10.1001/jamanetworkopen.2019.8116

Assessment of Therapeutic Interventions and Lung Protective Ventilation in Patients With Moderate to Severe Acute Respiratory Distress Syndrome
Cited by: 58
Author(s): Hiroko Aoyama, Kanji Uchida, Kazuyoshi Aoyama, Petros Pechlivanoglou, Marina Englesakis, Yosuke Yamada, Eddy Fan
Software Mentions: 6
Published: almost 7 years ago

10.1186/s12874-021-01305-x

Discovering the underlying typology of emergency departments
Cited by: 0
Author(s): Marine Demarquet, Laurie Fraticelli, Julie Freyssenge, Clément Claustre, M. Martinez, J. Duchenne, Carlos El Khoury, Abdesslam Redjaline, Karim Tazarourte
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0212668

Determinants of the little auk (Alle alle) breeding colony location and size in W and NW coast of Spitsbergen
Cited by: 28
Author(s): Liliana Katarzyna Keslinka, Katarzyna Wojczulanis‐Jakubas, Dariusz Jakubas, Grzegorz Neubauer
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pone.0193759

Sharing-based social capital associated with harvest production and wealth in the Canadian Arctic
Cited by: 25
Author(s): Elspeth Ready
Software Mentions: 6
Published: over 8 years ago

10.18632/oncotarget.20266

SLC2A2 (GLUT2) as a novel prognostic factor for hepatocellular carcinoma
Cited by: 58
Author(s): Yun Hak Kim, Dae Cheon Jeong, Kyoungjune Pak, Myoung‐Eun Han, Jiyoung Kim, Liangwen Liu, Hyun Jin Kim, Tae Woo Kim, Tae Hwa Kim, Dong Choon Hyun, Sae‐Ock Oh
Software Mentions: 6
Published: almost 9 years ago

10.7554/eLife.37925

Multiple tumor suppressors regulate a HIF-dependent negative feedback loop via ISGF3 in human clear cell renal cancer
Cited by: 22
Author(s): Lili Liao, Zongzhi Z. Liu, Lauren Langbein, Weijia Cai, Eunah Cho, Jie Na, Xiaohua Niu, Wei Jiang, Zhijiu Zhong, Wesley L. Cai, Geetha Jagannathan, Essel Dulaimi, Joseph R. Testa, Robert G. Uzzo, Yuxin Wang, George R. Stark, Jianxin Sun, Stephen C. Peiper, Yaomin Xu, Qin Yan, Haifeng Yang
Software Mentions: 6
Published: over 7 years ago

10.1093/gigascience/giz022

Digital expression explorer 2: a repository of uniformly processed RNA sequencing data
Cited by: 41
Author(s): Mark Ziemann, Antony Kaspi, Assam El‐Osta
Software Mentions: 6
Published: over 7 years ago

10.3389/fpsyg.2018.00830

Short Forms of Wechsler Scales Assessing the Intellectually Gifted Children Using Simulation Data
Cited by: 17
Author(s): Alexandre Aubry, Béatrice Bourdin
Software Mentions: 6
Published: about 8 years ago

10.3389/fcell.2021.723676

Integrative Epigenome Map of the Normal Human Prostate Provides Insights Into Prostate Cancer Predisposition
Cited by: 5
Author(s): Tao Wang, Juan Song, Min Qu, Xu Gao, Wenhui Zhang, Ziwei Wang, Lin Zhao, Yan Wang, Bing Li, Jing Li, Jinjian Yang
Software Mentions: 6
Published: almost 5 years ago

10.3897/zookeys.603.8271

Taxonomic revision of the Malagasy Nesomyrmex madecassus species-group using a quantitative morphometric approach
Cited by: 4
Author(s): Sándor Csősz, Brian L. Fisher
Software Mentions: 6
Published: about 10 years ago

10.3389/fcell.2021.583555

DNA Methylation Regulates Transcription Factor-Specific Neurodevelopmental but Not Sexually Dimorphic Gene Expression Dynamics in Zebra Finch Telencephalon
Cited by: 8
Author(s): Jolien Diddens, Louis Coussement, Carolina Frankl-Vilches, Gaurav Majumdar, Sandra Steyaert, Sita M. ter Haar, Jeroen Galle, Ellen De Meester, Sarah De Keulenaer, Wim Van Criekinge, Charlotte Cornil, Jacques Balthazart, Annemie Van der Linden, Tim De Meyer, Wim Vanden Berghe
Software Mentions: 6
Published: over 5 years ago

10.3389/fpsyg.2021.654266

The Influence of Language on Spatial Reasoning: Reading Habits Modulate the Formulation of Conclusions and the Integration of Premises
Cited by: 0
Author(s): Thomas Castelain, Jean-Baptiste Van der Henst
Software Mentions: 6
Published: about 5 years ago

10.1186/s13578-019-0334-7

The metabolic network model of primed/naive human embryonic stem cells underlines the importance of oxidation-reduction potential and tryptophan metabolism in primed pluripotency
Cited by: 6
Author(s): Meisam Yousefi, Sayed-Amir Marashi, Ali Sharifi‐Zarchi, Sara Taleahmad
Software Mentions: 6
Published: almost 7 years ago

