina Kauschke
Software Mentions: 6
Published: almost 9 years ago

10.3389/fninf.2020.00031

Pycabnn: Efficient and Extensible Software to Construct an Anatomical Basis for a Physiologically Realistic Neural Network Model
Cited by: 4
Author(s): Ines Wichert, Sanghun Jee, Erik De Schutter, Sungho Hong
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.ppat.1009875

Short- and long-range cis interactions between integrated HPV genomes and cellular chromatin dysregulate host gene expression in early cervical carcinogenesis
Cited by: 14
Author(s): Ian J. Groves, Emma L A Drane, Marco Michalski, Jack Monahan, Cinzia G. Scarpini, Stephen Smith, Giovanni Bussotti, Csilla Várnai, Stefan Schoenfelder, Peter Fraser, Anton J. Enright, Nicholas Coleman
Software Mentions: 6
Published: almost 5 years ago

10.1172/JCI121087

An airway epithelial IL-17A response signature identifies a steroid-unresponsive COPD patient subgroup
Cited by: 69
Author(s): Stephanie A. Christenson, Maarten van den Berge, Alen Faiz, Kai Inkamp, Nirav R. Bhakta, Luke R. Bonser, Lorna Zlock, Igor Barjaktarević, R. Graham Barr, Eugene R. Bleecker, Richard C. Boucher, Russell P. Bowler, Alejandro P. Comellas, Jeffrey L. Curtis, Mei Lan K. Han, Nadia N. Hansel, Pieter S. Hiemstra, Robert J. Kaner, Jerry A. Krishnanm, Fernando J. Martínez, Wanda K. O’Neal, Robert Paine, Wim Timens, James M. Wells, Avrum Spira, David J. Erle, Prescott G. Woodruff
Software Mentions: 6
Published: over 7 years ago

10.3389/fimmu.2018.00056

The Immune and Non-Immune Pathways That Drive Chronic Gastrointestinal Helminth Burdens in the Wild
Cited by: 20
Author(s): Simon A. Babayan, Wei Liu, Graham Hamilton, Elizabeth Kilbride, Evelyn C. Rynkiewicz, Melanie Clerc, Amy B. Pedersen
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.ppat.1009304

Distinct clonal lineages and within-host diversification shape invasive Staphylococcus epidermidis populations
Cited by: 39
Author(s): Anna Both, Jia-Bin Huang, Minyue Qi, Christian Lausmann, Samira Weißelberg, Henning Büttner, Susanne Lezius, Antonio Virgilio Failla, Coralie Martin, Marc Stegger, Thorsten Gehrke, Sharmin Baig, Mustafa Citak, Malik Alawi, Martin Aepfelbacher, Holger Rohde
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pcbi.1007549

BrainIAK tutorials: User-friendly learning materials for advanced fMRI analysis
Cited by: 41
Author(s): Manoj Kumar, Cameron T. Ellis, Qingming Lu, Hejia Zhang, Mihai Capotă, Theodore L. Willke, Peter J. Ramadge, Nicholas B. Turk‐Browne, Kenneth A. Norman
Software Mentions: 6
Published: over 6 years ago

10.1007/s00248-019-01434-3

Feeding Honeybee Colonies with Honeybee-Specific Lactic Acid Bacteria (Hbs-LAB) Does Not Affect Colony-Level Hbs-LAB Composition or Paenibacillus larvae Spore Levels, Although American Foulbrood Affected Colonies Harbor a More Diverse Hbs-LAB Community
Cited by: 14
Author(s): Sepideh Lamei, Jörg G. Stephan, Bo Nilson, Sander Sieuwerts, Kristian Riesbeck, Joachim Rodrigues De Miranda, Eva Forsgren
Software Mentions: 6
Published: almost 7 years ago

