Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pbio.3000378

https://doi.org/10.1371/journal.pbio.3000378

Changes in chromatin accessibility ensure robust cell cycle exit in terminally differentiated cells

Cited by: 33
Author(s): Yiqin Ma, Daniel J. McKay, Laura Buttitta
Published: about 5 years ago

Software Mentions 6

bioconductor: ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
Papers that mentioned: 145
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: PePr
Peak-calling and Prioritization pipeline for replicated ChIP-Seq data
Papers that mentioned: 18