10.3389/fmicb.2017.01379

Cutaneous Microbial Community Variation across Populations of Eastern Hellbenders (Cryptobranchus alleganiensis alleganiensis)
Cited by: 25
Author(s): Obed Hernández‐Gómez, Jason T. Hoverman, Rod N. Williams
Software Mentions: 6
Published: almost 9 years ago

10.1186/s12711-019-0453-y

Machine learning applied to transcriptomic data to identify genes associated with feed efficiency in pigs
Cited by: 24
Author(s): M. Piles, Carlos Fernández-Lozano, María Velasco-Galilea, Olga González‐Rodríguez, Juan Pablo Sánchez, D. Torrallardona, María Ballester, Raquel Quintanilla
Software Mentions: 6
Published: over 7 years ago

10.1128/mBio.01714-20

Repetitive Elements Contribute to the Diversity and Evolution of Centromeres in the Fungal Genus <i>Verticillium</i>
Cited by: 20
Author(s): Michael Seidl, Holger Kramer, David E. Cook, Gabriel Lorencini Fiorin, Grardy C. M. van den Berg, Luigi Faino, B.P.H.J. Thomma
Software Mentions: 6
Published: over 5 years ago

10.1155/2021/9921466

A Novel Immune-Related lncRNA-Based Model for Survival Prediction in Clear Cell Renal Cell Carcinoma
Cited by: 9
Author(s): Zedan Zhang, Yanlin Tang, Yanjun Liu, Hongkai Zhuang, Enyu Lin, Lu Xie, Xiaoqiang Feng, Kaiwen Tian, Jiayi Zeng, Jiumin Liu, Yuming Yu
Software Mentions: 6
Published: about 5 years ago

10.12688/wellcomeopenres.15115.1

Single-cell transcriptome analysis of CD8+ T-cell memory inflation
Cited by: 7
Author(s): Andrew J. Highton, Madeleine E Zinser, Lian Ni Lee, Claire Hutchings, Catherine de Lara, Chansavath Phetsouphanh, Christian Willberg, Claire L. Gordon, Paul Klenerman, Emanuele Marchi
Software Mentions: 6
Published: about 7 years ago

10.1038/s41598-019-44034-4

Transcript expression profiling in two contrasting cultivars and molecular cloning of a SKP-1 like gene, a component of SCF-ubiquitin proteasome system from mungbean Vigna radiate L.
Cited by: 8
Author(s): Nandita Bharadwaj, Sharmistha Barthakur, Akash Deep Biswas, Monoj Kumar Das, Manpreet Kour, Anand Ramteke, Nirmali Gogoi
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pgen.1007788

Single-cell RNA-sequencing reveals transcriptional dynamics of estrogen-induced dysplasia in the ovarian surface epithelium
Cited by: 16
Author(s): Nhung Vuong, David P. Cook, Laura A. Forrest, Lauren E. Carter, Pascale Robineau-Charette, Joshua M. Kofsky, Kendra M. Hodgkinson, Barbara C. Vanderhyden
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-019-45714-x

Transcriptome Analysis of Long-lived Drosophila melanogaster E(z) Mutants Sheds Light on the Molecular Mechanisms of Longevity
Cited by: 30
Author(s): Alexey Moskalev, Mikhail Shaposhnikov, Nadezhda Zemskaya, Liubov Koval, Eugenia V. Schegoleva, Zulfiya G. Guvatova, George S. Krasnov, Ilya Solovev, Maksim A. Sheptyakov, Alex Zhavoronkov, Anna V. Kudryavtseva
Software Mentions: 6
Published: about 7 years ago

10.3389/fpls.2018.01212

A Bioinformatics Pipeline for the Analysis and Target Prediction of RNA Effectors in Bidirectional Communication During Plant–Microbe Interactions
Cited by: 12
Author(s): Silvia Zanini, Ena Šečić, Lukas Jelonek, Karl-Heinz Kögel
Software Mentions: 6
Published: almost 8 years ago

10.1038/s41396-020-00844-3

Soil microbial legacies differ following drying-rewetting and freezing-thawing cycles
Cited by: 45
Author(s): Annelein Meisner, L. Basten Snoek, Joseph Nesme, Elizabeth Dent, Samuel Jacquiod, Aimée T. Classen, Anders Priemé
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2021.694933

Large-Section Histopathology Can Better Indicate the Immune Microenvironment and Predict the Prognosis of Pancreatic Ductal Adenocarcinoma Than Small-Section Histopathology
Cited by: 0
Author(s): Guiling Ding, Meng Guo, Yuchen Yang, Chen Rei Sun, Shaofang Wu, Xingchen Liu, Jin Wang, Hui Jiang, Yanfang Liu, Jianming Zheng
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12935-021-01804-3

Prognostic and predictive value of FCER1G in glioma outcomes and response to immunotherapy
Cited by: 11
Author(s): Houshi Xu, Qiangqiang Zhu, Lan Tang, Junkun Jiang, Huiwen Yuan, Anke Zhang, Meiqing Lou
Software Mentions: 6
Published: over 5 years ago

