10.1371/journal.pone.0174623

Words from spontaneous conversational speech can be recognized with human-like accuracy by an error-driven learning algorithm that discriminates between meanings straight from smart acoustic features, bypassing the phoneme as recognition unit
Cited by: 57
Author(s): Denis Arnold, Fabian Tomaschek, Konstantin Sering, Florence Lopez, R. Harald Baayen
Software Mentions: 6
Published: about 9 years ago

10.1016/j.rse.2017.07.013

Extensive validation of CM SAF surface radiation products over Europe
Cited by: 73
Author(s): Rubén Urraca, Ana Gracia-Amillo, Elena Koubli, Thomas Huld, Jörg Trentmann, Aku Riihelä, Anders V. Lindfors, Diane Palmer, Ralph Gottschalg, F. Antoñanzas-Torres
Software Mentions: 6
Published: almost 9 years ago

10.3389/fmicb.2018.00294

Drought Legacy Effects on the Composition of Soil Fungal and Prokaryote Communities
Cited by: 108
Author(s): Annelein Meisner, Samuel Jacquiod, L. Basten Snoek, Freddy C. ten Hooven, Wim H. van der Putten
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pone.0148203

A Phylogenomic Approach Based on PCR Target Enrichment and High Throughput Sequencing: Resolving the Diversity within the South American Species of Bartsia L. (Orobanchaceae)
Cited by: 67
Author(s): Simon Uribe‐Convers, Matthew L. Settles, David C. Tank
Software Mentions: 6
Published: over 10 years ago

10.3390/genes10070514

Transcriptional Analysis of the Early Ripening of ‘Kyoho’ Grape in Response to the Treatment of Riboflavin
Cited by: 9
Author(s): Zhenguang Wang, Lili Guo, Xiao-Ru Ji, Yi‐He Yu, Guohai Zhang, Da‐Long Guo
Software Mentions: 6
Published: about 7 years ago

10.3390/v13020169

The Ecology of Nipah Virus in Bangladesh: A Nexus of Land-Use Change and Opportunistic Feeding Behavior in Bats
Cited by: 39
Author(s): Clifton McKee, Ariful Islam, Stephen P. Luby, Henrik Salje, Peter J. Hudson, Raina K. Plowright, Emily S. Gurley
Software Mentions: 6
Published: over 5 years ago

10.7717/peerj.11489

<i>covid19.Explorer</i>: a web application and R package to explore United States COVID-19 data
Cited by: 5
Author(s): Liam J. Revell
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-020-67842-5

Molecular dissection of CRC primary tumors and their matched liver metastases reveals critical role of immune microenvironment, EMT and angiogenesis in cancer metastasis
Cited by: 18
Author(s): Jiangang Liu, Yong Beom Cho, Hye Kyung Hong, Song Wu, Philip J. Ebert, Steven M. Bray, Suei Nee Wong, Jason C. Ting, John N. Calley, Catherine F. Whittington, Shripad V. Bhagwat, Christoph Reinhard, Robert A. Wild, Do‐Hyun Nam, Amit Aggarwal, Woo Yong Lee, Sheng-Bin Peng
Software Mentions: 6
Published: about 6 years ago

10.1111/1755-0998.12676

<scp>treespace</scp> : Statistical exploration of landscapes of phylogenetic trees
Cited by: 131
Author(s): Thibaut Jombart, Michaela Kendall, Jacob Almagro-Garcia, Caroline Colijn
Software Mentions: 6
Published: about 9 years ago

10.1371/journal.pcbi.1009197

Multidimensional analysis of immune responses identified biomarkers of recent Mycobacterium tuberculosis infection
Cited by: 1
Author(s): Tessa Lloyd, Pia Steigler, Cheleka A M Mpande, Virginie Rozot, Boitumelo Mosito, Constance Schreuder, Timothy D. Reid, Mark Hatherill, Thomas J. Scriba, Francesca Little, Elisa Nemes
Software Mentions: 6
Published: almost 5 years ago

10.3390/s20205768

ISOBlue HD: An Open-Source Platform for Collecting Context-Rich Agricultural Machinery Datasets
Cited by: 0
Author(s): Yang Wang, He Lin, James V. Krogmeier, Amy R. Reibman, Dennis R. Buckmaster
Software Mentions: 6
Published: over 5 years ago

10.1186/s12870-017-1070-y

Plant-RRBS, a bisulfite and next-generation sequencing-based methylome profiling method enriching for coverage of cytosine positions
Cited by: 12
Author(s): Martin Schmidt, Michiel Van Bel, Magdalena Wołoszyńska, Bram Slabbinck, Cindy Martens, Marc De Block, Frederik Coppens, Mieke Van Lijsebettens
Software Mentions: 6
Published: about 9 years ago