10.1038/s41597-020-0458-y

Epigenomic profiling of neuroblastoma cell lines
Cited by: 23
Author(s): Kristen Upton, Apexa Modi, Khushbu Patel, Nathan M. Kendsersky, Karina L. Conkrite, Robyn T. Sussman, Gregory P. Way, Rebecca N. Adams, Gregory I. Sacks, Paolo Fortina, Sharon J. Diskin, John M. Maris, Jo Lynne Rokita
Software Mentions: 6
Published: about 6 years ago

10.1038/s41598-021-87296-7

Genomic prediction for growth using a low-density SNP panel in dromedary camels
Cited by: 9
Author(s): Morteza Bitaraf Sani, Javad Zare Harofte, Mohammad Hossein Banabazi, Saeid Esmaeilkhanian, Ali Naderi, Nader Salim, Abbas Teimoori, Ahmad Bitaraf, Mohammad Zadehrahmani, Pamela Anna Burger, V. Landi, Mohammad Silawi, Afsaneh Taghipour Sheshdeh, Mohammad Ali Faghihi
Software Mentions: 6
Published: over 5 years ago

10.1186/s13072-018-0250-9

Chromatin changes in Anopheles gambiae induced by Plasmodium falciparum infection
Cited by: 29
Author(s): José Luis Ruiz, Rakiswendé Serge Yerbanga, Thierry Léfèvre, Jean-Bosco Ouédraogo, Victor G. Corcés, Elena Gómez-Díaz
Software Mentions: 6
Published: over 7 years ago

10.1038/s41396-020-00736-6

The saccharibacterium TM7x elicits differential responses across its host range
Cited by: 26
Author(s): Daniel R. Utter, Xuesong He, Colleen M. Cavanaugh, Jeffrey S. McLean, Batbileg Bor
Software Mentions: 6
Published: almost 6 years ago

10.1111/1462-2920.14516

Differential ratio amplicons (<i>R</i>_amp) for the evaluation of RNA integrity extracted from complex environmental samples
Cited by: 12
Author(s): Fabien Cholet, Umer Zeeshan Ijaz, Cindy J. Smith
Software Mentions: 6
Published: over 7 years ago

10.1186/s13059-019-1837-6

DeepImpute: an accurate, fast, and scalable deep neural network method to impute single-cell RNA-seq data
Cited by: 162
Author(s): Cédric Arisdakessian, Olivier Poirion, Breck Yunits, Xun Zhu, Lana X. Garmire
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-019-39576-6

Metagenome-assembled genomes provide new insight into the microbial diversity of two thermal pools in Kamchatka, Russia
Cited by: 57
Author(s): Laetitia G. E. Wilkins, Cassandra L. Ettinger, Guillaume Jospin, Jonathan A. Eisen
Software Mentions: 6
Published: over 7 years ago

10.7717/peerj.7969

Machine learning analysis to identify the association between risk factors and onset of nosocomial diarrhea: a retrospective cohort study
Cited by: 4
Author(s): Ken Kurisu, Kazuhiro Yoshiuchi, Kei Ogino, Toshimi Oda
Software Mentions: 6
Published: over 6 years ago

10.3390/insects11040217

Host Plants Influence the Symbiont Diversity of Eriosomatinae (Hemiptera: Aphididae)
Cited by: 14
Author(s): Tingting Xu, Li‐Yun Jiang, Jing Chen, Ge‐Xia Qiao
Software Mentions: 6
Published: over 6 years ago

10.7717/peerj.3411

Taxonomic richness and abundance of cryptic peracarid crustaceans in the Puerto Morelos Reef National Park, Mexico
Cited by: 9
Author(s): Luz Verónica Monroy-Velázquez, Rosa E. Rodríguez-Martínez, Fernando Álvarez
Software Mentions: 6
Published: about 9 years ago

10.1186/s13071-020-04386-7

Low temperature tolerance of three Aedes albopictus strains (Diptera: Culicidae) under constant and fluctuating temperature scenarios
Cited by: 14
Author(s): Lisa Tippelt, Doreen Werner, Helge Kampen
Software Mentions: 6
Published: over 5 years ago

10.3390/genes11060599

Genome-Wide Diversity, Population Structure and Demographic History of Dromedaries in the Central Desert of Iran
Cited by: 5
Author(s): Morteza Bitaraf Sani, Javad Zare Harofte, Ahmad Bitaraf, Saeid Esmaeilkhanian, Mohammad Hossein Banabazi, Nader Salim, Abbas Teimoori, Ali Naderi, Mohammad Ali Faghihi, Pamela A. Burger, Mohammad Silawi, Afsaneh Taghipour Sheshdeh
Software Mentions: 6
Published: about 6 years ago

10.3389/fpls.2020.569811

All the Colors of the Rainbow: Diversification of Flower Color and Intraspecific Color Variation in the Genus Iris
Cited by: 13
Author(s): Katarzyna Roguz, Megan Gallagher, Esther Senden, Yamit Bar-Lev, Merav Lebel, Roni Heliczer, Yuval Sapir
Software Mentions: 6
Published: over 5 years ago