10.3389/fcell.2021.690167

Sex-Specific Development in Haplodiploid Honeybee Is Controlled by the Female-Embryo-Specific Activation of Thousands of Intronic LncRNAs
Cited by: 0
Author(s): Miao Wang, Dong Chen, Huoqing Zheng, Luping Zhao, Xiao‐Feng Xue, Fengyun Yu, Yu Zhang, Chao Cheng, Qingsheng Niu, Shuai Wang, Yi Zhang, Liming Wu
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pgen.1008546

Chromatin accessibility established by Pou5f3, Sox19b and Nanog primes genes for activity during zebrafish genome activation
Cited by: 53
Author(s): Máté Pálfy, G Schulze, Eivind Valen, Nadine L. Vastenhouw
Software Mentions: 6
Published: over 6 years ago

10.1016/j.celrep.2020.107628

Single-Cell RNA Sequencing Reveals a Dynamic Stromal Niche That Supports Tumor Growth
Cited by: 156
Author(s): Sarah Davidson, Mirjana Efremova, Angela Riedel, Bidesh Mahata, Jhuma Pramanik, Jani Huuhtanen, Gozde Kar, Roser Vento‐Tormo, Tzachi Hagai, Xi Chen, Muzlifah Haniffa, Jacqueline D. Shields, Sarah A. Teichmann
Software Mentions: 6
Published: about 6 years ago

10.3389/fmicb.2018.02533

Cervicovaginal Fungi and Bacteria Associated With Cervical Intraepithelial Neoplasia and High-Risk Human Papillomavirus Infections in a Hispanic Population
Cited by: 57
Author(s): Filipa Godoy-Vitorino, Josefina Romaguera, Chunyu Zhao, Daniela Vargas-Robles, Gilmary Ortiz-Morales, Frances Vázquez-Sánchez, María M. Sánchez-Vázquez, Manuel de la Garza-Casillas, Magaly Martínez‐Ferrer, James R. White, Kyle Bittinger, Maria Gloria Domínguez-Bello, Martin J. Blaser
Software Mentions: 6
Published: over 7 years ago

10.1002/cam4.3859

Identification of an individualized RNA binding protein‐based prognostic signature for diffuse large B‐cell lymphoma
Cited by: 6
Author(s): Yuanyang Xie, Ximei Luo, Haiqing He, Tao Pan, Yizi He
Software Mentions: 6
Published: over 5 years ago

10.7554/eLife.54655

Hfq CLASH uncovers sRNA-target interaction networks linked to nutrient availability adaptation
Cited by: 58
Author(s): Ira Alexandra Iosub, Rob W. van Nues, Stuart McKellar, Karen Jule Nieken, Marta Marchioretto, Brandon Sy, Jai J. Tree, Gabriella Viero, Sander Granneman
Software Mentions: 6
Published: about 6 years ago

10.7554/eLife.09800

Cell type-specific transcriptomics of hypothalamic energy-sensing neuron responses to weight-loss
Cited by: 177
Author(s): Fredrick E. Henry, Ken Sugino, Adam Tozer, Tiago Branco, Scott M. Sternson
Software Mentions: 6
Published: almost 11 years ago

10.1371/journal.pone.0077776

Extension of Life Span by Impaired Glucose Metabolism in Caenorhabditis elegans Is Accompanied by Structural Rearrangements of the Transcriptomic Network
Cited by: 20
Author(s): Stefan Priebe, Uwe Menzel, Kim Zarse, Marco Groth, Matthias Platzer, Michael Ristow, Reinhard Guthke
Software Mentions: 6
Published: over 12 years ago

10.1371/journal.pone.0029685

A Powerful Method for Transcriptional Profiling of Specific Cell Types in Eukaryotes: Laser-Assisted Microdissection and RNA Sequencing
Cited by: 104
Author(s): Marc W. Schmid, Anja Schmidt, Ulrich C. Klostermeier, Matthias Barann, Philip Rosenstiel, Ueli Grossniklaus
Software Mentions: 6
Published: over 14 years ago

10.3389/fmicb.2018.02681

Ice Nucleation Activity and Aeolian Dispersal Success in Airborne and Aquatic Microalgae
Cited by: 36
Author(s): Sylvie V. M. Tesson, Tina Šantl-Temkiv
Software Mentions: 6
Published: over 7 years ago

10.3389/fmicb.2019.03077

A High-Throughput Interbacterial Competition Screen Identifies ClpAP in Enhancing Recipient Susceptibility to Type VI Secretion System-Mediated Attack by Agrobacterium tumefaciens
Cited by: 12
Author(s): Hsiao‐Han Lin, Manda Yu, Manoj Kumar Sriramoju, Shang-Te Danny Hsu, Chi-Te Liu, Erh‐Min Lai
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-021-87829-0

GWAS analysis reveals distinct pathogenicity profiles of Australian Parastagonospora nodorum isolates and identification of marker-trait-associations to septoria nodorum blotch
Cited by: 7
Author(s): H. Phan, Eiko Furuki, Lukas Hunziker, Kasia Rybak, Kar‐Chun Tan
Software Mentions: 6
Published: about 5 years ago

