10.1093/gbe/evaa053

Divergence-Based Introgression Polarization
Cited by: 8
Author(s): Evan S. Forsythe, Daniel B Sloan, Mark A. Beilstein
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0200959

Comparing species richness, functional diversity and functional composition of waterbird communities along environmental gradients in the neotropics
Cited by: 32
Author(s): Bia de Arruda Almeida, Andy J. Green, Esther Sebastián‐González, Luiz dos Anjos
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-021-82731-1

Mating system evolution and genetic structure of diploid sexual populations of Cyrtomium falcatum in Japan
Cited by: 0
Author(s): Ryōsuke Imai, Yoshiaki Tsuda, Atsushi Ebihara, Sadamu Matsumoto, Ayumi Tezuka, Atsushi J. Nagano, Ryo Ootsuki, Yasuyuki Watano
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-62139-z

Colorectal cancer-associated anaerobic bacteria proliferate in tumor spheroids and alter the microenvironment
Cited by: 35
Author(s): Stephen H. Kasper, Carolina Morell-Perez, Thomas P. Wyche, Theodore R. Sana, Linda A. Lieberman, Erik C. Hett
Software Mentions: 4
Published: over 6 years ago

10.3390/ma10121365

Optimization and Characterization of Paper-Made Surface Enhanced Raman Scattering (SERS) Substrates with Au and Ag NPs for Quantitative Analysis
Cited by: 27
Author(s): Silvia Dalla Marta, Chiara Novara, Fabrizio Giorgis, Alois Bonifacio, Valter Sergo
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-019-47046-2

SMAC, a computational system to link literature, biomedical and expression data
Cited by: 2
Author(s): S. Pirro, Emanuela Gadaleta, Andrea Galgani, Vittorio Colizzi, Claude Chelala
Software Mentions: 4
Published: about 7 years ago

10.1155/2019/5437531

Long Noncoding RNA ASB16-AS1 Promotes Proliferation, Migration, and Invasion in Glioma Cells
Cited by: 26
Author(s): Delong Zhang, Huanggui Zhou, Jun Liu, Jie Mao
Software Mentions: 4
Published: over 7 years ago

10.1098/rspb.2018.1473

Testing hypotheses for the function of the carnivoran baculum using finite-element analysis
Cited by: 11
Author(s): Charlotte A. Brassey, James Gardiner, Andrew C. Kitchener
Software Mentions: 4
Published: almost 8 years ago

10.1074/mcp.RA118.000877

Estimating the Contribution of Proteasomal Spliced Peptides to the HLA-I Ligandome*
Cited by: 86
Author(s): Roman Mylonas, Ilan Beer, Christian Iseli, Chloé Chong, Hui Song Pak, David Gfeller, George Coukos, Ioannis Xénarios, Markus Müller, Michal Bassani-Sternberg
Software Mentions: 4
Published: over 7 years ago

10.1098/rspb.2020.3150

Evolutionary versatility of the avian neck
Cited by: 9
Author(s): Ryan D. Marek, Peter L. Falkingham, Roger Benson, James Gardiner, Thomas W. Maddox, Karl T. Bates
Software Mentions: 4
Published: over 5 years ago

10.1186/1752-0509-5-127

Exploring pathway interactions in insulin resistant mouse liver
Cited by: 16
Author(s): Thomas Kelder, Lars Eijssen, Robert Kleemann, Marjan van Erk, Teake Kooistra, Chris T. Evelo
Software Mentions: 4
Published: over 15 years ago

10.1093/bioinformatics/bty476

Meffil: efficient normalization and analysis of very large DNA methylation datasets
Cited by: 173
Author(s): Josine L. Min, Gibran Hemani, George Davey Smith, Caroline L Relton, Matthew Suderman
Software Mentions: 4
Published: about 8 years ago