10.1186/s13059-019-1908-8

Host-associated microbiomes are predicted by immune system complexity and climate
Cited by: 45
Author(s): Douglas C. Woodhams, Molly C. Bletz, C. Guilherme Becker, Hayden A. Bender, Daniel Buitrago-Rosas, Hannah Diebboll, Roger Huynh, Patrick J. Kearns, Jordan G. Kueneman, Emmi Kurosawa, Brandon LaBumbard, Casandra Lyons, Kerry McNally, Klaus Schliep, Nachiket Shankar, Amanda G. Tokash-Peters, Miguel Vences, Ross Whetstone
Software Mentions: 6
Published: over 6 years ago

10.1186/s12885-021-08431-1

Five metastasis-related mRNAs signature predicting the survival of patients with liver hepatocellular carcinoma
Cited by: 7
Author(s): Chao Chen, Yan Qun Liu, Shi Qiu, Ya Li, Ning Jun Yu, Kang Liu, Li Ming Zhong
Software Mentions: 6
Published: about 5 years ago

10.1186/s12859-020-03891-x

Integrative approach for detecting membrane proteins
Cited by: 6
Author(s): Munira Alballa, Gregory Butler
Software Mentions: 6
Published: over 5 years ago

10.1038/s42003-021-02397-3

Three-dimensional CRISPR screening reveals epigenetic interaction with anti-angiogenic therapy
Cited by: 4
Author(s): Michael Y. He, Michael M. Halford, Ruofei Liu, James P Roy, Zoe L. Grant, Leigh Coultas, Niko Thio, Omer Gilan, Yih Chih Chan, Mark A. Dawson, Marc G. Achen, Steven A. Stacker
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-018-37106-4

Carnivoran hunting style and phylogeny reflected in bony labyrinth morphometry
Cited by: 14
Author(s): Julia A. Schwab, Jürgen Kriwet, Gerhard Weber, Cathrin Pfaff
Software Mentions: 6
Published: over 7 years ago

10.1186/s40168-017-0314-2

A comprehensive evaluation of the sl1p pipeline for 16S rRNA gene sequencing analysis
Cited by: 61
Author(s): Fiona Whelan, Michael G. Surette
Software Mentions: 6
Published: almost 9 years ago

10.1038/s42003-020-0863-y

A miRNA-based diagnostic model predicts resectable lung cancer in humans with high accuracy
Cited by: 62
Author(s): Keisuke Asakura, Tsukasa Kadota, Juntaro Matsuzaki, Yukihiro Yoshida, Yusuke Yamamoto, Kazuo Nakagawa, Satoko Takizawa, Yasumichi Aoki, Eiji Nakamura, Junichiro Miura, Hiromi Sanada, Ken Kato, Shun Watanabe, Takahiro Ochiya
Software Mentions: 6
Published: over 6 years ago

10.3389/fmicb.2015.01013

Evolutionary history influences the salinity preference of bacterial taxa in wetland soils
Cited by: 65
Author(s): Ember M. Morrissey, Rima B. Franklin
Software Mentions: 6
Published: almost 11 years ago

10.7554/eLife.11491

Localized JNK signaling regulates organ size during development
Cited by: 37
Author(s): Helen Rankin Willsey, Xiaoyan Zheng, José Carlos Pastor-Pareja, A. Jeremy Willsey, Philip A. Beachy, Tian Xu
Software Mentions: 6
Published: over 10 years ago

10.3389/fmicb.2021.673969

Characterization of the Genitourinary Microbiome of 1,165 Middle-Aged and Elderly Healthy Individuals
Cited by: 2
Author(s): Junjie Qin, Shi Xiao-li, Junming Xu, Simin Yuan, Bo Zheng, Enpu Zhang, Guangtao Huang, Li Guo, Ganggang Jiang, Shan Gao, Tian Cheng, Ruochun Guo, Zhicong Fu, Qingru Huang, Rentao Yang, Wenyong Zhang, Shenghui Li, Song Wu
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0148016

Diversity and Biogeography of Bathyal and Abyssal Seafloor Bacteria
Cited by: 99
Author(s): Christina Bienhold, Lucie Zinger, Antje Boetius, Alban Ramette
Software Mentions: 6
Published: over 10 years ago

10.1002/ece3.2150

Plant regeneration from seeds responds to phylogenetic relatedness and local adaptation in Mediterranean <i>Romulea</i> (Iridaceae) species
Cited by: 31
Author(s): Angelino Carta, Sarah Hanson, Jonas V. Müller
Software Mentions: 6
Published: about 10 years ago

10.1002/ece3.7215

Beta diversity of aquatic macroinvertebrate assemblages associated with leaf patches in neotropical montane streams
Cited by: 10
Author(s): Marcos Callisto, Marden S. Linares, Walace P. Kiffer, Robert M. Hughes, Marcelo S. Moretti, Diego Rodrigues Macedo, Ricardo Solar
Software Mentions: 6
Published: over 5 years ago

