10.3390/v10120685

The Challenges of Analysing Highly Diverse Picobirnavirus Sequence Data
Cited by: 15
Author(s): Matthew A. Knox, Kristene Gedye, David T. S. Hayman
Software Mentions: 6
Published: over 7 years ago

10.3390/insects10110388

Transgenic Winter Wheat Expressing the Sucrose Transporter HvSUT1 from Barley does not Affect Aphid Performance
Cited by: 4
Author(s): Yan Yang, Stefanie Kloos, Isabel Mora-Ramírez, Jörg Romeis, Susanne Brunner, Yunhe Li, Michael Meissle
Software Mentions: 6
Published: over 6 years ago

10.3389/fncel.2019.00510

Brainstem-Evoked Transcription of Defensive Genes After Spinal Cord Injury
Cited by: 2
Author(s): Walter J. Jermakowicz, Melissa M. Carballosa-Gautam, Alberto Vitores, Ian D. Hentall
Software Mentions: 6
Published: over 6 years ago

10.3389/frai.2021.644554

Using Twitter Data for the Study of Language Change in Low-Resource Languages. A Panel Study of Relative Pronouns in Frisian
Cited by: 0
Author(s): Jelske Dijkstra, Wilbert Heeringa, Lysbeth Jongbloed-Faber, H. Van de Velde
Software Mentions: 6
Published: about 5 years ago

10.1186/1471-2105-15-274

A feature selection method for classification within functional genomics experiments based on the proportional overlapping score
Cited by: 38
Author(s): Osama Mahmoud, Andrew Harrison, Aris Perperoglou, Asma Gul, Zardad Khan, Metodi V. Metodiev, Berthold Lausen
Software Mentions: 6
Published: almost 12 years ago

10.3390/insects11060351

Limited Effect of Management on Apple Pollination: A Case Study from an Oceanic Island
Cited by: 7
Author(s): Adara Pardo, David H. Lopes, Natalia Fierro, Paulo A. V. Borges
Software Mentions: 6
Published: about 6 years ago

10.3389/fcimb.2019.00392

Early Transcriptional Landscapes of Chlamydia trachomatis-Infected Epithelial Cells at Single Cell Resolution
Cited by: 13
Author(s): Regan J. Hayward, J. Wallis Marsh, Michael S. Humphrys, Wilhelmina M. Huston, Garry Myers
Software Mentions: 6
Published: over 6 years ago

10.1186/s12859-020-03891-x

Integrative approach for detecting membrane proteins
Cited by: 6
Author(s): Munira Alballa, Gregory Butler
Software Mentions: 6
Published: over 5 years ago

10.1186/s12859-019-2780-y

Focused multidimensional scaling: interactive visualization for exploration of high-dimensional data
Cited by: 11
Author(s): Lea Urpa, Simon Anders
Software Mentions: 6
Published: about 7 years ago

10.1534/g3.118.200129

Genome-Wide Association Mapping Uncovers <i>Fw1</i>, a Dominant Gene Conferring Resistance to Fusarium Wilt in Strawberry
Cited by: 40
Author(s): Dominique D A Pincot, Thomas J. Poorten, Michael A. Hardigan, Julia M. Harshman, Charlotte B. Acharya, Glenn Cole, Thomas R. Gordon, Michelle Stueven, Patrick P. Edger, Steven J. Knapp
Software Mentions: 6
Published: about 8 years ago

10.3389/fgene.2021.654517

Identification of Key Genes Associated With the Process of Hepatitis B Inflammation and Cancer Transformation by Integrated Bioinformatics Analysis
Cited by: 7
Author(s): Jingyuan Zhang, Xinkui Liu, Wei Zhou, Shan Lu, Chao Wu, Zhishan Wu, Runping Liu, Xiaojiaoyang Li, Jiarui Wu, Yingying Liu, Siyu Guo, Shanshan Jia, Xiaomeng Zhang, Miaomiao Wang
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0219807

Resistome metagenomics from plate to farm: The resistome and microbial composition during food waste feeding and composting on a Vermont poultry farm
Cited by: 12
Author(s): Korin Eckstrom, John W. Barlow
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0064212

Differential Response of the Cynomolgus Macaque Gut Microbiota to Shigella Infection
Cited by: 52
Author(s): Anna M. Seekatz, Aruna Panda, David A. Rasko, Franklin R. Toapanta, Emiley A. Eloe‐Fadrosh, Abdul Qayyum Khan, Zhenqiu Liu, Steven T. Shipley, Louis J. DeTolla, Marcelo B. Sztein, Claire M. Fraser
Software Mentions: 6
Published: about 13 years ago

10.1242/bio.058222

RNA-Seq reveals changes in human placental metabolism, transport and endocrinology across the first–second trimester transition
Cited by: 15
Author(s): Malwina Prater, Russell S. Hamilton, Hong Wa Yung, Andrew Sharkey, Paul Robson, N. Erlyani Abd Hamid, Eric Jauniaux, D. Stephen Charnock-Jones, Graham J. Burton, Tereza Cindrová‐Davies
Software Mentions: 6
Published: about 5 years ago