10.1186/s12911-020-01149-3

GUIP1: a R package for dose escalation strategies in phase I cancer clinical trials
Cited by: 4
Author(s): D. Dinart, Julien Fraisse, Diego Tosi, Audrey Mauguen, Célia Touraine, Sophie Gourgou, Marie Cécile Le Deley, C. Bellera, Caroline Mollévi
Software Mentions: 6
Published: about 6 years ago

10.1002/ece3.5512

Can plant traits predict seed dispersal probability via red deer guts, fur, and hooves?
Cited by: 8
Author(s): Tanja K. Petersen, Hans Henrik Bruun
Software Mentions: 6
Published: almost 7 years ago

10.5808/gi.20074

Elucidating molecular mechanisms of acquired resistance to BRAF inhibitors in melanoma using a microfluidic device and deep sequencing
Cited by: 2
Author(s): Jiyeon Han, Yeonjoo Jung, Yukyung Jun, Sungsu Park, Sanghyuk Lee
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.ppat.1007518

Comprehensive profiling of translation initiation in influenza virus infected cells
Cited by: 22
Author(s): Heather M. Machkovech, Jesse D. Bloom, Arvind R. Subramaniam
Software Mentions: 6
Published: over 7 years ago

10.7717/peerj.1029

Compact graphical representation of phylogenetic data and metadata with GraPhlAn
Cited by: 584
Author(s): Francesco Asnicar, George Weingart, Timothy L. Tickle, Curtis Huttenhower, Nicola Segata
Software Mentions: 6
Published: about 11 years ago

10.1093/bioinformatics/bty646

Automated workflow composition in mass spectrometry-based proteomics
Cited by: 37
Author(s): Magnus Palmblad, Anna‐Lena Lamprecht, Jon C. Ison, Veit Schwämmle
Software Mentions: 6
Published: almost 8 years ago

10.1007/s10886-020-01148-8

Phloem Metabolites of Prunus Sp. Rather than Infection with Candidatus Phytoplasma Prunorum Influence Feeding Behavior of Cacopsylla pruni Nymphs
Cited by: 9
Author(s): Jannicke Gallinger, Jürgen Gross
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0132932

Spatiotemporal Patterns of Tumor Occurrence in Children with Intraocular Retinoblastoma
Cited by: 13
Author(s): Benjamin King, Carlos Parra, Yimei Li, Kathleen J. Helton, Ibrahim Qaddoumi, Matthew W. Wilson, Robert J. Ogg
Software Mentions: 6
Published: almost 11 years ago

10.3390/microorganisms8091367

Lifestyle, Lineage, and Geographical Origin Influence Temperature-Dependent Phenotypic Variation across Yeast Strains during Wine Fermentation
Cited by: 4
Author(s): Rebecca C. Deed, Lisa I. Pilkington
Software Mentions: 6
Published: almost 6 years ago

10.1186/1752-0509-6-56

Centrality-based pathway enrichment: a systematic approach for finding significant pathways dominated by key genes
Cited by: 62
Author(s): Zuguang Gu, Jialin Liu, Kun-Ming Cao, Junfeng Zhang, Jin Wang
Software Mentions: 6
Published: about 14 years ago

10.3835/plantgenome2017.03.0015

Prospects for Genomic Selection in Cassava Breeding
Cited by: 95
Author(s): Marnin D. Wolfe, Dunia Pino Del Carpio, Olumide Alabi, Lydia Ezenwaka, Ugochukwu N. Ikeogu, Siraj Ismail Kayondo, Roberto Lozano, Uche Godfrey Okeke, Alfred Ozimati, Williams Esuma, Chiedozie Egesi, Robert Kawuki, Peter Kulakow, Ismail Rabbi, Jean‐Luc Jannink
Software Mentions: 6
Published: over 8 years ago

10.1093/femsyr/foaa044

Pseudohyphal differentiation in Komagataella phaffii: investigating the FLO gene family
Cited by: 3
Author(s): Sonakshi De, Corinna Rebnegger, Josef W. Moser, Nadine E Tatto, Alexandra B. Graf, Diethard Mattanovich, Brigitte Gasser
Software Mentions: 6
Published: almost 6 years ago

10.3389/fmolb.2021.676291

Development and Validation of a 7-Gene Prognostic Signature to Improve Survival Prediction in Pancreatic Ductal Adenocarcinoma
Cited by: 5
Author(s): Zengyu Feng, Qian Hao, Kexian Li, Jianyao Lou, Yulian Wu, Chenghong Peng
Software Mentions: 6
Published: about 5 years ago

10.3389/fmicb.2021.701796

L-Canavanine, a Root Exudate From Hairy Vetch (Vicia villosa) Drastically Affecting the Soil Microbial Community and Metabolite Pathways
Cited by: 7
Author(s): Hossein Mardani-Korrani, Masaru Nakayasu, Shinichi Yamazaki, Yosuke Aoki, Rumi Kaida, Takashi Motobayashi, Masaru Kobayashi, Naoko Ohkama‐Ohtsu, Yosei Oikawa, Akifumi Sugiyama, Yoshiharu Fujii
Software Mentions: 6
Published: almost 5 years ago