10.3389/fpls.2021.656783

Evolution of Bird and Insect Flower Traits in Fritillaria L. (Liliaceae)
Cited by: 5
Author(s): Katarzyna Roguz, Laurence Hill, Agata Roguz, Marcin Zych
Software Mentions: 6
Published: over 5 years ago

10.3389/fphys.2021.622987

Olfactory Dysfunction in Frontline Health Care Professionals During COVID-19 Pandemic in Brazil
Cited by: 7
Author(s): Mariana Ferreira Sbrana, Marco Aurélio Fornazieri, Alexandre Bruni‐Cardoso, Vivian Iida Avelino‐Silva, Deborah Schechtman, Richard Louis Voegels, Bettina Malnic, Isaías Glezer, Fábio de Rezende Pinna
Software Mentions: 6
Published: over 5 years ago

10.1186/s13613-017-0263-8

Diagnostic accuracy of quantitative neuromuscular ultrasound for the diagnosis of intensive care unit-acquired weakness: a cross-sectional observational study
Cited by: 49
Author(s): Esther Witteveen, Juultje Sommers, Luuk Wieske, Jonne Doorduin, Nens van Alfen, Marcus J. Schultz, Ivo N. van Schaik, Janneke Horn, Camiel Verhamme
Software Mentions: 6
Published: over 9 years ago

10.1038/s41408-021-00434-2

Polymorphisms in CXCR3 ligands predict early CXCL9 recovery and severe chronic GVHD
Cited by: 5
Author(s): Hao Dai, Sivaramakrishna P Rachakonda, Olaf Penack, Igor Wolfgang Blau, Olga Blau, Aleksandar Radujkovic, Carsten Müller‐Tidow, Peter Dreger, Rajiv Kumar, Thomas Luft
Software Mentions: 6
Published: over 5 years ago

10.1186/s12882-019-1494-8

Use of estimated glomerular filtration rate to predict incident chronic kidney disease in patients at risk of cardiovascular disease: a retrospective study
Cited by: 8
Author(s): Saif Al-Shamsi, Abderrahim Oulhaj, Dybesh Regmi, Romona Devi Govender
Software Mentions: 6
Published: almost 7 years ago

10.3390/cells8060517

Fecal Microbiota Transplantation Controls Murine Chronic Intestinal Inflammation by Modulating Immune Cell Functions and Gut Microbiota Composition
Cited by: 46
Author(s): Claudia Burrello, Maria Rita Giuffrè, Angeli Dominique Macandog, Angélica Díaz‐Basabe, Fulvia Milena Cribiù, Gianluca Lopez, Francesca Borgo, Luigi Nezi, Flavio Caprioli, Maurizio Vecchi, Federica Facciotti
Software Mentions: 6
Published: about 7 years ago

10.3390/ani11092597

Effect of a Low-Methane Diet on Performance and Microbiome in Lactating Dairy Cows Accounting for Individual Pre-Trial Methane Emissions
Cited by: 3
Author(s): Juana Catarina Cariri Chagas, Mohammad Ramin, Ruth Gómez Expósito, Hauke Smidt, S.J. Krizsan
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12864-019-5933-5

Uncovering the molecular signature underlying the light intensity-dependent root development in Arabidopsis thaliana
Cited by: 13
Author(s): Sony Kumari, Sneha Yadav, Debadutta Patra, Sharmila Singh, Ananda K. Sarkar, Kishore C. S. Panigrahi
Software Mentions: 6
Published: almost 7 years ago

10.1186/s12859-016-1083-9

flowVS: channel-specific variance stabilization in flow cytometry
Cited by: 15
Author(s): Ariful Azad, Bartek Rajwa, Alex Pothen
Software Mentions: 6
Published: almost 10 years ago

10.1186/s13613-019-0515-x

Pulmonary infections prime the development of subsequent ICU-acquired pneumonia in septic shock
Cited by: 7
Author(s): Jean-François Llitjos, Aïcha Gassama, Julien Charpentier, Jérôme Lambert, Charles de Roquetaillade, Alain Cariou, Jean‐Daniel Chiche, Jean‐Paul Mira, Matthieu Jamme, Frédéric Pène
Software Mentions: 6
Published: over 7 years ago

10.1128/mBio.03162-20

Streptococcus pyogenes Is Associated with Idiopathic Cutaneous Ulcers in Children on a Yaws-Endemic Island
Cited by: 5
Author(s): Brad Griesenauer, Camila González-Beiras, Katherine R. Fortney, Huaiying Lin, Xiang Gao, Charmie Godornes, David E. Nelson, Barry P. Katz, Sheila A. Lukehart, Oriol Mitjà, Qunfeng Dong, Stanley M. Spinola
Software Mentions: 6
Published: over 5 years ago

10.1007/s00442-017-3895-3

Long-term deer exclosure alters soil properties, plant traits, understory plant community and insect herbivory, but not the functional relationships among them
Cited by: 16
Author(s): Jörg G. Stephan, Fereshteh Pourazari, Kristina Tattersdill, Takuya Kobayashi, Keita Nishizawa, Jonathan R. De Long
Software Mentions: 6
Published: about 9 years ago