10.3389/fpsyg.2019.00031

A Tendency Towards Details? Inconsistent Results on Auditory and Visual Local-To-Global Processing in Absolute Pitch Musicians
Cited by: 9
Author(s): Teresa Wenhart, Eckart Altenmüller
Software Mentions: 6
Published: over 7 years ago

10.1186/s12864-021-07686-z

Evaluation of tools for identifying large copy number variations from ultra-low-coverage whole-genome sequencing data
Cited by: 6
Author(s): Johannes Smolander, Sofia Khan, Kalaimathy Singaravelu, Leni Kauko, Riikka Lund, Asta Laiho, Laura L. Elo
Software Mentions: 6
Published: about 5 years ago

10.1186/s12859-019-3178-6

SIMLIN: a bioinformatics tool for prediction of S-sulphenylation in the human proteome based on multi-stage ensemble-learning models
Cited by: 8
Author(s): Xiaochuan Wang, Chen Li, Fuyi Li, Varun Sharma, Jiangning Song, Geoffrey I. Webb
Software Mentions: 6
Published: over 6 years ago

10.3390/metabo4020433

Influence of Missing Values Substitutes on Multivariate Analysis of Metabolomics Data
Cited by: 139
Author(s): Piotr S. Gromski, Yun Xu, Helen L. Kotze, Elon Correa, David I. Ellis, Emily G. Armitage, Michael L. Turner, Royston Goodacre
Software Mentions: 6
Published: about 12 years ago

10.1186/s12859-020-3403-3

Comparative analysis of ChIP-exo peak-callers: impact of data quality, read duplication and binding subtypes
Cited by: 1
Author(s): Vasudha Sharma, Sharmistha Majumdar
Software Mentions: 6
Published: over 6 years ago

10.1186/s13148-018-0593-x

Significantly altered peripheral blood cell DNA methylation profile as a result of immediate effect of metformin use in healthy individuals
Cited by: 19
Author(s): Ilze Elbere, Ivars Silamiķelis, Monta Ustinova, Ineta Kalniņa, Linda Zaharenko, Raitis Pečulis, Ilze Konrāde, Diana M. Ciuculete, Christina Zhukovsky, Dita Gudrā, Ilze Radoviča-Spalviņa, Dāvids Fridmanis, Valdis Pīrāgs, Helgi B. Schiöth, Jānis Kloviņš
Software Mentions: 6
Published: over 7 years ago

10.1002/ece3.7505

Valley‐scale hydrogeomorphology drives river fish assemblage variation in Mongolia
Cited by: 8
Author(s): Alain Maasri, Mark Pyron, Emily R. Arsenault, James H. Thorp, Bud Mendsaikhan, Flavia Tromboni, Mario Minder, Scott J. Kenner, John H. Costello, Sudeep Chandra, Amarbat Otgonganbat, Bazartseren Boldgiv
Software Mentions: 6
Published: over 5 years ago

10.1186/s40478-019-0681-y

A simplified approach using Taqman low-density array for medulloblastoma subgrouping
Cited by: 17
Author(s): Gustavo Alencastro Veiga Cruzeiro, Karina Bezerra Salomão, Carlos Alberto Oliveira de Biagi, Martin Baumgärtner, Dominik Sturm, Régia Caroline Peixoto Lira, Taciani de Almeida Magalhães, Mirella Baroni, Vanessa da Silva Silveira, Fabiano Pinto Saggioro, Ricardo Santos de Oliveira, Paulo Henrique dos Santos Klinger, Ana Luíza Seidinger, José Andrés Yunes, Rosane Gomes de Paula Queiróz, Sueli Mieko Oba-Shinjo, Carlos Alberto Scrideli, Suely Kazue Nagahashi Marie, Luíz Gonzaga Tone, Elvis Terci Valera
Software Mentions: 6
Published: over 7 years ago

10.1186/s12885-021-08431-1

Five metastasis-related mRNAs signature predicting the survival of patients with liver hepatocellular carcinoma
Cited by: 7
Author(s): Chao Chen, Yan Qun Liu, Shi Qiu, Ya Li, Ning Jun Yu, Kang Liu, Li Ming Zhong
Software Mentions: 6
Published: about 5 years ago

10.1038/s41438-018-0090-6

Genetic characterization of worldwide Prunus domestica (plum) germplasm using sequence-based genotyping
Cited by: 50
Author(s): Tetyana Zhebentyayeva, Vijay Shankar, R. Scorza, Ann M. Callahan, Michel Ravelonandro, Sarah Castro, Theodore M. DeJong, Christopher Saski, Chris Dardick
Software Mentions: 6
Published: over 7 years ago

10.3389/fpsyg.2020.00905

From Abstract Symbols to Emotional (In-)Sights: An Eye Tracking Study on the Effects of Emotional Vignettes and Pictures
Cited by: 5
Author(s): Franziska Usée, Arthur Jacobs, Jana Lüdtke
Software Mentions: 6
Published: about 6 years ago