10.3389/fgene.2021.678747

Identification of CXCL10-Relevant Tumor Microenvironment Characterization and Clinical Outcome in Ovarian Cancer
Cited by: 5
Author(s): Jing Jin, Yang Li, Tobias Achu Muluh, Liangke Zhi, Qijie Zhao
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-021-87982-6

Association among extracellular superoxide dismutase genotype, plasma concentration, and comorbidity in the very old and centenarians
Cited by: 7
Author(s): Takashi Sasaki, Yukiko Abe, M. Takayama, Tetsuo Adachi, Hideyuki Okano, Nobuyoshi Hirose, Yasumichi Arai
Software Mentions: 6
Published: about 5 years ago

10.1186/s12864-017-4386-y

Global accumulation of circRNAs during aging in Caenorhabditis elegans
Cited by: 127
Author(s): Mariela Cortés-López, Matthew Gruner, Daphne A. Cooper, Hannah N. Gruner, Alexandru-Ioan Voda, Alexander M. van der Linden, Pedro Miura
Software Mentions: 6
Published: over 8 years ago

10.1038/s41598-020-73376-7

RNA oxidation in chromatin modification and DNA-damage response following exposure to formaldehyde
Cited by: 17
Author(s): Juan C. Gonzalez-Rivera, Mark W. Sherman, Dongyu Wang, Jamie C. L. Chuvalo-Abraham, Lea Hildebrandt Ruiz, Lydia M. Contreras
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-021-86032-5

A hierarchical regulatory network analysis of the vitamin D induced transcriptome reveals novel regulators and complete VDR dependency in monocytes
Cited by: 18
Author(s): Timothy Warwick, Marcel H. Schulz, Stefan Günther, Ralf Gilsbach, Antonio Neme, Carsten Carlberg, Ralf P. Brandes, Sabine Seuter
Software Mentions: 6
Published: over 5 years ago

10.1038/s41416-018-0236-1

Phenotype-independent DNA methylation changes in prostate cancer
Cited by: 11
Author(s): Davide Pellacani, Alastair Droop, Fiona M. Frame, Matthew Simms, Vincent M. Mann, Anne T. Collins, Connie J. Eaves, Norman J. Maitland
Software Mentions: 6
Published: almost 8 years ago

10.7554/eLife.54655

Hfq CLASH uncovers sRNA-target interaction networks linked to nutrient availability adaptation
Cited by: 58
Author(s): Ira Alexandra Iosub, Rob W. van Nues, Stuart McKellar, Karen Jule Nieken, Marta Marchioretto, Brandon Sy, Jai J. Tree, Gabriella Viero, Sander Granneman
Software Mentions: 6
Published: about 6 years ago

10.3389/fgene.2020.565206

Identification and Validation of Two Lung Adenocarcinoma-Development Characteristic Gene Sets for Diagnosing Lung Adenocarcinoma and Predicting Prognosis
Cited by: 10
Author(s): Cheng Liu, Xiang Li, Huili Shao, Dan Li
Software Mentions: 6
Published: over 5 years ago

10.1186/s40462-020-00236-4

Winter fidelity, movements, and energy expenditure of Midcontinent Greater White-fronted Geese
Cited by: 10
Author(s): Jay A. VonBank, Mitch D. Weegman, Paul Link, Stephanie A. Cunningham, Kevin J. Kraai, Daniel P. Collins, Bart M. Ballard
Software Mentions: 6
Published: over 5 years ago

10.3389/fgene.2020.00311

Weighted Gene Coexpression Network Analysis of Features That Control Cancer Stem Cells Reveals Prognostic Biomarkers in Lung Adenocarcinoma
Cited by: 57
Author(s): Yi Liao, Yulei Wang, Mengqing Cheng, Chengliang Huang, Xiaoxuan Fan
Software Mentions: 6
Published: about 6 years ago

10.3389/fgene.2021.739975

Prognostic Role of ceRNA Network in Immune Infiltration of Hepatocellular Carcinoma
Cited by: 7
Author(s): Qianhui Xu, Shaohuai Chen, Yuanbo Hu, Wen Huang
Software Mentions: 6
Published: almost 5 years ago

10.1002/ece3.5690

Genetic divergence and phenotypic plasticity contribute to variation in cuticular hydrocarbons in the seaweed fly <i>Coelopa frigida</i>
Cited by: 9
Author(s): Emma L. Berdan, Swantje Enge, Göran M. Nylund, Maren Wellenreuther, Gerrit A. Martens, Henrik Pavia
Software Mentions: 6
Published: almost 7 years ago