10.1186/s13071-015-0860-z

Parasites and vectors of malaria on Rusinga Island, Western Kenya
Cited by: 24
Author(s): Evelyn A Olanga, Lawrence Okombo, LW Irungu, Wolfgang R Mukabana
Software Mentions: 6
Published: about 11 years ago

10.7717/peerj.5467

Unveiling community patterns and trophic niches of tropical and temperate ants using an integrative framework of field data, stable isotopes and fatty acids
Cited by: 17
Author(s): Félix Baumgarten Rosumek, Nico Blüthgen, Adrian Brückner, Florian Menzel, Gerhard Gebauer, Michael Heethoff
Software Mentions: 6
Published: almost 8 years ago

10.1371/journal.pone.0152454

Toward Objective, Morphology-Based Taxonomy: A Case Study on the Malagasy Nesomyrmex sikorai Species Group (Hymenoptera: Formicidae)
Cited by: 15
Author(s): Sándor Csősz, Brian L. Fisher
Software Mentions: 6
Published: about 10 years ago

10.3390/ijms22136641

Transcriptomic and Metabolic Profiling of High-Temperature Treated Storage Roots Reveals the Mechanism of Saccharification in Sweetpotato (Ipomoea batatas (L.) Lam.)
Cited by: 5
Author(s): Chen Li, Meng Kou, Mohamed Hamed Arisha, Wei Tang, Meng Ma, Hui Yan, Xin Wang, Xiaoxiao Wang, Yungang Zhang, Yaju Liu, Runfei Gao, Qiang Li
Software Mentions: 6
Published: about 5 years ago

10.1016/j.dib.2017.11.080

Data on the impact of subclinical hypothyroidism on clinical outcomes following percutaneous coronary intervention
Cited by: 1
Author(s): Yong-Gu Lee, Young‐Hyo Lim, Junho Shin, Jin‐Kyu Park, Jinho Shin
Software Mentions: 6
Published: over 8 years ago

10.3389/fgene.2021.653474

Identifying ceRNA Networks Associated With the Susceptibility and Persistence of Atrial Fibrillation Through Weighted Gene Co-Expression Network Analysis
Cited by: 6
Author(s): Yaozhong Liu, Na Liu, Fan Bai, Qiming Liu
Software Mentions: 6
Published: about 5 years ago

10.7554/eLife.37078

Arabidopsis RNA processing factor SERRATE regulates the transcription of intronless genes
Cited by: 31
Author(s): Corinna Speth, Emese Szabó, Cláudia Martinho, Silvio Collani, Sven zur Oven-Krockhaus, Sandra Richter, Irina Droste-Borel, Boris Maček, York‐Dieter Stierhof, Markus Schmid, Chang Liu, Sascha Laubinger
Software Mentions: 6
Published: almost 8 years ago

10.1128/mSystems.01296-20

Harnessing Machine Learning To Unravel Protein Degradation in Escherichia coli
Cited by: 16
Author(s): Natan Nagar, Noa Ecker, Gil Loewenthal, Oren Avram, Daniella Ben-Meir, Dvora Biran, Eliora Z. Ron, Tal Pupko
Software Mentions: 6
Published: over 5 years ago

10.3390/jpm10040210

Association of UBE3C Variants with Reduced Kidney Function in Patients with Diabetic Kidney Disease
Cited by: 3
Author(s): Ying Chun Chen, Mei Yi Wu, Zhi Yu, Wan Hsuan Chou, Yi Ting Lai, Chih-Chin Kao, Imaniar Noor Faridah, Mai Szu Wu, Wei Chiao Chang
Software Mentions: 6
Published: over 5 years ago

10.1128/mSystems.00269-18

Calour: an Interactive, Microbe-Centric Analysis Tool
Cited by: 24
Author(s): Zhenjiang Zech Xu, Amir Almasi‐Hashiani, Jon G. Sanders, Quanyin Zhu, James T. Morton, Molly C. Bletz, Anupriya Tripathi, Shi Huang, Daniel McDonald, Lingjing Jiang, Rob Knight
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pntd.0008616

Predicting the environmental suitability and population at risk of podoconiosis in Africa
Cited by: 8
Author(s): Kebede Deribe, Hamish Simpson, Rachel L. Pullan, Mbonigaba Jean Bosco, Samuel Wanji, Nicole Davis Weaver, Christopher J L Murray, Melanie Newport, Simon I. Hay, Gail Davey, Jorge Cano
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12911-017-0518-1

Word2Vec inversion and traditional text classifiers for phenotyping lupus
Cited by: 49
Author(s): Clayton A. Turner, Alexander Jacobs, Cassios K. Marques, Jim C. Oates, Diane L. Kamen, Paul E. Anderson, Jihad S. Obeid
Software Mentions: 6
Published: almost 9 years ago

10.1371/journal.pone.0212866

Dynamic changes in lung responses after single and repeated exposures to cigarette smoke in mice
Cited by: 10
Author(s): Michelle Engle, Justine N. Monk, Corey M. Jania, Jessica R. Martin, John C. Gomez, Hong Dang, Joel S. Parker, Claire M. Doerschuk
Software Mentions: 6
Published: over 7 years ago