10.3389/fpsyg.2021.713839

Stereotype Content at the Intersection of Gender and Sexual Orientation
Cited by: 10
Author(s): Amanda Klysing, Anna Lindqvist, Fredrik Björklund
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0242675

Diversity of bacteria populations associated with different thallus regions of the brown alga Laminaria digitata
Cited by: 20
Author(s): Maureen W. Ihua, Jamie A. FitzGerald, Freddy Guihéneuf, Stephen A. Jackson, Marcus J. Claesson, Dagmar B. Stengel, Alan D. W. Dobson
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2017.01452

Watershed Urbanization Linked to Differences in Stream Bacterial Community Composition
Cited by: 88
Author(s): Jacob D. Hosen, Catherine M. Febria, Byron C. Crump, Margaret A. Palmer
Software Mentions: 6
Published: almost 9 years ago

10.3389/fpsyt.2020.00217

Sex-Specific Differences in Severity of Depressive Symptoms, Heart Rate Variability, and Neurocognitive Profiles of Depressed Young Adults: Exploring Characteristics for Mild Depression
Cited by: 5
Author(s): Jong-Deock Lim, Je Yeon Yun, Yoobin Choi, Seong Hee Choi, Young-Sang Kwon, Hwa Young Lee, Joon Hwan Jang
Software Mentions: 6
Published: over 6 years ago

10.3389/fpsyg.2017.01268

Age-Dependent Positivity-Bias in Children’s Processing of Emotion Terms
Cited by: 17
Author(s): Daniela Bahn, Michael Vesker, José C. García Alanis, Gudrun Schwarzer, Christina Kauschke
Software Mentions: 6
Published: almost 9 years ago

10.3389/fpls.2018.00599

Landscape- and Local-Scale Actions Are Essential to Conserve Regional Macrophyte Biodiversity
Cited by: 4
Author(s): Munemitsu Akasaka, Shinsuke Higuchi, Noriko Takamura
Software Mentions: 6
Published: about 8 years ago

10.1371/journal.pone.0243746

Image-based screen capturing misfolding status of Niemann-Pick type C1 identifies potential candidates for chaperone drugs
Cited by: 7
Author(s): Ryuta Shioi, Fumika Karaki, Hirosuke Yoshioka, Tomomi Noguchi‐Yachide, Minoru Ishikawa, Kosuke Dodo, Yuichi Hashimoto, Mikiko Sodeoka, Kenji Ohgane
Software Mentions: 6
Published: over 5 years ago

10.1002/ece3.7838

Climatic‐niche evolution with key morphological innovations across clades within <i>Scutiger boulengeri</i> (Anura: Megophryidae)
Cited by: 5
Author(s): Xiuqin Lin, Chungkun Shih, Yinmeng Hou, Xiaoxiao Shu, Meihua Zhang, Junhua Hu, Jianping Jiang, Feng Xie
Software Mentions: 6
Published: about 5 years ago

10.1007/s00401-018-1821-3

5-Hydroxymethylcytosine preferentially targets genes upregulated in isocitrate dehydrogenase 1 mutant high-grade glioma
Cited by: 10
Author(s): Wioletta K. Glowacka, Harshika Jain, Makiko Okura, Abulizi Maimaitiming, Yasin Mamatjan, Romina Nejad, Hamza Farooq, Michael D. Taylor, Kenneth Aldape, Paul Kongkham
Software Mentions: 6
Published: over 8 years ago

10.1186/s12864-021-07930-6

Choice of pre-processing pipeline influences clustering quality of scRNA-seq datasets
Cited by: 4
Author(s): Inbal Shainer, Manuel Stemmer
Software Mentions: 6
Published: almost 5 years ago

10.1186/s13613-017-0263-8

Diagnostic accuracy of quantitative neuromuscular ultrasound for the diagnosis of intensive care unit-acquired weakness: a cross-sectional observational study
Cited by: 49
Author(s): Esther Witteveen, Juultje Sommers, Luuk Wieske, Jonne Doorduin, Nens van Alfen, Marcus J. Schultz, Ivo N. van Schaik, Janneke Horn, Camiel Verhamme
Software Mentions: 6
Published: about 9 years ago

10.1038/s41409-019-0520-6

High-resolution HLA phased haplotype frequencies to predict the success of unrelated donor searches and clinical outcome following hematopoietic stem cell transplantation
Cited by: 10
Author(s): Stéphane Bühler, Helen Baldomero, Sylvie Ferrari‐Lacraz, José Manuel Nunes, Alicia Sanchez‐Mazas, Stravroula Massouridi-Levrat, Dominik Heim, Jörg Halter, Nair Gayathri, Yves Chalandon, Urs Schanz, Tayfun Güngör, Grazia Nicoloso, Jean‐Marie Tiercy, Jakob Passweg, Jean Villard
Software Mentions: 6
Published: about 7 years ago