10.1038/s41598-017-14788-w

Smoking induces DNA methylation changes in Multiple Sclerosis patients with exposure-response relationship
Cited by: 50
Author(s): Francesco Marabita, Malin Almgren, Louise K. Sjöholm, Lara Kular, Yun Liu, Tojo James, Nimrod Kiss, Andrew P. Feinberg, Tomas Olsson, Ingrid Kockum, Lars Alfredsson, Tomas J. Ekström, Maja Jagodic
Software Mentions: 6
Published: over 8 years ago

10.1038/s41598-019-47921-y

Metataxonomic analyses reveal differences in aquifer bacterial community as a function of creosote contamination and its potential for contaminant remediation
Cited by: 9
Author(s): Aline Daniela Lopes Júlio, Ubiana de Cássia Mourão Silva, Julliane Dutra Medeiros, Daniel Morais, Vera Lúcia dos Santos
Software Mentions: 6
Published: almost 7 years ago

10.3390/s20092546

Mind Wandering in a Multimodal Reading Setting: Behavior Analysis &amp; Automatic Detection Using Eye-Tracking and an EDA Sensor
Cited by: 19
Author(s): Iuliia Brishtel, Anam Ahmad Khan, Thomas Schmidt, Tilman Dingler, Shoya Ishimaru, Andreas Dengel
Software Mentions: 6
Published: about 6 years ago

10.3389/fgene.2021.675260

Aluminum or Low pH – Which Is the Bigger Enemy of Barley? Transcriptome Analysis of Barley Root Meristem Under Al and Low pH Stress
Cited by: 16
Author(s): Miriam Szurman-Zubrzycka, Karolina Chwiałkowska, Magdalena Niemira, Mirosław Kwaśniewski, M. Nawrot, Monika Gajecka, Paul B. Larsen, Iwona Szarejko
Software Mentions: 6
Published: about 5 years ago

10.1038/srep09549

Difference in microRNA expression and editing profile of lung tissues from different pig breeds related to immune responses to HP-PRRSV
Cited by: 33
Author(s): Jia Li, Zhisheng Chen, Junlong Zhao, Liurong Fang, Rui Fang, Jiang Xiao, Xing Chen, Ao Zhou, Yingyin Zhang, Liming Ren, Xiaoxiang Hu, Yaofeng Zhao, Shujun Zhang, Ning Li
Software Mentions: 6
Published: about 11 years ago

10.1016/j.str.2015.12.011

The Role of the Membrane in the Structure and Biophysical Robustness of the Dengue Virion Envelope
Cited by: 79
Author(s): Tyler Reddy, Mark S. P. Sansom
Software Mentions: 6
Published: over 10 years ago

10.3390/jof7080607

The Diplodia Tip Blight Pathogen Sphaeropsis sapinea Is the Most Common Fungus in Scots Pines’ Mycobiome, Irrespective of Health Status—A Case Study from Germany
Cited by: 12
Author(s): Kathrin Blumenstein, Johanna Bußkamp, Gitta Jutta Langer, Ewald Langer, Eeva Terhonen
Software Mentions: 6
Published: almost 5 years ago

10.3389/fonc.2021.650534

High Level of METTL7B Indicates Poor Prognosis of Patients and Is Related to Immunity in Glioma
Cited by: 15
Author(s): Yujia Xiong, Mingxuan Li, Jiwei Bai, Yutao Sheng, Yazhou Zhang
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0222733

BWGS: A R package for genomic selection and its application to a wheat breeding programme
Cited by: 30
Author(s): Gilles Charmet, Louis-Gautier Tran, Jérôme Auzanneau, Renaud Rincent, Sophie Bouchet
Software Mentions: 6
Published: over 6 years ago

10.1186/s13567-015-0177-0

Vaccination of pigs with the S48 strain of Toxoplasma gondii – safer meat for human consumption
Cited by: 42
Author(s): Alison Burrells, Julio Benavides, Germán Cantón, João Luís Garcia, Paul M. Bartley, Mintu Nath, Jackie Thomson, Francesca Chianini, Elisabeth A. Innes, Frank Katzer
Software Mentions: 6
Published: about 11 years ago

10.1186/s13045-021-01131-0

High-resolution Hi-C maps highlight multiscale 3D epigenome reprogramming during pancreatic cancer metastasis
Cited by: 16
Author(s): Bo Ren, Jinshou Yang, Yuming Wang, Gang Ye, Huanyu Wang, Chen Yuan, Ruiyuan Xu, Xu-Ning Fan, Lei You, Taiping Zhang, Yupei Zhao
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-020-65089-8

Immunorthodontics: in vivo gene expression of orthodontic tooth movement
Cited by: 28
Author(s): Yehuda Klein, Omer Fleissig, David Polak, Yechezkel Barenholz, Ofer Mandelboim, Stella Chaushu
Software Mentions: 6
Published: about 6 years ago