10.3390/metabo11060356

Plasma Metabolites, Productive Performance and Rumen Volatile Fatty Acid Profiles of Northern Australian Bos indicus Steers Supplemented with Desmanthus and Lucerne
Cited by: 4
Author(s): Bénédicte Suybeng, E. Charmley, Christopher Gardiner, Bunmi S. Malau‐Aduli, A.E.O. Malau‐Aduli
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.ppat.1008645

The Aspergillus fumigatus transcription factor RglT is important for gliotoxin biosynthesis and self-protection, and virulence
Cited by: 23
Author(s): Laure Nicolas Annick Ries, Lakhansing Pardeshi, Zhiqiang Dong, Kaeling Tan, Jacob L. Steenwyk, Ana Cristina Colabardini, Jaire Alves Ferreira Filho, Patrícia Alves de Castro, Lilian Pereira Silva, Nycolas Willian Preite, Fausto Almeida, Leandro José de Assis, Renato Augusto Corrêa dos Santos, Paul Bowyer, Michael Bromley, Rebecca A. Owens, Seán Doyle, Marilene Demasi, Diego Hernández, Luís Eduardo Soares Netto, Mônica Tallarico Pupo, Antonis Rokas, Flávio Vieira Loures, Koon Ho Wong, Gustavo H. Goldman
Software Mentions: 6
Published: almost 6 years ago

10.3389/fmicb.2019.02278

Assessment of Artificial and Natural Transport Mechanisms of Ice Nucleating Particles in an Alpine Ski Resort in Obergurgl, Austria
Cited by: 4
Author(s): Philipp Baloh, Nora Els, Robert O. David, Catherine Larose, Karin Whitmore, Birgit Sattler, Hinrich Grothe
Software Mentions: 6
Published: almost 7 years ago

10.1038/s42003-021-02181-3

Multiparametric biophysical profiling of red blood cells in malaria infection
Cited by: 9
Author(s): Shreya Deshmukh, Bikash Shakya, Anna Chen, Naside Gözde Durmus, Bryan Greenhouse, Elizabeth S. Egan, Utkan Demirci
Software Mentions: 6
Published: about 5 years ago

10.3389/fvets.2020.588749

The Welfare of Beef Cattle in the Scientific Literature From 1990 to 2019: A Text Mining Approach
Cited by: 4
Author(s): Elena Nalon, Barbara Contiero, Flaviana Gottardo, Giulio Cozzi
Software Mentions: 6
Published: over 5 years ago

10.1098/rstb.2017.0380

Geppetto: a reusable modular open platform for exploring neuroscience data and models
Cited by: 23
Author(s): Matteo Carandini, Bóris Marin, Adrián Quintana, Matt Earnshaw, Robert Court, Padraig Gleeson, Salvador Durá-Bernal, R. Angus Silver, Giovanni Idili
Software Mentions: 6
Published: almost 8 years ago

10.3390/biology10090943

Response to Climate Change: Evaluation of Methane Emissions in Northern Australian Beef Cattle on a High Quality Diet Supplemented with Desmanthus Using Open-Circuit Respiration Chambers and GreenFeed Emission Monitoring Systems
Cited by: 6
Author(s): Bénédicte Suybeng, Felista W. Mwangi, Christopher S. McSweeney, E. Charmley, Christopher Gardiner, Bunmi S. Malau‐Aduli, A.E.O. Malau‐Aduli
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.ppat.1008408

Integrating GWAS with bulk and single-cell RNA-sequencing reveals a role for LY86 in the anti-Candida host response
Cited by: 16
Author(s): Dylan de Vries, Vasiliki Matzaraki, Olivier B. Bakker, Harm Brugge, Harm-Jan Westra, Mihai G. Netea, Lude Franke, Vinod Kumar, Monique G. P. van der Wijst
Software Mentions: 6
Published: over 6 years ago

10.3762/bjnano.9.20

Humidity-dependent wound sealing in succulent leaves of <i>Delosperma cooperi –</i> An adaptation to seasonal drought stress
Cited by: 29
Author(s): Olga Speck, Mark Schlechtendahl, Florian Borm, Tim Kampowski, Thomas Speck
Software Mentions: 6
Published: over 8 years ago