10.1186/s10194-019-0987-y

Predicting treatment response using pharmacy register in migraine
Cited by: 6
Author(s): Thomas Folkmann Hansen, Mona Ameri Chalmer, Thilde Marie Haspang, Lisette J. A. Kogelman, Jes Olesen
Software Mentions: 6
Published: over 7 years ago

10.1128/mBio.00170-21

Viral Rebound Kinetics Correlate with Distinct HIV Antibody Features
Cited by: 7
Author(s): Yannic C. Bartsch, Carolin Loos, Evan Rossignol, Jesse Fajnzylber, Dansu Yuan, Anchalee Avihingsanon, Sasiwimol Ubolyam, Thidarat Jupimai, Bernard Hirschel, Jintanat Ananworanich, Douglas A. Lauffenburger, Jonathan Z. Li, Galit Alter, Boris Jülg
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pcbi.1006701

New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx
Cited by: 271
Author(s): Mohamed Mounir, Marta Lucchetta, Tiago Henrique Da T.C. Silva, Catharina Olsen, Gianluca Bontempi, Xi Chen, Houtan Noushmehr, Antonio Colaprico, Elena Papaleo
Software Mentions: 6
Published: over 7 years ago

10.3389/fpls.2021.695701

Effects of Prohydrojasmon on the Number of Infesting Herbivores and Biomass of Field-Grown Japanese Radish Plants
Cited by: 2
Author(s): Kengo Yoshida, Masayoshi Uefune, Rika Ozawa, Hiroshi Abe, Yuka Okemoto, Kinuyo Yoneya, Junji Takabayashi
Software Mentions: 6
Published: almost 5 years ago

10.1186/s13059-015-0815-x

The estrous cycle surpasses sex differences in regulating the transcriptome in the rat medial prefrontal cortex and reveals an underlying role of early growth response 1
Cited by: 48
Author(s): Florian Duclot, Mohamed Kabbaj
Software Mentions: 6
Published: over 10 years ago

10.3389/fphys.2021.648019

Non-cross Bridge Viscoelastic Elements Contribute to Muscle Force and Work During Stretch-Shortening Cycles: Evidence From Whole Muscles and Permeabilized Fibers
Cited by: 8
Author(s): Anthony L. Hessel, Jenna A. Monroy, Kiisa C. Nishikawa
Software Mentions: 6
Published: over 5 years ago

10.3389/fneur.2019.00844

Bifurcation Configuration Is an Independent Risk Factor for Aneurysm Rupture Irrespective of Location
Cited by: 17
Author(s): Qinglin Liu, Peng Jiang, Yuhua Jiang, Shaolin Li, Huijian Ge, Hengwei Jin, Youxiang Li
Software Mentions: 6
Published: almost 7 years ago

10.3389/fpls.2020.00759

The Importance of Incorporating Landscape Change for Predictions of Climate-Induced Plant Phenological Shifts
Cited by: 0
Author(s): Chelsea Chisholm, Michael Becker, W. H. Pollard
Software Mentions: 6
Published: about 6 years ago

10.1038/s41598-020-69905-z

A lncRNA landscape in breast cancer reveals a potential role for AC009283.1 in proliferation and apoptosis in HER2-enriched subtype
Cited by: 20
Author(s): Alberto Cedro‐Tanda, Magdalena Ríos-Romero, Sandra Romero-Córdoba, Mireya Cisneros-Villanueva, Rosa Rebollar-Vega, Luis Alfaro-Ruiz, Silvia Jiménez-Morales, Carlos Alberto Domínguez-Reyes, Felipe Villegas-Carlos, Alberto Tenorio-Torres, Verónica Bautista-Piña, Fredy Omar Beltrán-Anaya, Alfredo Hidalgo‐Miranda
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-017-17407-w

Activity-Dependent Regulation of Alternative Cleavage and Polyadenylation During Hippocampal Long-Term Potentiation
Cited by: 37
Author(s): Mariana Fontes, Ayşegül Güvenek, Riki Kawaguchi, Dinghai Zheng, Alden Huang, Victoria M. Ho, Patrick B. Chen, Xiaochuan Liu, Thomas J. O’Dell, Giovanni Coppola, Bin Tian, Kelsey C. Martin
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pbio.2005710

Drosophila melanogaster establishes a species-specific mutualistic interaction with stable gut-colonizing bacteria
Cited by: 152
Author(s): Inês S. Pais, Rita S Valente, Marta Sporniak, Luı́s Teixeira
Software Mentions: 6
Published: almost 8 years ago

10.1371/journal.pbio.2003703

Population genomics of Mesolithic Scandinavia: Investigating early postglacial migration routes and high-latitude adaptation
Cited by: 164
Author(s): Torsten Günther, Helena Malmström, Emma Svensson, Ayça Omrak, Federico Sánchez-Quinto, Gülşah Merve Kılınç, Maja Krzewińska, Gunilla Eriksson, Magdalena Fraser, Hanna Edlund, Arielle R. Munters, Alexandra Coutinho, Luciana G. Simões, Mário Vicente, Anders Sjölander, Berit J. Sellevold, Roger Jørgensen, Peter Claes, Mark D. Shriver, Cristina Valdiosera, Mihai G. Netea, Jan Apel, Kerstin Lidén, Birgitte Skår, Jan Storå, Anders Götherström, Mattias Jakobsson
Software Mentions: 6
Published: over 8 years ago