10.1098/rsos.200517

Brain microRNAs among social and solitary bees
Cited by: 12
Author(s): Karen M. Kapheim, Beryl M. Jones, Eirik Søvik, Eckart Stolle, Robert M. Waterhouse, Guy Bloch, Yehuda Ben‐Shahar
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-018-32252-1

Adjusting risk-taking to the annual cycle of long-distance migratory birds
Cited by: 21
Author(s): Peter Mikula, Mario Dı́az, Tomáš Albrecht, Jukka Jokimäki, Marja Liisa Kaisanlahti-Jokimäki, Gal Kroitero, Anders Pape Møller, Piotr Tryjanowski, Reuven Yosef, Martin Hromada
Software Mentions: 4
Published: almost 8 years ago

10.1038/srep18061

Probiotic treatment reduces appetite and glucose level in the zebrafish model
Cited by: 80
Author(s): Silvia Falcinelli, Ana Rodiles, Suraj Unniappan, Simona Picchietti, Giorgia Gioacchini, Daniel L. Merrifield, Oliana Carnevali
Software Mentions: 4
Published: over 10 years ago

10.3390/ijms21061910

NR2F2 Orphan Nuclear Receptor is Involved in Estrogen Receptor Alpha-Mediated Transcriptional Regulation in Luminal A Breast Cancer Cells
Cited by: 8
Author(s): Edina Erdős, Bálint László Bálint
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-017-01179-4

Monitoring global protein thiol-oxidation and protein S-mycothiolation in Mycobacterium smegmatis under hypochlorite stress
Cited by: 42
Author(s): Mélanie Hillion, Jörg Bernhardt, Tobias Busche, Martina Rossius, Sandra Maaß, Dörte Becher, Mamta Rawat, Markus Wirtz, Rüdiger Hell, Christian Rückert, Jörn Kalinowski, Haike Antelmann
Software Mentions: 4
Published: over 9 years ago

10.1002/pmic.201500264

Micro‐proteomics with iterative data analysis: Proteome analysis in <i>C. elegans</i> at the single worm level
Cited by: 28
Author(s): Dalila Bensaddek, Vikram Narayan, Armel Nicolas, Alejandro Brenes Murillo, Anton Gartner, Cynthia Kenyon
Software Mentions: 4
Published: over 10 years ago

10.1155/2020/5974350

A Prognostic Model Based on Six Metabolism-Related Genes in Colorectal Cancer
Cited by: 14
Author(s): Yuanlin Sun, Yang Zhang, Yuchen Guo, Zihao Yang, You Xu
Software Mentions: 4
Published: almost 6 years ago

10.1186/s40168-019-0671-0

Phyllosphere epiphytic and endophytic fungal community and network structures differ in a tropical mangrove ecosystem
Cited by: 118
Author(s): Hui Yao, Xiang Sun, Chunguang He, Pulak Maitra, Xingchun Li, Liang Guo
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-018-30318-8

Development and Validation of the Computerised Adaptive Beat Alignment Test (CA-BAT)
Cited by: 32
Author(s): Peter M. C. Harrison, Daniel Müllensiefen
Software Mentions: 4
Published: almost 8 years ago

10.3390/molecules26072027

Discovery of Post-Translational Modifications in Emiliania huxleyi
Cited by: 2
Author(s): Van-An Duong, Onyou Nam, EonSeon Jin, Jong Park, Hookeun Lee
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.4478

Noninvasive western lowland gorilla's health monitoring: A decade of simian immunodeficiency virus surveillance in southern Cameroon
Cited by: 1
Author(s): C. Julian Villabona-Arenas, Ahidjo Ayouba, Amandine Esteban, Mirela D’arc, Eitel Mpoudi Ngole, Martine Peeters
Software Mentions: 4
Published: almost 8 years ago

10.3390/insects10080252

Vertical and Horizontal Trophic Networks in the Aroid-Infesting Insect Community of Los Tuxtlas Biosphere Reserve, Mexico
Cited by: 2
Author(s): Guadalupe Amancio, Armando Aguirre‐Jaimes, Vicente Hernández-Ortíz, Roger Guevara, Maurício Quesada
Software Mentions: 4
Published: almost 7 years ago

