Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-020-3403-3

https://doi.org/10.1186/s12859-020-3403-3

Comparative analysis of ChIP-exo peak-callers: impact of data quality, read duplication and binding subtypes

Cited by: 1
Author(s): Vasudha Sharma, Sharmistha Majumdar
Published: almost 5 years ago

Software Mentions 6

bioconductor: CexoR
An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates
Papers that mentioned: 1
bioconductor: ChIPexoQual
ChIPexoQual
Papers that mentioned: 1
bioconductor: GEM
GEM: fast association study for the interplay of Gene, Environment and Methylation
Papers that mentioned: 317
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283
pypi: MACE

Papers that mentioned: 72
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233