10.1038/s41598-018-21851-7

Elastic net regularized regression for time-series analysis of plasma metabolome stability under sub-optimal freezing condition
Cited by: 15
Author(s): Gerard Bryan Gonzales, Sarah De Saeger
Software Mentions: 6
Published: over 8 years ago

10.1186/s40168-019-0686-6

Longitudinal homogenization of the microbiome between both occupants and the built environment in a cohort of United States Air Force Cadets
Cited by: 32
Author(s): Anukriti Sharma, Miles Richardson, Lauren Cralle, Christopher E. Stamper, Juan P. Maestre, Kelly A. Stearns‐Yoder, Teodor T. Postolache, Katherine L Bates, Kerry A. Kinney, Lisa A. Brenner, Christopher A. Lowry, Jack A. Gilbert, Andrew J. Hoisington
Software Mentions: 6
Published: about 7 years ago

10.3390/plants10061039

Comparative Analysis of Re-Annotated Genes Provides Insight into Evolutionary Divergence and Expressions of Aquaporin Family in Pepper
Cited by: 2
Author(s): Yeon Mi Lee, Geun Young Chae, Min Kyung Kim, Seungill Kim
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0116095

ICan: An Integrated Co-Alteration Network to Identify Ovarian Cancer-Related Genes
Cited by: 9
Author(s): Yuanshuai Zhou, Yongjing Liu, Kening Li, Rui Zhang, Fujun Qiu, Ning Zhao, Yan Xu
Software Mentions: 6
Published: over 11 years ago

10.1038/s41598-017-09834-6

Opposite trends in the genus Monsonia (Geraniaceae): specialization in the African deserts and range expansions throughout eastern Africa
Cited by: 10
Author(s): Sara García-Aloy, Isabel Sanmartín, Gudrun Kadereit, Daniel Vitales, Ana M. Millanes, Cristina Roquet, Pablo Vargas, María Luisa Alarcón, Juan José Aldasoro
Software Mentions: 6
Published: almost 9 years ago

10.1371/journal.pone.0211855

Are hummingbirds generalists or specialists? Using network analysis to explore the mechanisms influencing their interaction with nectar resources
Cited by: 26
Author(s): Claudia I. Rodríguez-Flores, Juan Francisco Ornelas, Susan M. Wethington, María del Coro Arizmendi
Software Mentions: 6
Published: over 7 years ago

10.1002/ece3.5627

How do trees respond to species mixing in experimental compared to observational studies?
Cited by: 7
Author(s): Stephan Kambach, Eric Allan, Simon Bilodeau‐Gauthier, David A. Coomes, Joséphine Haase, Tommaso Jucker, Georges Künstler, Sandra Müller, Charles A. Nock, Alain Paquette, Fons van der Plas, Sophia Ratcliffe, Fabian Roger, Paloma Ruiz‐Benito, Michael Scherer‐Lorenzen, Harald Auge, Olivier Bouriaud, Bastien Castagneyrol, Jonas Dahlgren, Lars Gamfeldt, Hervé Jactel, Gerald Kändler, Julia Koricheva, Aleksi Lehtonen, Bart Muys, Quentin Ponette, Nuri Nurlaila Setiawan, Thomas Peer, Kris Verheyen, M. Zavala, Helge Bruelheide
Software Mentions: 6
Published: almost 7 years ago

10.3389/fmicb.2018.00651

How Does Salinity Shape Bacterial and Fungal Microbiomes of Alnus glutinosa Roots?
Cited by: 53
Author(s): Dominika Thiem, Marcin Gołębiewski, Piotr Hulisz, Agnieszka Piernik, Katarzyna Hrynkiewicz
Software Mentions: 6
Published: about 8 years ago

10.1038/s41598-017-13056-1

A machine-learning heuristic to improve gene score prediction of polygenic traits
Cited by: 63
Author(s): Guillaume Paré, Mao S, Wei Q. Deng
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pcbi.1007939

Iterative point set registration for aligning scRNA-seq data
Cited by: 3
Author(s): Amir Alavi, Ziv Bar‐Joseph
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0024754

Down-Regulating γ-Gliadins in Bread Wheat Leads to Non-Specific Increases in Other Gluten Proteins and Has No Major Effect on Dough Gluten Strength
Cited by: 74
Author(s): Fernando Pistón, Javier Gil-Humanes, Marta Rodríguez-Quijano, Francisco Barro
Software Mentions: 6
Published: almost 15 years ago

10.1371/journal.pone.0170691

Asphyxia in the Newborn: Evaluating the Accuracy of ICD Coding, Clinical Diagnosis and Reimbursement: Observational Study at a Swiss Tertiary Care Center on Routinely Collected Health Data from 2012-2015
Cited by: 18
Author(s): Olga Endrich, Carole Rimle, Marcel Zwahlen, Karen Triep, Luigi Raio, Mathias Nelle
Software Mentions: 6
Published: over 9 years ago