10.1186/s12862-021-01773-1

Gut microbiota in two recently diverged passerine species: evaluating the effects of species identity, habitat use and geographic distance
Cited by: 5
Author(s): Jiří Reif, Lucie Schmiedová, Jakub Kreisinger, Tomáš Albrecht, Jiří Reif, Tomasz S. Osiejuk, Radka Reifová
Software Mentions: 6
Published: over 5 years ago

10.1155/2021/9591670

Machine Learning-Based Ensemble Model for Zika Virus T-Cell Epitope Prediction
Cited by: 31
Author(s): Syed Nisar Hussain Bukhari, Amit Jain, Ehtishamul Haq, Moaiad Ahmad Khder, Rahul Neware, Jyoti Bhola, Moslem Lari Najafi
Software Mentions: 6
Published: almost 5 years ago

10.1161/JAHA.119.013152

Cardiac Myosin‐Binding Protein C to Diagnose Acute Myocardial Infarction in the Pre‐Hospital Setting
Cited by: 11
Author(s): Thomas E Kaier, Carsten Stengaard, Jack Marjot, Jacob Thorsted Sørensen, Bashir Alaour, Stavroula Stavropoulou-Tatla, Christian Juhl Terkelsen, Lindsey W. Williams, Kristian Thygesen, Ekkehard Weber, Michael Marber, Hans Erik Bøtker
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.pone.0006462

Community Analysis of Chronic Wound Bacteria Using 16S rRNA Gene-Based Pyrosequencing: Impact of Diabetes and Antibiotics on Chronic Wound Microbiota
Cited by: 193
Author(s): Lance B. Price, Cindy M. Liu, Johan H. Melendez, Yelena M. Frankel, David M. Engelthaler, Maliha Aziz, Jolene R. Bowers, Rogan Rattray, Jacques Ravel, Chris Kingsley, Paul Keim, Gerald S. Lazarus, Jonathan M. Zenilman
Software Mentions: 6
Published: almost 17 years ago

10.1186/1471-2105-11-380

R-Gada: a fast and flexible pipeline for copy number analysis in association studies
Cited by: 48
Author(s): Roger Piqué-Regi, Alejandro Cáceres, Juan R. González
Software Mentions: 6
Published: almost 16 years ago

10.1186/s12862-017-1025-9

Epigenetic variation between urban and rural populations of Darwin’s finches
Cited by: 50
Author(s): Sabrina M. McNew, Daniel Beck, Ingrid Sadler‐Riggleman, Sarah A. Knutie, Jennifer A. H. Koop, Dale H. Clayton, Michael K. Skinner
Software Mentions: 6
Published: almost 9 years ago

10.1002/ece3.4762

Functional connectivity and home range inferred at a microgeographic landscape genetics scale in a desert‐dwelling rodent
Cited by: 10
Author(s): Alejandro Flores‐Manzanero, Madisson A. Luna‐Bárcenas, Rodney J. Dyer, Ella Vázquez‐Domínguez
Software Mentions: 6
Published: over 7 years ago

10.3389/fpsyt.2021.602648

The Relationship Between Working Alliance and Symptom Improvement in Cognitive Therapy for Posttraumatic Stress Disorder
Cited by: 15
Author(s): Esther T. Beierl, Hannah Murray, Milan Wiedemann, Emma Warnock-Parkes, Jennifer Wild, Richard Stott, Nick Grey, David M. Clark, Anke Ehlers
Software Mentions: 6
Published: about 5 years ago

10.1042/BSR20204037

Identification of survival-related alternative splicing signatures in acute myeloid leukemia
Cited by: 5
Author(s): Biyu Zhang, Lei Yang, Xin Wang, Denggang Fu
Software Mentions: 6
Published: about 5 years ago

10.1111/eva.13198

Spatial and temporal genetic variation in an exploited reef fish: The effects of exploitation on cohort genetic structure
Cited by: 2
Author(s): Zahra Salem Taboun, Ryan P. Walter, Jennifer R. Ovenden, Daniel D. Heath
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms9020208

Aquatic Bacterial Diversity, Community Composition and Assembly in the Semi-Arid Inner Mongolia Plateau: Combined Effects of Salinity and Nutrient Levels
Cited by: 29
Author(s): Xiangming Tang, Guobo Xie, Kwang‐Tsao Shao, Wei Tian, Guang Gao, Boqiang Qin
Software Mentions: 6
Published: over 5 years ago

10.1186/s12882-019-1442-7

Ambulatory monitoring unmasks hypertension among kidney transplant patients: single center experience and review of the literature
Cited by: 6
Author(s): Eitan Gluskin, Keren Tzukert, Irit Mor‐Yosef Levi, Olga Gotsman, Itamar Sagiv, Roy Abel, Aharon Bloch, Dvorah Rubinger, Michal Aharon, Michal Dranitzki Elhalel, Iddo Z. Ben‐Dov
Software Mentions: 6
Published: almost 7 years ago