10.3390/brainsci10080542

Reduced Attentional Control in Older Adults Leads to Deficits in Flexible Prioritization of Visual Working Memory
Cited by: 4
Author(s): Sarah Henderson, Holly Lockhart, Emily E. Davis, Stephen M. Emrich, Karen L. Campbell
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12862-021-01877-8

How do lizard niches conserve, diverge or converge? Further exploration of saurian evolutionary ecology
Cited by: 5
Author(s): Nicolás Pelegrín, Kirk O. Winemiller, Laurie J. Vitt, Daniel B. Fitzgerald, Eric R. Pianka
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0103256

Low-Intensity Agricultural Landscapes in Transylvania Support High Butterfly Diversity: Implications for Conservation
Cited by: 69
Author(s): Jacqueline Loos, Ine Dorresteijn, Jan Hanspach, Pascal Fust, László Rákosy, Joern Fischer
Software Mentions: 6
Published: almost 12 years ago

10.1186/s12864-020-6481-8

Fluorescent amplification for next generation sequencing (FA-NGS) library preparation
Cited by: 5
Author(s): Jennifer Chiniquy, Megan E. Garber, Aindrila Mukhopadhyay, Nathan J. Hillson
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.ppat.1007634

The ETS transcription factor ELF1 regulates a broadly antiviral program distinct from the type I interferon response
Cited by: 49
Author(s): Leon Louis Seifert, Clara Si, Debjani Saha, Mohammad Sadic, Maren de Vries, Sarah Ballentine, Aaron Briley, Guojun Wang, Ana M. Valero-Jimenez, Adil Mohamed, Uwe Schaefer, Hong M. Moulton, Adolfo Garcı́a-Sastre, Shashank Tripathi, Brad R. Rosenberg, Meike Dittmann
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.ppat.1008754

JNK pathway restricts DENV2, ZIKV and CHIKV infection by activating complement and apoptosis in mosquito salivary glands
Cited by: 37
Author(s): Avisha Chowdhury, Cassandra M. Modahl, Siok Thing Tan, Benjamin Wong Wei Xiang, Dorothée Missé, Thomas Vial, R. Manjunatha Kini, Julien Pompon
Software Mentions: 6
Published: almost 6 years ago

10.1186/s13073-021-00844-8

The colorectal cancer-associated faecal microbiome of developing countries resembles that of developed countries
Cited by: 21
Author(s): Caroline Young, Henry M. Wood, Ramakrishnan Ayloor Seshadri, Pham Van Nang, Carlos Vaccaro, Luis Contreras Melendez, Mayilvahanan Bose, Mai Van Doi, Tamara Alejandra Piñero, Camilo Tapia Valladares, Julieta Argüero, Alba Fuentes Balaguer, Kelsey N. Thompson, Yan Yan, Curtis Huttenhower, Philip Quirke
Software Mentions: 6
Published: over 5 years ago

10.3390/v12080891

Viral Metagenomic Profiling of Croatian Bat Population Reveals Sample and Habitat Dependent Diversity
Cited by: 17
Author(s): Ivana Šimić, Tomaž Mark Zorec, Ivana Lojkić, Nina Krešić, Mario Poljak, Florence Cliquet, Evelyne Picard-Meyer, Marine Wasniewski, Vida Zrnčić, Anđela Čukušić, Tomislav Bedeković
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-019-38979-9

Integrative modeling reveals key chromatin and sequence signatures predicting super-enhancers
Cited by: 10
Author(s): Aziz Khan, Xuegong Zhang
Software Mentions: 6
Published: over 7 years ago

10.3390/toxins11010019

Interannual Variability of Dinophysis acuminata and Protoceratium reticulatum in a Chilean Fjord: Insights from the Realized Niche Analysis
Cited by: 23
Author(s): Catharina Alves‐de‐Souza, José Luis Iriarte, Jorge I. Mardones
Software Mentions: 6
Published: over 7 years ago