10.1093/gbe/evu149

Small but Powerful, the Primary Endosymbiont of Moss Bugs, Candidatus Evansia muelleri, Holds a Reduced Genome with Large Biosynthetic Capabilities
Cited by: 33
Author(s): Diego Santos-García, Amparo Latorre, Andrés Moya, George Gibbs, Viktor Hartung, Konrad Dettner, Stefan Martin Kuechler, Francisco J. Silva
Software Mentions: 6
Published: about 12 years ago

10.1093/biosci/biw175

Using Social Network Measures in Wildlife Disease Ecology, Epidemiology, and Management
Cited by: 101
Author(s): Matthew J. Silk, Darren P. Croft, Richard J. Delahay, David J. Hodgson, Mike Boots, Nicola Weber, Robbie A. McDonald
Software Mentions: 6
Published: over 9 years ago

10.3390/ijms21197407

LINC00885 a Novel Oncogenic Long Non-Coding RNA Associated with Early Stage Breast Cancer Progression
Cited by: 14
Author(s): Martı́n C. Abba, Romina Canzoneri, Agustina Gurruchaga, Jae-Ho Lee, Pradeep Tatineni, Hyunsuk Kil, Ezequiel Lacunza, C. Marcelo Aldaz
Software Mentions: 6
Published: over 5 years ago

10.3389/fpsyt.2021.697127

Daily-Life Social Experiences as a Potential Mediator of the Relationship Between Parenting and Psychopathology in Adolescence
Cited by: 6
Author(s): Robin Achterhof, Olivia J. Kirtley, Maude Schneider, Ginette Lafit, Noëmi Hagemann, Karlijn Susanna Francisca Maria Hermans, Anu P. Hiekkaranta, Aleksandra Lecei, Inez Myin-Germeys
Software Mentions: 6
Published: almost 5 years ago

10.15252/msb.20209684

Genetic regulation of liver lipids in a mouse model of insulin resistance and hepatic steatosis
Cited by: 14
Author(s): Frode Norheim, Karthickeyan Chella Krishnan, Thomas Bjellaas, Laurent Vergnes, Calvin Pan, Brian W. Parks, Yan Meng, Jennifer M. Lang, James A. Ward, Karen Reue, Margarete Mehrabian, Thomas E. Gundersen, Miklós Péterfy, Knut Tomas Dalen, Christian A. Drevon, Simon T. Hui, Aldons J. Lusis, Marcus M. Seldin
Software Mentions: 6
Published: over 5 years ago

10.1093/gigascience/giab058

Scalable analysis of multi-modal biomedical data
Cited by: 3
Author(s): Jaclyn Smith, Yao Shi, Michael Benedikt, Miloš Nikolić
Software Mentions: 6
Published: almost 5 years ago

10.1186/s40168-017-0389-9

Cropping practices manipulate abundance patterns of root and soil microbiome members paving the way to smart farming
Cited by: 340
Author(s): Kyle Hartman, Marcel G. A. van der Heijden, Raphaël Wittwer, Samiran Banerjee, Jean Claude Walser, Klaus Schlaeppi
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pcbi.1009071

CytoPy: An autonomous cytometry analysis framework
Cited by: 8
Author(s): Ross J. Burton, Raya Ahmed, Simone Cuff, Sarah Baker, Andreas Artemiou, Matthias Eberl
Software Mentions: 6
Published: about 5 years ago

10.1186/s13550-020-00744-9

Repeatability of two semi-automatic artificial intelligence approaches for tumor segmentation in PET
Cited by: 12
Author(s): Elisabeth Pfaehler, Liesbet Mesotten, Gem Kramer, Michiel Thomeer, Karolien Vanhove, Johan de Jong, Peter Adriaensens, Otto S. Hoekstra, Ronald Boellaard
Software Mentions: 6
Published: over 5 years ago

10.1186/s40644-021-00408-4

High resolution MRI-based radiomic nomogram in predicting perineural invasion in rectal cancer
Cited by: 17
Author(s): Yan-Song Yang, Yong-Juan Qiu, Gengbin Zheng, Hai‐Peng Gong, Yubin Ge, Yifei Zhang, Feng Feng, Yuetao Wang
Software Mentions: 6
Published: about 5 years ago

10.1016/j.dib.2020.105767

BEHACOM - a dataset modelling users’ behaviour in computers
Cited by: 2
Author(s): Pedro Miguel Sánchez Sánchez, José María Jorquera Valero, Mattia Zago, Alberto Huertas Celdrán, Lorenzo Fernández Maimó, Eduardo López Bernal, Sergio López Bernal, Javier Martínez Valverde, Pantaleone Nespoli, Javier Pastor-Galindo, Ángel Luis Perales Gómez, Manuel Gil Pérez, Gregorio Martínez Pérez
Software Mentions: 6
Published: almost 6 years ago

10.7150/ijbs.62553

DDX39 as a predictor of clinical prognosis and immune checkpoint therapy efficacy in patients with clear cell renal cell carcinoma
Cited by: 11
Author(s): Yewei Bao, Aimin Jiang, Kai Dong, Xinxin Gan, Wenliang Gong, Zhenjie Wu, Bing Liu, Yi Bao, Jie Wang, Linhui Wang
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-018-28233-z

Moth oviposition shapes the species-specific transcriptional and phytohormonal response of Nicotiana attenuata to larval feeding
Cited by: 11
Author(s): Sylvia Drok, Michele Bandoly, Sandra Stelzer, Tobias Lortzing, Anke Steppuhn
Software Mentions: 6
Published: almost 8 years ago