10.26508/lsa.201900612

Interferon lambda 4 can directly activate human CD19⁺ B cells and CD8⁺ T cells
Cited by: 4
Author(s): Mairene Coto‐Llerena, Marco Lepore, Julian Spagnuolo, Daniela Di Blasi, Diego Calabrese, Aleksei Suslov, Glenn R. Bantug, François H. T. Duong, Luigi Terracciano, Gennaro De Libero, Markus H. Heim
Software Mentions: 6
Published: over 5 years ago

10.3390/microorganisms9030492

The Lung Microbiome in Young Children with Cystic Fibrosis: A Prospective Cohort Study
Cited by: 11
Author(s): Barry Linnane, Aaron M. Walsh, Calum J. Walsh, Fiona Crispie, Órla O’Sullivan, Paul D. Cotter, Michael McDermott, J. A. A. Renwick, Paul McNally
Software Mentions: 6
Published: over 5 years ago

10.3390/plants10061033

Metabolic Alterations in Pisum sativum Roots during Plant Growth and Arbuscular Mycorrhiza Development
Cited by: 13
Author(s): O. Y. Shtark, Roman Puzanskiy, G. S. Avdeeva, Vladislav V. Yemelyanov, А. Л. Шаварда, Daria A. Romanyuk, Marina S. Kliukova, А. А. Кирпичникова, И. А. Тихонович, Vladimir A. Zhukov, М. Ф. Шишова
Software Mentions: 6
Published: about 5 years ago

10.3390/insects11080517

The Gut–Brain–Microbiome Axis in Bumble Bees
Cited by: 8
Author(s): Laura Leger, Quinn S. McFrederick
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pntd.0009500

Lay attitudes and misconceptions and their implications for the control of brucellosis in an agro-pastoral community in Kilombero district, Tanzania
Cited by: 6
Author(s): Caroline M. Mburu, Salome A. Bukachi, Kathrin H. Tokpa, Gilbert Fokou, Khamati Shilabukha, Mangi J. Ezekiel, Bassirou Bonfoh, Rudovick Kazwala, Katharina Kreppel
Software Mentions: 6
Published: about 5 years ago

10.7554/eLife.57804

External location of touch is constructed post-hoc based on limb choice
Cited by: 16
Author(s): Femke Maij, Christian Seegelke, W. Pieter Medendorp, Tobias Heed
Software Mentions: 6
Published: almost 6 years ago

10.3390/plants8120559

Identification of Stem Rust Resistance Genes in the Winter Wheat Collection from Southern Russia
Cited by: 5
Author(s): А. В. Алабушев, Н. Н. Вожжова, N. T. Kupreyshvili, Н. В. Шишкин, Д. М. Марченко, Е. В. Ионова
Software Mentions: 6
Published: over 6 years ago

10.3390/pathogens9010024

Genome-Wide Analysis of Cyclophilin Proteins in 21 Oomycetes
Cited by: 2
Author(s): Yan Zhang, Kyle Fletcher, Rongkui Han, Richard W. Michelmore, Ruiwu Yang
Software Mentions: 6
Published: over 6 years ago

10.3389/fnins.2021.667011

Benchmarking Highly Parallel Hardware for Spiking Neural Networks in Robotics
Cited by: 5
Author(s): Lea Steffen, Robin Koch, Stefan Ulbrich, Sven Nitzsche, Arne Roennau, Rüdiger Dillmann
Software Mentions: 6
Published: about 5 years ago

10.1038/s41426-018-0204-0

A viral race for primacy: co-infection of a natural pair of low and highly pathogenic H7N7 avian influenza viruses in chickens and embryonated chicken eggs
Cited by: 19
Author(s): Annika Graaf, Reiner Ulrich, Pavlo Maksimov, David Scheibner, Susanne Koethe, Elsayed M. Abdelwhab, Thomas C. Mettenleiter, Martin Beer, Timm Harder
Software Mentions: 6
Published: over 7 years ago

10.1186/s12915-021-01002-7

A cell-to-patient machine learning transfer approach uncovers novel basal-like breast cancer prognostic markers amongst alternative splice variants
Cited by: 12
Author(s): Jean-Philippe Villemin, Claudio Lorenzi, Marie-Sarah Cabrillac, Andrew Oldfield, William Ritchie, Reini F. Luco
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pcbi.1002521

The Layer-Oriented Approach to Declarative Languages for Biological Modeling
Cited by: 10
Author(s): Ivan Raikov, Erik De Schutter
Software Mentions: 6
Published: about 14 years ago

10.3390/molecules25061442

Discrimination of Gentiana and Its Related Species Using IR Spectroscopy Combined with Feature Selection and Stacked Generalization
Cited by: 26
Author(s): Tao Shen, Hong Yu, Yuanzhong Wang
Software Mentions: 6
Published: over 6 years ago