10.1186/s12915-018-0547-y

Species comparison of liver proteomes reveals links to naked mole-rat longevity and human aging
Cited by: 52
Author(s): Ivonne Heinze, Martin Bens, Enrico Calzia, Susanne Holtze, Oleksandr Dakhovnik, Arne Sahm, Joanna Kirkpatrick, Karol Szafranski, Natalie Romanov, Sai Nagender Sama, Kerstin Hölzer, Stephan Singer, Maria A. Ermolaeva, Matthias Platzer, Thomas B. Hildebrandt, Alessandro Ori
Software Mentions: 6
Published: almost 8 years ago

10.1093/gigascience/giaa131

A methodological approach to correlate tumor heterogeneity with drug distribution profile in mass spectrometry imaging data
Cited by: 5
Author(s): Mridula Prasad, G.J. Postma, Pietro Franceschi, Lavinia Morosi, Silvia Giordano, Francesca Falcetta, Raffaella Giavazzi, Enrico Davoli, L.M.C. Buydens, Jeroen J. Jansen
Software Mentions: 6
Published: over 5 years ago

10.3389/fpls.2020.00759

The Importance of Incorporating Landscape Change for Predictions of Climate-Induced Plant Phenological Shifts
Cited by: 0
Author(s): Chelsea Chisholm, Michael Becker, W. H. Pollard
Software Mentions: 6
Published: about 6 years ago

10.1186/s13062-017-0193-2

On the global CRISPR array behavior in class I systems
Cited by: 11
Author(s): Alice Toms, Rodolphe Barrangou
Software Mentions: 6
Published: almost 9 years ago

10.1371/journal.pone.0223147

Gibberellic acid in Citrus spp. flowering and fruiting: A systematic review
Cited by: 22
Author(s): Alfonso Garmendia, Roberto Beltrán, Carlos Zornoza, Francisco J. García‐Breijo, José Luis Peset Reig, Hugo Merlé
Software Mentions: 6
Published: almost 7 years ago

10.1038/srep35671

RNA sequencing analysis of human podocytes reveals glucocorticoid regulated gene networks targeting non-immune pathways
Cited by: 22
Author(s): Lulu Jiang, Charles Hindmarch, Mark F. Rogers, Colin Campbell, Christy Waterfall, Jane A. Coghill, Peter W. Mathieson, Gavin I. Welsh
Software Mentions: 6
Published: over 9 years ago

10.7717/peerj.1137

Assessing the reproducibility of discriminant function analyses
Cited by: 9
Author(s): Rose L. Andrew, Arianne Albert, Sébastien Renaut, Diana J. Rennison, Dan G. Bock, Tim Vines
Software Mentions: 6
Published: almost 11 years ago

10.1186/s12859-018-2450-5

Optimum contribution selection for animal breeding and conservation: the R package optiSel
Cited by: 44
Author(s): Robin Wellmann
Software Mentions: 6
Published: over 7 years ago

10.3389/fnins.2018.00368

From ERPs to MVPA Using the Amsterdam Decoding and Modeling Toolbox (ADAM)
Cited by: 94
Author(s): Johannes J. Fahrenfort, Joram van Driel, Simon van Gaal, Christian N. L. Olivers
Software Mentions: 6
Published: about 8 years ago

10.1038/gim.2015.156

VisCap: inference and visualization of germ-line copy-number variants from targeted clinical sequencing data
Cited by: 58
Author(s): Trevor J. Pugh, Sami S. Amr, Mark J. Bowser, Sivakumar Gowrisankar, Elizabeth Hynes, Lisa Mahanta, Heidi L. Rehm, Birgit Funke, Matthew S. Lebo
Software Mentions: 6
Published: about 10 years ago

10.1038/s41598-020-80533-5

Structural aspects of lesional and non-lesional skin microbiota reveal key community changes in leprosy patients from India
Cited by: 5
Author(s): Nitin Bayal, Sunil Nagpal, Mohammed Monzoorul Haque, Milind S. Patole, Yogesh S. Shouche, Shekhar C. Mande, Sharmila S. Mande
Software Mentions: 6
Published: over 5 years ago

10.1186/s13148-018-0463-6

Epigenetic regulation of placental gene expression in transcriptional subtypes of preeclampsia
Cited by: 60
Author(s): Katherine Leavey, Samantha L. Wilson, Shannon Bainbridge, Wendy P. Robinson, Brian Cox
Software Mentions: 6
Published: over 8 years ago

10.3389/fpls.2020.611877

Flower Production, Headspace Volatiles, Pollen Nutrients, and Florivory in Tanacetum vulgare Chemotypes
Cited by: 20
Author(s): Elisabeth J. Eilers, Sandra Kleine, Silvia Eckert, Simon Waldherr, Caroline Müller
Software Mentions: 6
Published: over 5 years ago

10.1186/1471-2105-15-170

Ensemble analyses improve signatures of tumour hypoxia and reveal inter-platform differences
Cited by: 24
Author(s): Natalie S. Fox, Maud H.W. Starmans, Syed Haider, Philippe Lambin, Paul C. Boutros
Software Mentions: 6
Published: about 12 years ago