10.1371/journal.pone.0231511

Analyses of cancer incidence and other morbidities in neutron irradiated B6CF1 mice
Cited by: 5
Author(s): Alia Zander, Tatjana Paunesku, Gayle E. Woloschak
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0063274

Crayfish Impact Desert River Ecosystem Function and Litter-Dwelling Invertebrate Communities through Association with Novel Detrital Resources
Cited by: 15
Author(s): Eric K. Moody, John L. Sabo
Software Mentions: 6
Published: about 13 years ago

10.1111/pce.13188

Global spatial analysis of Arabidopsis natural variants implicates 5′UTR splicing ofLATE ELONGATED HYPOCOTYLin responses to temperature
Cited by: 11
Author(s): Allan B. James, Stuart Sullivan, Hugh G. Nimmo
Software Mentions: 6
Published: about 8 years ago

10.1186/s13326-020-00228-8

Identifying disease trajectories with predicate information from a knowledge graph
Cited by: 4
Author(s): Wytze J. Vlietstra, Rein Vos, Marjan van den Akker, Erik M. van Mulligen, Jan A. Kors
Software Mentions: 6
Published: almost 6 years ago

10.1089/cmb.2019.0320

Explainable Deep Learning for Augmentation of Small RNA Expression Profiles
Cited by: 8
Author(s): Jeļena Fiošina, Maksims Fiošins, Stefan Bonn
Software Mentions: 6
Published: over 6 years ago

10.1186/1758-2946-3-51

An investigation into pharmaceutically relevant mutagenicity data and the influence on Ames predictive potential
Cited by: 47
Author(s): Patrick McCarren, Clayton Springer, Lewis Whitehead
Software Mentions: 6
Published: over 14 years ago

10.18632/oncotarget.22636

3D-cultivation of NSCLC cell lines induce gene expression alterations of key cancer-associated pathways and mimic<i>in-vivo</i>conditions
Cited by: 11
Author(s): Gabriele Gamerith, Johannes Michael Rainer, Julia Huber, Hubert Hackl, Zlatko Trajanoski, Stefan Koeck, Edith Lorenz, Johann Kern, Reinhard Kofler, Jens M. Kelm, Heinz Zwierzina, Arno Amann
Software Mentions: 6
Published: over 8 years ago

10.1111/pbi.12834

Conversion of array‐based single nucleotide polymorphic markers for use in targeted genotyping by sequencing in hexaploid wheat (<i>Triticum aestivum</i>)
Cited by: 21
Author(s): Amanda Burridge, Paul Wilkinson, Mark Winfield, Gary Barker, Alexandra M. Allen, Jane A. Coghill, Christy Waterfall, Keith J. Edwards
Software Mentions: 6
Published: over 8 years ago

10.3390/healthcare9030317

Automatic Evaluation of Heart Condition According to the Sounds Emitted and Implementing Six Classification Methods
Cited by: 5
Author(s): Manuel A. Soto-Murillo, Jorge I. Galván-Tejada, Carlos E. Galván-Tejada, José M. Celaya-Padilla, Huizilopoztli Luna-García, Rafael Magallanes‐Quintanar, Tania A. Gutiérrez-García, Hamurabi Gamboa-Rosales
Software Mentions: 6
Published: over 5 years ago

10.3389/fpls.2021.613059

Identification of ABA-Mediated Genetic and Metabolic Responses to Soil Flooding in Tomato (Solanum lycopersicum L. Mill)
Cited by: 24
Author(s): Vicent Arbona, Miguel González-Guzmán, Zara Pitarch, José Tomás Matus, Héctor Candela, José L. Rambla, Antonio Granell, Aurelio Gómez‐Cadenas
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0206862

Optimal intensive care outcome prediction over time using machine learning
Cited by: 64
Author(s): Christopher Meiring, Abhishek Dixit, Steve Harris, Niall MacCallum, David Brealey, Peter Watkinson, Andrew Jones, Simon Ashworth, Richard Beale, Stephen Brett, Mervyn Singer, Ari Ercole
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pntd.0008417

Aquatic macrophytes and macroinvertebrate predators affect densities of snail hosts and local production of schistosome cercariae that cause human schistosomiasis
Cited by: 22
Author(s): Christopher J. E. Haggerty, Sidy Bakhoum, David J. Civitello, Giulio A. De Leo, Nicolas Jouanard, Raphael A. Ndione, Justin V. Remais, Gilles Riveau, Simon Senghor, Susanne H. Sokolow, Salif Sow, Caitlin Wolfe, Chelsea L. Wood, Isabel J. Jones, Andrew J. Chamberlin, Jason R. Rohr
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pntd.0009061