10.1098/rspb.2014.2934

The forgotten flies: the importance of non-syrphid Diptera as pollinators
Cited by: 156
Author(s): Katherine A. Orford, Ian P. Vaughan, Jane Memmott
Software Mentions: 4
Published: over 11 years ago

10.3390/brainsci10060406

Evaluating the Impact of Age, Acoustic Exposure, and Electrical Stimulation on Binaural Sensitivity in Adult Bilateral Cochlear Implant Patients
Cited by: 12
Author(s): Tanvi Thakkar, Sean R. Anderson, Alan Kan, Ruth Y. Litovsky
Software Mentions: 4
Published: about 6 years ago

10.3389/frobt.2018.00067

Oncilla Robot: A Versatile Open-Source Quadruped Research Robot With Compliant Pantograph Legs
Cited by: 32
Author(s): Alexander Spröwitz, Alexandre Tuleu, Mostafa Ajallooeian, Massimo Vespignani, Rico Möckel, P. Eckert, Michiel D’Haene, Jonas Degrave, Arne Nordmann, Benjamin Schrauwen, Jochen J. Steil, Auke Jan Ijspeert
Software Mentions: 4
Published: about 8 years ago

10.3389/fonc.2020.00418

Comparison and Fusion of Deep Learning and Radiomics Features of Ground-Glass Nodules to Predict the Invasiveness Risk of Stage-I Lung Adenocarcinomas in CT Scan
Cited by: 36
Author(s): Xianwu Xia, Jing Gong, Hao Wen, Ting Yang, Yeqing Lin, Shengping Wang, Weijun Peng
Software Mentions: 4
Published: over 6 years ago

10.1128/mSphere.00550-17

Convergent Evolution Driven by Rifampin Exacerbates the Global Burden of Drug-Resistant Staphylococcus aureus
Cited by: 47
Author(s): Romain Guérillot, Anders Gonçalves da Silva, Ian R. Monk, Stefano Giulieri, Takehiro Tomita, Eloise Alison, Jessica L. Porter, Sacha J. Pidot, Wei Gao, Anton Y. Peleg, Torsten Seemann, Timothy P. Stinear, Benjamin P Howden
Software Mentions: 4
Published: over 8 years ago

10.3390/metabo11010029

Gut Microbiota Dysbiosis Is Associated with Elevated Bile Acids in Parkinson’s Disease
Cited by: 68
Author(s): Peipei Li, Bryan A. Killinger, Elizabeth Ensink, Ian Beddows, Ali Yılmaz, Noah Lubben, Jared Lamp, Meghan Schilthuis, Irving E. Vega, Randy Woltjer, J. Andrew Pospisilik, Patrik Brundin, Lena Brundin, Stewart F. Graham, Viviane Labrie
Software Mentions: 4
Published: over 5 years ago

10.1007/s11306-020-01750-7

SUMMER, a shiny utility for metabolomics and multiomics exploratory research
Cited by: 3
Author(s): Ling Huang, António Currais, Maxim N. Shokhirev
Software Mentions: 4
Published: over 5 years ago

10.1186/s13059-016-1146-2

Chrom3D: three-dimensional genome modeling from Hi-C and nuclear lamin-genome contacts
Cited by: 148
Author(s): Jonas Paulsen, Monika Sekelja, Anja R. Oldenburg, Alice Barateau, Nolwenn Briand, Erwan Delbarre, Akshay Shah, Anita L. Sørensen, Corinne Vigouroux, Brigitte Buendia, Philippe Collas
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-021-81788-2

Relevance of ddRADseq method for species and population delimitation of closely related and widely distributed wolf spiders (Araneae, Lycosidae)
Cited by: 5
Author(s): Vladislav Ivanov, Yuri M. Marusik, Julien Pétillon, Marko Mutanen
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2018.02926