10.1128/mSystems.00423-19

Network Analysis of the Papaya Orchard Virome from Two Agroecological Regions of Chiapas, Mexico
Cited by: 25
Author(s): Ricardo I. Alcalá-Briseño, Kena Casarrubias-Castillo, Diana López-Ley, Karen A. Garrett, Laura Silva-Rosales
Software Mentions: 6
Published: over 6 years ago

10.1186/s40104-020-00465-y

Effects of supplementation of green tea extract on the milk performance of peripartal dairy cows and the expression of stress response genes in the liver
Cited by: 6
Author(s): Denise K. Geßner, Corinna Brock, Lena M. Hof, Erika Most, Christian Koch, Klaus Eder
Software Mentions: 6
Published: about 6 years ago

10.1038/s41598-020-65089-8

Immunorthodontics: in vivo gene expression of orthodontic tooth movement
Cited by: 28
Author(s): Yehuda Klein, Omer Fleissig, David Polak, Yechezkel Barenholz, Ofer Mandelboim, Stella Chaushu
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pntd.0009500

Lay attitudes and misconceptions and their implications for the control of brucellosis in an agro-pastoral community in Kilombero district, Tanzania
Cited by: 6
Author(s): Caroline M. Mburu, Salome A. Bukachi, Kathrin H. Tokpa, Gilbert Fokou, Khamati Shilabukha, Mangi J. Ezekiel, Bassirou Bonfoh, Rudovick Kazwala, Katharina Kreppel
Software Mentions: 6
Published: about 5 years ago

10.1186/s12935-020-01635-8

A multi-parametric prognostic model based on clinical features and serological markers predicts overall survival in non-small cell lung cancer patients with chronic hepatitis B viral infection
Cited by: 4
Author(s): Shulin Chen, Hanqing Huang, Yijun Liu, Changchun Lai, Songguo Peng, Lei Zhou, Hao Chen, Yi‐Wei Xu, Xia He
Software Mentions: 6
Published: over 5 years ago

10.1186/s13148-020-00942-1

Serious neonatal morbidities are associated with differences in DNA methylation among very preterm infants
Cited by: 18
Author(s): Todd M. Everson, T. Michael O’Shea, Amber Burt, Karen Hermetz, Brian S. Carter, Jennifer Helderman, Julie A. Hofheimer, Elisabeth C. McGowan, Charles R. Neal, Steven L. Pastyrnak, Lynne M. Smith, Antoine Soliman, Sheri A. DellaGrotta, Lynne M. Dansereau, Jamés F. Padbury, Barry M. Lester, Carmen J. Marsit
Software Mentions: 6
Published: over 5 years ago

10.1186/s13046-019-1372-z

Cytolytic activity correlates with the mutational burden and deregulated expression of immune checkpoints in colorectal cancer
Cited by: 61
Author(s): Apostolos Zaravinos, Constantinos Roufas, Majdi Nagara, Beatriz de Lucas, Maria Oblovatskaya, Christodoulos Efstathiades, Christos Dimopoulos, Georgios D. Ayiomamitis
Software Mentions: 6
Published: almost 7 years ago

10.3389/fgene.2021.665153

Comparative Analysis of the Circular Transcriptome in Muscle, Liver, and Testis in Three Livestock Species
Cited by: 9
Author(s): Annie Robic, Chloé Cerutti, Christa Kühn, Thomas Faraut
Software Mentions: 6
Published: about 5 years ago

10.1093/g3journal/jkab248

Harnessing multivariate, penalized regression methods for genomic prediction and QTL detection of drought-related traits in grapevine
Cited by: 5
Author(s): Charlotte Brault, Agnès Doligez, Le Cunff, Aude Coupel‐Ledru, Thierry Simonneau, Julien Chiquet, Patrice This, Timothée Flutre
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-018-20515-w

Exploring coral microbiome assemblages in the South China Sea
Cited by: 24
Author(s): Chunye Lin, Ren Mao Tian, Guowei Zhou, Haoya Tong, Yue Him Wong, Weipeng Zhang, Apple Pui Yi Chui, James Y. Xie, Jian‐Wen Qiu, Put O. Ang, Sheng Liu, Hui Huang, Pei‐Yuan Qian
Software Mentions: 6
Published: over 8 years ago

10.1002/1878-0261.12965

The ZEB2‐dependent EMT transcriptional programme drives therapy resistance by activating nucleotide excision repair genes <i>ERCC1</i> and <i>ERCC4</i> in colorectal cancer
Cited by: 14
Author(s): Rahul Sreekumar, Hajir AlSaihati, Muhammad Emaduddin, Karwan A. Moutasim, Massimiliano Mellone, Ashish Patel, Seval Kılıç, Metin Çetįn, Sule Erdemir, Marta Salgado Navio, Maria A. Lopez, Nathan Curtis, Tamer Yağcı, John Primrose, Brendan D. Price, Geert Berx, Gareth J. Thomas, Eugene Tulchinsky, Alex H. Mirnezami, Emre Sayan
Software Mentions: 6
Published: about 5 years ago