10.1186/s13148-020-0810-2

5-Hydroxymethylcytosine signatures in circulating cell-free DNA as diagnostic and predictive biomarkers for coronary artery disease
Cited by: 12
Author(s): Chunlan Dong, Jiemei Chen, Jilin Zheng, Yiming Liang, Tao Yu, Yupeng Liu, Feng Gao, Jie Long, Hangyu Chen, Qianhui Zhu, Zilong He, Songnian Hu, Chuan He, Jian Lin, Yi-Da Tang, Haibo Zhu
Software Mentions: 6
Published: over 6 years ago

10.3390/foods10071543

Comparative Study of Several Machine Learning Algorithms for Classification of Unifloral Honeys
Cited by: 10
Author(s): Fernando Mateo, Andrea Tarazona, Eva M. Mateo
Software Mentions: 6
Published: about 5 years ago

10.1186/s12864-019-5553-0

Comparing DNA methylation profiles in saliva and intestinal mucosa
Cited by: 13
Author(s): Nerissa L. Hearn, Aaron S. Coleman, Vincent Ho, Christine L Chiu, Joanne M. Lind
Software Mentions: 6
Published: over 7 years ago

10.1534/g3.113.006742

The Developmental Transcriptome of the Mosquito <i>Aedes aegypti</i>, an Invasive Species and Major Arbovirus Vector
Cited by: 184
Author(s): Omar S. Akbari, Igor Antoshechkin, Henry Amrhein, Brian A. Williams, Rose DiLoreto, Jeremy E. Sandler, Bruce A. Hay
Software Mentions: 6
Published: almost 13 years ago

10.1186/s12862-020-01645-0

What makes a fang? Phylogenetic and ecological controls on tooth evolution in rear-fanged snakes
Cited by: 20
Author(s): Erin P. Westeen, Andrew M. Durso, Michael C. Gründler, Daniel L. Rabosky, Alison R. Davis Rabosky
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-019-50942-2

Hidden Markov models reveal temporal patterns and sex differences in killer whale behavior
Cited by: 8
Author(s): Jennifer B. Tennessen, Marla M. Holt, Eric J. Ward, M. Bradley Hanson, Candice K. Emmons, D. K. Giles, Joyce Hogan
Software Mentions: 6
Published: over 6 years ago

10.1017/S0033291719002253

Cognitive paths from trauma to posttraumatic stress disorder: a prospective study of Ehlers and Clark's model in survivors of assaults or road traffic collisions
Cited by: 21
Author(s): Esther T. Beierl, Inga Böllinghaus, David M. Clark, E Glucksman, Anke Ehlers
Software Mentions: 6
Published: almost 7 years ago

10.1186/s40168-016-0174-1

Host species identity, site and time drive temperate tree phyllosphere bacterial community structure
Cited by: 163
Author(s): Isabelle Laforest‐Lapointe, Christian Messier, Steven W. Kembel
Software Mentions: 6
Published: about 10 years ago

10.1038/s41598-017-17407-w

Activity-Dependent Regulation of Alternative Cleavage and Polyadenylation During Hippocampal Long-Term Potentiation
Cited by: 37
Author(s): Mariana Fontes, Ayşegül Güvenek, Riki Kawaguchi, Dinghai Zheng, Alden Huang, Victoria M. Ho, Patrick B. Chen, Xiaochuan Liu, Thomas J. O’Dell, Giovanni Coppola, Bin Tian, Kelsey C. Martin
Software Mentions: 6
Published: over 8 years ago

10.3390/plants8070199

Intraspecific Fine-Root Trait-Environment Relationships across Interior Douglas-Fir Forests of Western Canada
Cited by: 20
Author(s): Camille E. Defrenne, M. Luke McCormack, W. Jean Roach, Shalom Daniel Addo-Danso, Suzanne W. Simard
Software Mentions: 6
Published: about 7 years ago

10.1186/s12284-021-00522-8

Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata)
Cited by: 11
Author(s): Jian Xie, Xiaoqing Wang, Jiawang Xu, Haizhu Xie, Yaohui Cai, Yizheng Liu, Xia Ding
Software Mentions: 6
Published: almost 5 years ago

10.3758/s13414-020-02068-1

Eye behavior predicts susceptibility to visual distraction during internally directed cognition
Cited by: 13
Author(s): Sonja Annerer‐Walcher, Christof Körner, Roger E. Beaty, Mathias Benedek
Software Mentions: 6
Published: about 6 years ago

10.3390/insects12020135

Joint Impacts of Drought and Habitat Fragmentation on Native Bee Assemblages in a California Biodiversity Hotspot
Cited by: 9
Author(s): Keng‐Lou James Hung, Sara Sandoval, John S. Ascher, David A. Holway
Software Mentions: 6
Published: over 5 years ago

10.3390/pathogens9121057

Differential Mortality and High Viral Load in Naive Pacific Oyster Families Exposed to OsHV-1 Suggests Tolerance Rather than Resistance to Infection
Cited by: 7
Author(s): M. Victoria Agnew, Carolyn S. Friedman, C. Langdon, Konstantin Divilov, Blaine Schoolfield, Benjamín Morga, Lionel Dégremont, Arun K. Dhar, Peter D. Kirkland, Brett R. Dumbauld, Colleen A. Burge
Software Mentions: 6
Published: over 5 years ago