10.3389/fphys.2018.01778

Identification of Crucial Genes and Pathways in Human Arrhythmogenic Right Ventricular Cardiomyopathy by Coexpression Analysis
Cited by: 11
Author(s): Peipei Chen, Bo Long, Yuanfu Xu, Wei Wu, Shuyang Zhang
Software Mentions: 6
Published: over 7 years ago

10.1186/s12866-020-01806-7

Co-occurrence pattern and function prediction of bacterial community in Karst cave
Cited by: 23
Author(s): Yiyi Dong, Jie Gao, Qingshan Wu, Yilang Ai, Yu Feng Huang, Wenzhang Wei, Shiyu Sun, Qingbei Weng
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0256457

Colombia’s bioregions as a source of useful plants
Cited by: 3
Author(s): Nadia Bystriakova, Carolina Tovar, Alexandre K. Monro, Justin Moat, Pablo Hendrigo, Julia Carretero, Germán Torres-Morales, Mauricio Diazgranados
Software Mentions: 6
Published: almost 5 years ago

10.3390/genes11070802

Convergence of Prognostic Gene Signatures Suggests Underlying Mechanisms of Human Prostate Cancer Progression
Cited by: 6
Author(s): Bogdan A. Luca, Vincent Moulton, Christopher Ellis, Shea P. Connell, Daniel Brewer, Christopher S. Cooper
Software Mentions: 6
Published: almost 6 years ago

10.1186/s40168-021-01087-w

Microbiomes attached to fresh perennial ryegrass are temporally resilient and adapt to changing ecological niches
Cited by: 5
Author(s): Sharon Huws, Joan E. Edwards, Wen Lin, Francesco Rubino, Mark Alston, David Swarbreck, Shabhonam Caim, Pauline Rees Stevens, Justin A. Pachebat, Mi Young Won, Linda Oyama, Christopher J. Creevey, Alison H. Kingston‐Smith
Software Mentions: 6
Published: about 5 years ago

10.7554/eLife.57804

External location of touch is constructed post-hoc based on limb choice
Cited by: 16
Author(s): Femke Maij, Christian Seegelke, W. Pieter Medendorp, Tobias Heed
Software Mentions: 6
Published: almost 6 years ago

10.1186/gb-2005-6-9-r76

Cited by: 122
Author(s): Stephen Henderson, David B. Guiliano, Nadège Presneau, Sean R. McLean, Richard Frow, Sonja Vujovic, John Anderson, Neil J. Sebire, Jeremy Whelan, Nick Athanasou, Adrienne M. Flanagan, Chris Boshoff
Software Mentions: 6
Published: over 21 years ago

10.3389/fcell.2021.562908

FOntCell: Fusion of Ontologies of Cells
Cited by: 0
Author(s): Javier Cabau-Laporta, Alex M. Ascensión, Mikel Arrospide-Elgarresta, Daniela Gerovska, Marcos J. Araúzo‐Bravo
Software Mentions: 6
Published: over 5 years ago

10.1186/1471-2105-16-S6-S1

Sparse conditional logistic regression for analyzing large-scale matched data from epidemiological studies: a simple algorithm
Cited by: 16
Author(s): Marta Avalos, Hélène Pouyes, Yves Grandvalet, Ludivine Orriols, Emmanuel Lagarde
Software Mentions: 6
Published: about 11 years ago

10.3389/fphar.2016.00142

Comparative Transcriptome Analysis Identifies CCDC80 as a Novel Gene Associated with Pulmonary Arterial Hypertension
Cited by: 22
Author(s): Shota Sasagawa, Yuhei Nishimura, Hirofumi Sawada, Eric Erquan Zhang, Shiko Okabe, Soichiro Murakami, Yoshifumi Ashikawa, Mizuki Yuge, Koki Kawaguchi, Reiko Kawase, Yoshihide Mitani, Kazuo Maruyama, Toshio Tanaka
Software Mentions: 6
Published: about 10 years ago

10.1186/s12870-014-0315-2

The chickpea genomic web resource: visualization and analysis of the desi-type Cicer arietinum nuclear genome for comparative exploration of legumes
Cited by: 8
Author(s): Gopal Misra, Piyush Priya, Nitesh Bandhiwal, Neha Bareja, Mukesh Jain, Sabhyata Bhatia, Debasis Chattopadhyay, Akhilesh K. Tyagi, Gitanjali Yadav
Software Mentions: 6
Published: over 11 years ago

10.3389/fonc.2021.639085

Risk Models for Advanced Melanoma Patients Under Anti-PD-1 Monotherapy—Ad hoc Analyses of Pooled Data From Two Clinical Trials
Cited by: 5
Author(s): Xue Bai, Jie Dai, Caili Li, Chuanliang Cui, Lili Mao, Xiaoting Wei, Xinan Sheng, Zhihong Chen, Xieqiao Yan, Bixia Tang, Bin Lian, Xuan Wang, Li Zhou, Siming Li, Yan Kong, Zhonghui Qi, Huayan Xu, Rong Duan, Jun Guo, Lu Si
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0221487