10.3389/fped.2019.00566

Trajectories of Health-Related Quality of Life and HbA1c Values of Children and Adolescents With Diabetes Mellitus Type 1 Over 6 Months: A Longitudinal Observational Study
Cited by: 6
Author(s): Kristin Fischer, Felix Fischer, Dana Barthel, Christiane Otto, Ute Thyen, Martine Klein, Ottó Walter, Ulrike Ravens‐Sieberer, Matthias Rose, Sandra Nolte
Software Mentions: 6
Published: over 6 years ago

10.1093/molbev/msy147

Species Tree Inference with BPP Using Genomic Sequences and the Multispecies Coalescent
Cited by: 246
Author(s): Tomáš Flouri, Xiyun Jiao, Bruce Rannala, Ziheng Yang
Software Mentions: 6
Published: almost 8 years ago

10.1186/s40594-018-0120-9

Supporting instructional change in mathematics: using social network analysis to understand online support processes following professional development workshops
Cited by: 15
Author(s): Charles N. Hayward, Sandra L. Laursen
Software Mentions: 6
Published: about 8 years ago

10.12688/wellcomeopenres.14073.3

ANIMA: Association network integration for multiscale analysis
Cited by: 4
Author(s): Armin Deffur, Robert J. Wilkinson, Bongani M. Mayosi, Nicola Mulder
Software Mentions: 6
Published: over 7 years ago

10.1073/pnas.2104315118

Global range expansion history of pepper (<i>Capsicum</i>spp.) revealed by over 10,000 genebank accessions
Cited by: 39
Author(s): Pasquale Tripodi, M. Timothy Rabanus‐Wallace, Lorenzo Barchi, Sandip M. Kale, Salvatore Esposito, Alberto Acquadro, Roland Schafleitner, Maarten van Zonneveld, Jaime Prohens, María José Díez, Andreas Börner, Jérémy Salinier, Bernard Caromel, Arnaud Bovy, Filiz Boyaci, Gancho Pasev, Ronny Brandt, Axel Himmelbach, Ezio Portis, Richard Finkers, Sergio Lanteri, Ilan Paran, Véronique Lefebvre, Giovanni Giuliano, Nils Stein
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41392-020-00437-8

CREBBP/EP300 mutations promoted tumor progression in diffuse large B-cell lymphoma through altering tumor-associated macrophage polarization via FBXW7-NOTCH-CCL2/CSF1 axis
Cited by: 72
Author(s): Yan‐Jiun Huang, Kedan Cai, Pengpeng Xu, Li Wang, Chuanxin Huang, Ying Fang, Shu Cheng, Xiao Jian Sun, Feng Liu, Jinyan Huang, Mengmeng Ji, Wei‐Li Zhao
Software Mentions: 6
Published: over 5 years ago

10.3389/fcell.2020.582320

Microbiome Profiling Reveals Gut Dysbiosis in the Metabotropic Glutamate Receptor 5 Knockout Mouse Model of Schizophrenia
Cited by: 15
Author(s): Carolina Gubert, Geraldine Kong, Volkan Uzungil, Ariel M Zeleznikow-Johnston, Emma L. Burrows, Thibault Renoir, Anthony J Hannan
Software Mentions: 6
Published: over 5 years ago

10.3390/pathogens10081063

Gut Microbiota in Military International Travelers with Doxycycline Malaria Prophylaxis: Towards the Risk of a Simpson Paradox in the Human Microbiome Field
Cited by: 1
Author(s): Émilie Javelle, Aurélie Mayet, Matthieu Million, Anthony Levasseur, Rodrigue S. Allodji, Catherine Marimoutou, Chrystel Lavagna, Jérôme Desplans, Pierre-Édouard Fournier, Didier Raoult, Gaëtan Texier
Software Mentions: 6
Published: almost 5 years ago

10.1038/s41598-018-25927-2

Helicobacter pylori-infected C57BL/6 mice with different gastrointestinal microbiota have contrasting gastric pathology, microbial and host immune responses
Cited by: 24
Author(s): Zhongming Ge, Alexander Sheh, Yan Feng, Sureshkumar Muthupalani, Lili Ge, Chuanwu Wang, Susanna Kurnick, Anthony Mannion, Mark T. Whary, James G. Fox
Software Mentions: 6
Published: about 8 years ago

10.3389/fnins.2021.667011

Benchmarking Highly Parallel Hardware for Spiking Neural Networks in Robotics
Cited by: 5
Author(s): Lea Steffen, Robin Koch, Stefan Ulbrich, Sven Nitzsche, Arne Roennau, Rüdiger Dillmann
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-018-23989-w

A large-scale survey of the postmortem human microbiome, and its potential to provide insight into the living health condition
Cited by: 90
Author(s): Jennifer L. Pechal, Carl J. Schmidt, Heather R. Jordan, M. Eric Benbow
Software Mentions: 6
Published: about 8 years ago