Outcomes from international field trials with Male Aedes Sound Traps: Frequency-dependent effectiveness in capturing target species in relation to bycatch abundance
Cited by: 8
Author(s): Kyran M. Staunton, Donovan Leiva, Alvaro Cruz, Joelyn Goi, Carlos Arisqueta, Jianyi Liu, Mark Desnoyer, Paul Howell, Francia Espinosa, Azael Che-Mendoza, Stephan Karl, Jacob E. Crawford, Xiang Wang, Pablo Manrique-Saide, Nicole L. Achee, John P. Grieco, Scott A. Ritchie, Thomas R. Burkot, Nigel Snoad
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pbio.3001114

The plant metabolome guides fitness-relevant foraging decisions of a specialist herbivore
Cited by: 13
Author(s): Ricardo A. R. Machado, Vanitha Theepan, Christelle Robert, Tobias Züst, Lingfei Hu, Qi Su, Bernardus C. J. Schimmel, Matthias Erb
Software Mentions: 6
Published: over 5 years ago

10.1534/g3.116.027045

Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite <i>Tolypocladium ophioglossoides</i>
Cited by: 20
Author(s): C. Alisha Quandt, Yanming Di, Justin Elser, Pankaj Jaiswal, Joseph W. Spatafora
Software Mentions: 6
Published: over 10 years ago

10.1007/s00442-021-05022-6

Nightly torpor use in response to weather conditions and individual state in an insectivorous bat
Cited by: 5
Author(s): Mari Aas Fjelldal, Jonathan Wright, Clare Stawski
Software Mentions: 6
Published: almost 5 years ago

10.3390/plants10071324

Heterogeneous Impact of Water Warming on Exotic and Native Submerged and Emergent Plants in Outdoor Mesocosms
Cited by: 0
Author(s): Morgane Gillard, Jean-Pierre Caudal, Carole Deleu, Gabrielle Thiébaut
Software Mentions: 6
Published: about 5 years ago

10.7717/peerj.5669

From the cage to the wild: introductions of Psittaciformes to Puerto Rico
Cited by: 10
Author(s): Wilfredo Falcón, Raymond L. Tremblay
Software Mentions: 6
Published: over 7 years ago

10.3390/plants10050988

Growing and Flowering in a Changing Climate: Effects of Higher Temperatures and Drought Stress on the Bee-Pollinated Species Impatiens glandulifera Royle
Cited by: 13
Author(s): Charlotte Descamps, Najet Boubnan, Anne–Laure Jacquemart, Muriel Quinet
Software Mentions: 6
Published: about 5 years ago

10.1038/s41396-021-00939-5

Competition between strains of Borrelia afzelii in the host tissues and consequences for transmission to ticks
Cited by: 7
Author(s): Dolores Genné, Marika Rossel, Anouk Sarr, Florian Battilotti, Olivier Rais, Ryan O. M. Rego, Maarten J. Voordouw
Software Mentions: 6
Published: over 5 years ago

10.1128/mSystems.00398-20

System Performance Corresponding to Bacterial Community Succession after a Disturbance in an Autotrophic Nitrogen Removal Bioreactor
Cited by: 3
Author(s): Hsiao Pei Lu, Yung Hsien Shao, Jer Horng Wu, Chih‐hao Hsieh
Software Mentions: 6
Published: almost 6 years ago

10.3390/diagnostics11050887

A Comprehensive Machine Learning Framework for the Exact Prediction of the Age of Onset in Familial and Sporadic Alzheimer’s Disease
Cited by: 3
Author(s): Jorge I. Vélez, Luiggi A. Samper, Mauricio Arcos-Holzinger, Lady G. Espinosa, Mario A. Isaza-Ruget, Francisco Lopera, Mauricio Arcos‐Burgos
Software Mentions: 6
Published: about 5 years ago

10.3390/ijerph18094543

A Study of the Effects of the COVID-19 Pandemic on the Experience of Back Pain Reported on Twitter® in the United States: A Natural Language Processing Approach
Cited by: 13
Author(s): Krzysztof Fiok, Waldemar Karwowski, Edgar Gutiérrez, Maham Saeidi, Awad M. Aljuaid, Mohammad Reza Davahli, Redha Taı̈ar, Tadeusz Marek, Ben D. Sawyer
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-020-65210-x

Flexibility of little auks foraging in various oceanographic features in a changing Arctic
Cited by: 21
Author(s): Dariusz Jakubas, Katarzyna Wojczulanis‐Jakubas, Lech Iliszko, Dorota Kidawa, Rafał Boehnke, Katarzyna Błachowiak‐Samołyk, Lech Stempniewicz
Software Mentions: 6
Published: about 6 years ago

10.1186/s12931-019-1144-5

Mass spectrometry imaging as a tool for evaluating the pulmonary distribution of exogenous surfactant in premature lambs
Cited by: 7
Author(s): Riccardo Zecchi, Pietro Franceschi, Laura Tigli, Francesca Ricci, Francesca Boscaro, Barbara Pioselli, Valentina Mileo, Xabier Murgia, Federico Bianco, Fabrizio Salomone, Augusto F. Schmidt, Noah H. Hillman, Matthew W. Kemp, Alan H. Jobe
Software Mentions: 6
Published: almost 7 years ago