AdequacyModel: An R package for probability distributions and general purpose optimization
Cited by: 36
Author(s): Pedro Rafael Diniz Marinho, Rodrigo B. Silva, Marcelo Bourguignon, Gauss M. Cordeiro, Saralees Nadarajah
Software Mentions: 6
Published: almost 7 years ago

10.1186/s40168-018-0507-3

Evaluation of bias induced by viral enrichment and random amplification protocols in metagenomic surveys of saliva DNA viruses
Cited by: 64
Author(s): Marcos Parras-Moltó, Ana Rodríguez-Galet, Patricia Suárez-Rodríguez, Alberto López-Bueno
Software Mentions: 6
Published: about 8 years ago

10.1186/s40168-020-00954-2

Bacterial community assemblages in classroom floor dust of 50 public schools in a large city: characterization using 16S rRNA sequences and associations with environmental factors
Cited by: 10
Author(s): Ju‐Hyeong Park, Angela R. Lemons, Jerry Roseman, Brett J. Green, Jean M. Cox‐Ganser
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0137340

Dispersal and Diving Adjustments of the Green Turtle Chelonia mydas in Response to Dynamic Environmental Conditions during Post-Nesting Migration
Cited by: 21
Author(s): Philippine Chambault, David Pinaud, Vincent Vantrepotte, Laurent Kelle, Mathieu Entraygues, Christophe Guinet, Rachel Berzins, Karin Bilo, Philippe Gaspar, Benoı̂t de Thoisy, Yvon Le Maho, Damien Chevallier
Software Mentions: 6
Published: almost 11 years ago

10.1186/s13229-019-0263-7

A multifaceted approach for analyzing complex phenotypic data in rodent models of autism
Cited by: 5
Author(s): Ishita Das, Marcel A. Estévez, Anjali A. Sarkar, Sharmila Banerjee-Basu
Software Mentions: 6
Published: over 7 years ago

10.1186/s13104-017-2540-x

The effect of mislabeled phenotypic status on the identification of mutation-carriers from SNP genotypes in dairy cattle
Cited by: 6
Author(s): Stefano Biffani, Hubert Pausch, Hermann Schwarzenbacher, Filippo Biscarini
Software Mentions: 6
Published: about 9 years ago

10.1007/s41114-017-0010-3

Cosmology and fundamental physics with the Euclid satellite
Cited by: 600
Author(s): Luca Amendola, Stephen Appleby, Anastasios Avgoustidis, David Bacon, Tessa Baker, Marco Baldi, N. Bartolo, Alain Blanchard, Camille Bonvin, S. Borgani, E. Branchini, Clare Burrage, Stefano Camera, C. Carbone, Luciano Casarini, Mark Cropper, Claudia de Rham, J. P. Dietrich, C. Di Porto, Ruth Durrer, A. Ealet, Pedro G. Ferreira, F. Finelli⋆, J. García-Bellido, T. Giannantonio, L. Guzzo, Alan Heavens, Lavinia Heisenberg, Catherine Heymans, Henk Hoekstra, Lukas Hollenstein, Rory Holmes, Zhiqi Hwang, K. Jahnke, Thomas D. Kitching, Tomi S. Koivisto, M. Kunz, G. La Vacca, Eric V. Linder, M. March, Valerio Marra, C. J. A. P. Martins, Elisabetta Majerotto, K. Markovic, David J. E. Marsh, F. Marulli, Richard Massey, Y. Mellier, Francesco Montanari, David F. Mota, Nelson J. Nunes, Will J. Percival, V. Pettorino, Cristiano Porciani, Claudia Quercellini, Justin I. Read, Massimiliano Rinaldi, Domenico Sapone, Ignacy Sawicki, R. Scaramella, Constantinos Skordis, Fergus Simpson, Andy Taylor, Shaun A. Thomas, Roberto Trotta, Licia Verde, Filippo Vernizzi, Adrian Vollmer, Yun Wang, J. Weller, Tom Złośnik
Software Mentions: 6
Published: about 8 years ago

10.1186/s40168-019-0639-0

Rare gut microbiota associated with breeding success, hormone metabolites and ovarian cycle phase in the critically endangered eastern black rhino
Cited by: 61
Author(s): Rachael E. Antwis, Katie L. Edwards, Bryony Unwin, Susan L. Walker, Susanne Shultz
Software Mentions: 6
Published: over 7 years ago

10.3390/s21020618

Coupling Analytical Models and Machine Learning Methods for Fast and Reliable Resolution of Effects in Multifrequency Eddy-Current Sensors
Cited by: 6
Author(s): Sergey Kucheryavskiy, А. В. Егоров, V. V. Polyakov
Software Mentions: 6
Published: over 5 years ago

10.1128/AEM.02111-18

Resistance Gene Carriage Predicts Growth of Natural and Clinical Escherichia coli Isolates in the Absence of Antibiotics
Cited by: 7
Author(s): Richard C. Allen, Daniel C Angst, Alex R. Hall
Software Mentions: 6
Published: over 7 years ago