10.1186/s13073-021-00939-2

Identification of TBX15 as an adipose master trans regulator of abdominal obesity genes
Cited by: 17
Author(s): David Z. Pan, Min‐Hua Zong, Caroline Comenho, Sandhya Rajkumar, Amogha Koka, Seung Hyuk Lee, Marcus Alvarez, Dorota Kaminska, Arthur Ko, Janet S. Sinsheimer, Karen L. Mohlke, Nicholas Mancuso, Linda Liliana Muñóz-Hernández, Miguel Francisco Herrera-Hernández, Marı́a Teresa Tusié-Luna, Carlos A. Aguilar-Salinas, Kirsi H. Pietiläinen, Jussi Pihlajamäki, Markku Laakso, Kristina M. Garske, Päivi Pajukanta
Software Mentions: 6
Published: almost 5 years ago

10.1111/febs.15578

Genome‐wide postnatal changes in immunity following fetal inflammatory response
Cited by: 0
Author(s): DC Costa, Núria Bonet, Amanda Solé, José Manuel González de Aledo-Castillo, Eduard Sabidó, Ferrán Casals, Carlota Rovira, Alfons Nadal, J. L. Marı́n, Teresa Cobo, Robert Castelo
Software Mentions: 6
Published: over 5 years ago

10.7554/eLife.58407

Intestinal microbiology shapes population health impacts of diet and lifestyle risk exposures in Torres Strait Islander communities
Cited by: 5
Author(s): Fredrick M. Mobegi, Lex E. X. Leong, Fintan Thompson, Sean Taylor, Linton Harriss, Jocelyn M. Choo, Steven Taylor, Steve Wesselingh, Robyn McDermott, Kerry L. Ivey, Geraint B. Rogers
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2020.01459

Fibrinogen/Albumin Ratio Index Is an Independent Prognosis Predictor of Recurrence-Free Survival in Patients After Surgical Resection of Gastrointestinal Stromal Tumors
Cited by: 15
Author(s): Xianglong Cao, Jian Cui, Tao Yu, Zijian Li, Gang Zhao
Software Mentions: 6
Published: almost 6 years ago

10.1177/01632787211003950

The Sexual Risk Behaviors Scale (SRBS): Development &amp; Validation in a University Student Sample in the UK
Cited by: 2
Author(s): Emanuele Fino, Rusi Jaspal, Betina Lopes, Liam Wignall, Claire A. J. Bloxsom
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-018-32336-y

A high content, small molecule screen identifies candidate molecular pathways that regulate rod photoreceptor outer segment renewal
Cited by: 9
Author(s): Leah J. Campbell, Megan C. West, Abbie M. Jensen
Software Mentions: 6
Published: almost 8 years ago

10.3389/fneur.2020.00729

Googling the Lifetime Risk of Stroke Around the World
Cited by: 3
Author(s): Thanh G. Phan, Anisha Haseeb, Richard Beare, Velandai Srikanth, Amanda G Thrift, Henry Ma
Software Mentions: 6
Published: almost 6 years ago

10.3389/fphys.2018.00388

Coupled Immunological and Biomechanical Model of Emphysema Progression
Cited by: 13
Author(s): Mario Ceresa, Andy L. Olivares, Jérôme Noailly, Miguel Ángel González Ballester
Software Mentions: 6
Published: about 8 years ago

10.1186/s12284-016-0098-1

Comparative Leaf and Root Transcriptomic Analysis of two Rice Japonica Cultivars Reveals Major Differences in the Root Early Response to Osmotic Stress
Cited by: 32
Author(s): Elena Baldoni, Paolo Bagnaresi, Franca Locatelli, Monica Mattana, Annamaria Genga
Software Mentions: 6
Published: about 10 years ago

10.3389/fmicb.2017.01563

Role of Age-Related Shifts in Rumen Bacteria and Methanogens in Methane Production in Cattle
Cited by: 28
Author(s): Chong Liu, Qinghui Meng, Yongxing Chen, Mengsi Xu, Min Shen, Rui Gao, Shangquan Gan
Software Mentions: 6
Published: almost 9 years ago

10.3389/fimmu.2017.00246

Host Genetic Background Strongly Affects Pulmonary microRNA Expression before and during Influenza A Virus Infection
Cited by: 19
Author(s): Matthias Preuße, Klaus Schughart, Frank Peßler
Software Mentions: 6
Published: over 9 years ago

10.7554/eLife.46464

Molecular and anatomical organization of the dorsal raphe nucleus
Cited by: 120
Author(s): Kee Wui Huang, Nicole Ochandarena, Adrienne C. Philson, Minsuk Hyun, Jaclyn E Birnbaum, Marcelo Cicconet, Bernardo L. Sabatini
Software Mentions: 6
Published: almost 7 years ago

10.3389/fonc.2021.587479

Identification of Mitochondrial-Related Prognostic Biomarkers Associated With Primary Bile Acid Biosynthesis and Tumor Microenvironment of Hepatocellular Carcinoma
Cited by: 21
Author(s): Tao Zhang, Yingli Nie, Jian Gu, Kailin Cai, Xiangdong Chen, Huili Li, Jiliang Wang
Software Mentions: 6
Published: over 5 years ago

10.1186/s12859-020-03818-6

Calculating the most likely intron splicing orders in S. pombe, fruit fly, Arabidopsis thaliana, and humans
Cited by: 2
Author(s): Meng Li
Software Mentions: 6
Published: over 5 years ago