10.7554/eLife.22057

T cell receptor repertoires of mice and humans are clustered in similarity networks around conserved public CDR3 sequences
Cited by: 121
Author(s): Asaf Madi, Asaf Poran, Eric Shifrut, Shlomit Reich-Zeliger, Erez Greenstein, Irena Zaretsky, Tomer Arnon, François Van Laethem, Alfred Singer, Jinghua Lu, Peter D. Sun, Irun R. Cohen, Nir Friedman
Software Mentions: 6
Published: almost 9 years ago

10.1371/journal.pone.0219747

2,3,7,8-Tetrachlorodibenzo-p-dioxin modifies alternative splicing in mouse liver
Cited by: 5
Author(s): Ana B. Villaseñor-Altamirano, John D. Watson, Stephenie D. Prokopec, Cindy Q. Yao, Paul C. Boutros, Raimo Pohjanvirta, Jesús Valdés‐Flores, Guillermo Elizondo
Software Mentions: 6
Published: almost 7 years ago

10.3390/molecules25112615

The Study on the hERG Blocker Prediction Using Chemical Fingerprint Analysis
Cited by: 21
Author(s): Kwang-Eun Choi, Anand Balupuri, Nam Sook Kang
Software Mentions: 6
Published: about 6 years ago

10.1128/AEM.02220-20

Influence of Spatial Scale on Structure of Soil Bacterial Communities across an Arctic Landscape
Cited by: 5
Author(s): Lucie Malard, Muhammad Zohaib Anwar, Carsten Suhr Jacobsen, David A. Pearce
Software Mentions: 6
Published: over 5 years ago

10.3390/ani11071917

Sensor and Video: Two Complementary Approaches for Evaluation of Dairy Cow Behavior after Calving Sensor Attachment
Cited by: 2
Author(s): Johanna Pfeiffer, Olivia Spykman, Markus Gandorfer
Software Mentions: 6
Published: about 5 years ago

10.1242/jcs.259051

The RNA-binding protein Puf5 contributes to buffering of mRNA upon chromatin-mediated changes in nascent transcription
Cited by: 0
Author(s): David Z. Kochan, Julia S. P. Mawer, Jennifer Massen, Kiril Tishinov, Swati Parekh, Martin Graef, Anne Spang, Peter Tessarz
Software Mentions: 6
Published: almost 5 years ago

10.1016/j.stemcr.2017.09.018

Laser Capture and Deep Sequencing Reveals the Transcriptomic Programmes Regulating the Onset of Pancreas and Liver Differentiation in Human Embryos
Cited by: 33
Author(s): Rachel Jennings, Andrew Berry, Dave T. Gerrard, Stephen J. Wearne, James Strutt, Sarah Withey, Mariya Chhatriwala, Karen Piper Hanley, Ludovic Vallier, Nicoletta Bobola, Neil A. Hanley
Software Mentions: 6
Published: over 8 years ago

10.1098/rsos.200327

Buried treasure—marine turtles do not ‘disguise’ or ‘camouflage’ their nests but avoid them and create a decoy trail
Cited by: 1
Author(s): Thomas J. Burns, Rory R. Thomson, Rosemary A. McLaren, Jack Rawlinson, Euan M. McMillan, Hannah Davidson, Malcolm W. Kennedy
Software Mentions: 6
Published: about 6 years ago

10.1038/s41598-019-44302-3

Dose-dependent effects of chronic alcohol drinking on peripheral immune responses
Cited by: 41
Author(s): Suhas Sureshchandra, Anthony M. Raus, Allen Jankeel, Brian Jin Kee Ligh, Nicole A.R. Walter, Natali Newman, Kathleen A. Grant, Ilhem Messaoudi
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pone.0149891

Identification and Characterization of msf, a Novel Virulence Factor in Haemophilus influenzae
Cited by: 15
Author(s): Jennifer M. Kress-Bennett, N. Luisa Hiller, Rory Eutsey, Evan Powell, Mark Longwell, Todd A. Hillman, Tenisha Blackwell, Barbara Byers, Joshua Chang Mell, J. Christopher Post, Fang Hu, Garth D. Ehrlich, Benjamin Janto
Software Mentions: 6
Published: over 10 years ago

10.1186/s13059-018-1407-3

Quartz-Seq2: a high-throughput single-cell RNA-sequencing method that effectively uses limited sequence reads
Cited by: 90
Author(s): Yohei Sasagawa, Hiroki Danno, Hitomi Takada, Masashi Ebisawa, Kaori Tanaka, Tetsutaro Hayashi, Akira Kurisaki, Itoshi Nikaido
Software Mentions: 6
Published: over 8 years ago