10.1007/s00436-020-06666-8

Research paper on abiotic factors and their influence on Ixodes ricinus activity—observations over a two-year period at several tick collection sites in Germany
Cited by: 14
Author(s): Jörn Gethmann, Bernd Hoffmann, Elisa Kasbohm, Jochen Süß, Birgit Habedank, Franz Josef Conraths, Martin Beer, Christine Klaus
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-021-91730-1

Trophic niches of native and nonnative fishes along a river-reservoir continuum
Cited by: 8
Author(s): Casey A. Pennock, Zachary T. Ahrens, Mark C. McKinstry, Phaedra Budy, Keith B. Gido
Software Mentions: 6
Published: about 5 years ago

10.1186/s13046-021-02034-1

Immuno-genomic classification of colorectal cancer organoids reveals cancer cells with intrinsic immunogenic properties associated with patient survival
Cited by: 14
Author(s): Eun Jeong Cho, Minsuh Kim, Daum Jo, Jihye Kim, Ji-Hye Oh, Hee Chul Chung, Sun-Hye Lee, Deokhoon Kim, Sung Chun, Jihun Kim, Hyeonjin Lee, Tae Won Kim, Chang Sik Yu, Chang‐Keun Sung, Se Jin Jang
Software Mentions: 6
Published: almost 5 years ago

10.3390/ijms22168482

Multicellular Human Cardiac Organoids Transcriptomically Model Distinct Tissue-Level Features of Adult Myocardium
Cited by: 17
Author(s): Charles M. Kerr, Dylan Richards, Donald R. Menick, Kristine Y. DeLeon‐Pennell, Ying Mei
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0233872

Alpha-, beta-, and gamma-diversity of bacteria varies across habitats
Cited by: 83
Author(s): Kendra E. Walters, Jennifer B. H. Martiny
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12967-017-1201-0

Whole blood gene expression in adolescent chronic fatigue syndrome: an exploratory cross-sectional study suggesting altered B cell differentiation and survival
Cited by: 46
Author(s): Chinh Bkrong Nguyen, Lene Alsøe, Jessica M. Lindvall, Dag Sulheim, Even Fagermoen, Anette Winger, Mari Kaarbø, Hilde Nilsen, Vegard Bruun Wyller
Software Mentions: 6
Published: about 9 years ago

10.1186/s12859-017-1808-4

QNB: differential RNA methylation analysis for count-based small-sample sequencing data with a quad-negative binomial model
Cited by: 36
Author(s): Lian Liu, Shao Wu Zhang, Yufei Huang, Jia Meng
Software Mentions: 6
Published: almost 9 years ago

10.1186/s13072-020-00379-z

DNA methylation differs extensively between strains of the same geographical origin and changes with age in Daphnia magna
Cited by: 15
Author(s): Jack Hearn, Fiona A. Plenderleith, Tom J. Little
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-020-65223-6

Using an Innovation Arena to compare wild-caught and laboratory Goffin’s cockatoos
Cited by: 19
Author(s): Theresa Rößler, Berenika Mioduszewska, Mark O’Hara, Ludwig Huber, Dewi M. Prawiradilaga, Alice M. I. Auersperg
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0240010

Framing COVID-19: How we conceptualize and discuss the pandemic on Twitter
Cited by: 135
Author(s): Philipp Wicke, Marianna Bolognesi
Software Mentions: 6
Published: almost 6 years ago

10.3390/ijms22115814

Genomic Characterization of Cisplatin Response Uncovers Priming of Cisplatin-Induced Genes in a Resistant Cell Line
Cited by: 7
Author(s): Hadar Golan Berman, Pooja Chauhan, Shira Shalev, Hiba Hassanain, Avital Parnas, Sheera Adar
Software Mentions: 6
Published: about 5 years ago

10.3390/ijms22094531

Knockdown of the Ribosomal Protein eL38 in HEK293 Cells Changes the Translational Efficiency of Specific Genes
Cited by: 4
Author(s): Alexander V. Gopanenko, Alena V. Kolobova, Alexey E. Tupikin, Мarsel R. Kabilov, Alexey A. Malygin, Г. Г. Карпова
Software Mentions: 6
Published: about 5 years ago

10.1093/molbev/msab079

Rubisco Adaptation Is More Limited by Phylogenetic Constraint Than by Catalytic Trade-off
Cited by: 28
Author(s): Jacques W. Bouvier, David Emms, Timothy Rhodes, Jai S Bolton, Amelia Brasnett, Alice Eddershaw, Jochem Nielsen, A Unitt, Spencer M. Whitney, Steven Kelly
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-019-56049-y

Availability of orchid mycorrhizal fungi on roadside trees in a tropical urban landscape
Cited by: 17
Author(s): Muhammad Izuddin, Amrita Srivathsan, Ai‐Lan Lee, Tim Wing Yam, Edward L. Webb
Software Mentions: 6
Published: over 6 years ago