10.3389/fmed.2021.587496

Potential Prognostic Immune Biomarkers of Overall Survival in Ovarian Cancer Through Comprehensive Bioinformatics Analysis: A Novel Artificial Intelligence Survival Prediction System
Cited by: 4
Author(s): Tingshan He, Liwen Huang, Jing Li, Peng Wang, Zhiqiao Zhang
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-020-73083-3

Evolutionary and ontogenetic changes of the anatomical organization and modularity in the skull of archosaurs
Cited by: 12
Author(s): Hiu Wai Lee, Borja Esteve‐Altava, Arhat Abzhanov
Software Mentions: 6
Published: almost 6 years ago

10.1002/evl3.148

Field cricket genome reveals the footprint of recent, abrupt adaptation in the wild
Cited by: 28
Author(s): Sónia Pascoal, Judith Risse, Xiao Zhang, Mark Blaxter, Timothée Cézard, Richard Challis, Karim Gharbi, John Hunt, Sujai Kumar, Emma Langan, Xuan Li, Jack G. Rayner, Michael G. Ritchie, L. Basten Snoek, Urmi Trivedi, Nathan W. Bailey
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-020-64929-x

Single-cell analysis of childhood leukemia reveals a link between developmental states and ribosomal protein expression as a source of intra-individual heterogeneity
Cited by: 29
Author(s): Maxime Caron, Pascal St-Onge, Thomas Sontag, Yu Chang Wang, Chantal Richer, Jiannis Ragoussis, Daniel Sinnett, Guillaume Bourque
Software Mentions: 6
Published: about 6 years ago

10.1186/s12870-017-1070-y

Plant-RRBS, a bisulfite and next-generation sequencing-based methylome profiling method enriching for coverage of cytosine positions
Cited by: 12
Author(s): Martin Schmidt, Michiel Van Bel, Magdalena Wołoszyńska, Bram Slabbinck, Cindy Martens, Marc De Block, Frederik Coppens, Mieke Van Lijsebettens
Software Mentions: 6
Published: almost 9 years ago

10.1038/s41598-020-61164-2

Hurricane-Induced Rainfall is a Stronger Predictor of Tropical Forest Damage in Puerto Rico Than Maximum Wind Speeds
Cited by: 43
Author(s): Jazlynn Hall, Robert Muscarella, Andrew W. Quebbeman, Gabriel Arellano, Jill Thompson, Jess K. Zimmerman, María Uríarte
Software Mentions: 6
Published: over 6 years ago

10.1093/gbe/evaa071

Distinct Life Histories Impact Dikaryotic Genome Evolution in the Rust Fungus Puccinia striiformis Causing Stripe Rust in Wheat
Cited by: 30
Author(s): Benjamin Schwessinger, Yan Jun Chen, Richard Tien, Josef Korbinian Vogt, Jana Sperschneider, Ramawatar Nagar, Mark McMullan, Thomas Sicheritz-Pontén, Chris K. Sørensen, Mogens S. Hovmøller, John P. Rathjen, Annemarie Fejer Justesen
Software Mentions: 6
Published: about 6 years ago

10.3390/microorganisms7120595

Dynamic Succession of Microbiota during Ensiling of Whole Plant Corn Following Inoculation with Lactobacillus buchneri and Lactobacillus hilgardii Alone or in Combination
Cited by: 40
Author(s): Pascal Drouin, Julien Tremblay, Frédérique Chaucheyras‐Durand
Software Mentions: 6
Published: over 6 years ago

10.3389/fped.2021.645060

Altered Gut Microbiota Taxonomic Compositions of Patients With Sepsis in a Pediatric Intensive Care Unit
Cited by: 12
Author(s): Jing Liu, Mingbang Wang, Wei-Ming Chen, Jing Ma, Yi Peng, Mingzhi Zhang, Chuanqing Wang, Gangfeng Yan, Guoping Li
Software Mentions: 6
Published: about 5 years ago

10.1155/2020/3259795

Prognostic Inflammasome-Related Signature Construction in Kidney Renal Clear Cell Carcinoma Based on a Pan-Cancer Landscape
Cited by: 3
Author(s): Tianyu Zheng, Xindong Wang, Peipei Yue, Tongtong Han, Yue Hu, Biyao Wang, Baohong Zhao, Xinwen Zhang, Yan Xu
Software Mentions: 6
Published: about 6 years ago

10.3389/fonc.2020.00809

Identification of Potential Key Genes for Pathogenesis and Prognosis in Prostate Cancer by Integrated Analysis of Gene Expression Profiles and the Cancer Genome Atlas
Cited by: 31
Author(s): Shuang Liu, Wenxin Wang, Yan Zhao, Kai-Ge Liang, Yaojiang Huang
Software Mentions: 6
Published: about 6 years ago

10.3389/fmicb.2021.617949

Compositional Data Analysis of Periodontal Disease Microbial Communities
Cited by: 9
Author(s): Laura Sisk-Hackworth, Adrian Ortiz-Velez, Micheal Reed, Scott T. Kelley
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pone.0106196

