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Papers: 10.1371/journal.pcbi.1007337

https://doi.org/10.1371/journal.pcbi.1007337

Identification of gene specific cis-regulatory elements during differentiation of mouse embryonic stem cells: An integrative approach using high-throughput datasets

Cited by: 15
Author(s): M. Vijayabaskar, Debbie K. Goode, Nadine Obier, Monika Lichtinger, Amber M.L. Emmett, Fatin N Zainul Abidin, Nisar Ahmed Shar, Rebecca Hannah, Salam A. Assi, Michael Lie-A-Ling, Berthold Göttgens, Georges Lacaud, Valérie Kouskoff, Constanze Bonifer, David R. Westhead
Published: over 6 years ago

Software Mentions 6

bioconductor: ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
Papers that mentioned: 145
Very Likely Science (76)
cran: glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
Papers that mentioned: 1,607
Very Likely Science (100)
cran: SEA
Segregation Analysis
Papers that mentioned: 238
Very Likely Science (93)
pypi: glmnet
Python wrapper for glmnet
Papers that mentioned: 1,607
Very Likely Science (100)
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233
Very Likely Science (75)
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
Very Likely Science (100)