A Multi-Compartment Single and Multiple Dose Pharmacokinetic Comparison of Rectally Applied Tenofovir 1% Gel and Oral Tenofovir Disoproxil Fumarate
Cited by: 27
Author(s): Kuo Hsiung Yang, Craig W. Hendrix, Namandjé N. Bumpus, Julie Elliott, Karen Tanner, Christine Mauck, Ross D. Cranston, Ian McGowan, Nicola Richardson-Harman, Peter A. Anton, Angela D. M. Kashuba
Software Mentions: 6
Published: over 11 years ago

10.3389/fimmu.2021.707830

In-Depth Profiling of T-Cell Responsiveness to Commonly Recognized CMV Antigens in Older People Reveals Important Sex Differences
Cited by: 6
Author(s): Bernhard Reus, Stefano Caserta, Martin Larsen, George W. Morrow, Aalia Bano, Michael Hallensleben, Chakravarthi Rajkumar, Alejandra Pera, Florian Kern
Software Mentions: 6
Published: almost 5 years ago

10.3389/fgene.2021.709133

Identification of Transcription Factor-Related Gene Signature and Risk Score Model for Colon Adenocarcinoma
Cited by: 4
Author(s): Jia Wei Lin, Zichao Cao, Du Yu, Wei Cai
Software Mentions: 6
Published: almost 5 years ago

10.3389/fgene.2021.673530

Profiling of 3D Genome Organization in Nasopharyngeal Cancer Needle Biopsy Patient Samples by a Modified Hi-C Approach
Cited by: 3
Author(s): Sambhavi Animesh, Ruchi Choudhary, Bertrand Jern Han Wong, Charlotte Tze Jia Koh, Xin Yi Ng, J. S. H. Tay, Wan-Qin Chong, Jian Han, Leilei Chen, Boon Cher Goh, Melissa J. Fullwood
Software Mentions: 6
Published: almost 5 years ago

10.1186/1471-2105-15-324

Polyphony: superposition independent methods for ensemble-based drug discovery
Cited by: 8
Author(s): William R. Pitt, Rinaldo W. Montalvão, Tom L. Blundell
Software Mentions: 6
Published: almost 12 years ago

10.1186/1471-2148-14-117

Hermaphrodite life history and the maintenance of partial selfing in experimental populations of Caenorhabditis elegans
Cited by: 24
Author(s): Sara Carvalho, Patrick C. Phillips, Henrique Teotónio
Software Mentions: 6
Published: about 12 years ago

10.3390/ijerph17072593

Census Demographics and Chlorpyrifos Use in California’s Central Valley, 2011–15: A Distributional Environmental Justice Analysis
Cited by: 6
Author(s): Daniel J. Hicks
Software Mentions: 6
Published: about 6 years ago

10.1523/ENEURO.0085-20.2020

<i>neurotic</i>: Neuroscience Tool for Interactive Characterization
Cited by: 4
Author(s): Jeffrey P. Gill, Samuel Garcia, Lena H. Ting, Mengnan Wu, Hillel J. Chiel
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0152034

System-Wide Associations between DNA-Methylation, Gene Expression, and Humoral Immune Response to Influenza Vaccination
Cited by: 45
Author(s): Michael T. Zimmermann, Ann L. Oberg, Diane E. Grill, Inna G. Ovsyannikova, Iana H. Haralambieva, Richard B. Kennedy, Gregory A. Poland
Software Mentions: 6
Published: over 10 years ago

10.7554/eLife.10150

ETO family protein Mtgr1 mediates Prdm14 functions in stem cell maintenance and primordial germ cell formation
Cited by: 50
Author(s): Nataliya Nady, Ankit Gupta, Ziyang Ma, Tomek Swigut, Akiko Koide, Shohei Koide, Joanna Wysocka
Software Mentions: 6
Published: over 10 years ago

10.3389/fimmu.2018.00056

The Immune and Non-Immune Pathways That Drive Chronic Gastrointestinal Helminth Burdens in the Wild
Cited by: 20
Author(s): Simon A. Babayan, Wei Liu, Graham Hamilton, Elizabeth Kilbride, Evelyn C. Rynkiewicz, Melanie Clerc, Amy B. Pedersen
Software Mentions: 6
Published: over 8 years ago

10.3390/metabo11010012

Metabolic Dynamics of In Vitro CD8+ T Cell Activation
Cited by: 13
Author(s): Joy Edwards-Hicks, Michael Mitterer, Erika L. Pearce, Joerg M. Buescher
Software Mentions: 6
Published: over 5 years ago

10.1042/BSR20210760

Identification of m6A methyltransferase-related lncRNA signature for predicting immunotherapy and prognosis in patients with hepatocellular carcinoma
Cited by: 37
Author(s): Lili Li, Rongrong Xie, Guangrong Lu
Software Mentions: 6
Published: about 5 years ago

10.1155/2018/4059018

Big Data Management for Healthcare Systems: Architecture, Requirements, and Implementation
Cited by: 62
Author(s): Naoual El Aboudi, Laïla Benhlima
Software Mentions: 6
Published: about 8 years ago

10.3389/fninf.2020.00031

Pycabnn: Efficient and Extensible Software to Construct an Anatomical Basis for a Physiologically Realistic Neural Network Model
Cited by: 4
Author(s): Ines Wichert, Sanghun Jee, Erik De Schutter, Sungho Hong
Software Mentions: 6
Published: almost 6 years ago