Effects of Organic Pollutants on Bacterial Communities Under Future Climate Change Scenarios
Cited by: 25
Author(s): Juanjo Rodríguez, Christine Gallampois, Sari Timonen, Agneta Andersson, Hanna Sinkko, Peter Haglund, Åsa M. M. Berglund, Mátyás Ripszám, Daniela Figueroa, Mats Tysklind, Owen Rowe
Software Mentions: 4
Published: over 7 years ago

10.3390/s18114029

Sensor Fusion for Recognition of Activities of Daily Living
Cited by: 51
Author(s): Jiaxuan Wu, Yunfei Feng, Peng Sun
Software Mentions: 4
Published: over 7 years ago

10.1186/s40168-018-0408-5

Integrated multi-omic analysis of host-microbiota interactions in acute oak decline
Cited by: 44
Author(s): Martin Broberg, James Doonan, Filip Mundt, Sandra Denman, James E. McDonald
Software Mentions: 4
Published: over 8 years ago

10.1155/2021/9967954

Construction and Validation of a Macrophage-Associated Risk Model for Predicting the Prognosis of Osteosarcoma
Cited by: 5
Author(s): Kang-Wen Xiao, Zhibo Liu, Zhao-Yi Zeng, F. Yan, Lingfei Xiao, Jiali Li, Lin Cai
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-020-78090-y

Linear infrastructure habitats increase landscape-scale diversity of plants but not of flower-visiting insects
Cited by: 9
Author(s): Juliana Dániel‐Ferreira, Riccardo Bommarco, Jörgen Wissman, Erik Öckinger
Software Mentions: 4
Published: over 5 years ago

10.1186/s13048-021-00830-z

CACNA1C is a prognostic predictor for patients with ovarian cancer
Cited by: 14
Author(s): Xiaohan Chang, Yuanhua Dong
Software Mentions: 4
Published: about 5 years ago

10.1186/1471-2164-15-989

Evaluation of viral genome assembly and diversity estimation in deep metagenomes
Cited by: 31
Author(s): Daniel Aguirre de Cárcer, Florent E. Angly, Antonio Alcamı́
Software Mentions: 4
Published: over 12 years ago

10.1186/s12862-017-0885-3

Grandparental immune priming in the pipefish Syngnathus typhle
Cited by: 39
Author(s): Anne Beemelmanns, Olivia Roth
Software Mentions: 4
Published: over 9 years ago

10.3389/fmicb.2020.01077

The Gene Flow Direction of Geographically Distinct Phytophthora infestans Populations in China Corresponds With the Route of Seed Potato Exchange
Cited by: 6
Author(s): Fangluan Gao, Changsheng Chen, Benjin Li, Qiyong Weng, Qinghe Chen
Software Mentions: 4
Published: about 6 years ago

10.3389/fmicb.2019.01448

Decoupling the Dynamics of Bacterial Taxonomy and Antibiotic Resistance Function in a Subtropical Urban Reservoir as Revealed by High-Frequency Sampling
Cited by: 24
Author(s): Peiju Fang, Peng Feng, Xiaofei Gao, Peng Xiao, Jun Yang
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0136018

Markedly Divergent Tree Assemblage Responses to Tropical Forest Loss and Fragmentation across a Strong Seasonality Gradient
Cited by: 14
Author(s): Rodrigo Leonel Lozano Orihuela, Carlos A. Peres, Gabriel Mendes, João André Jarenkow, Marcelo Tabarelli
Software Mentions: 4
Published: almost 11 years ago

10.1002/ece3.7178

Pliant pathogens: Estimating viral spread when confronted with new vector, host, and environmental conditions
Cited by: 3
Author(s): Anita J. Porath-Krause, Ryan M. Campbell, Lauren G. Shoemaker, Andrew Sieben, Alexander T. Strauss, Allison K. Shaw, Eric W. Seabloom, Elizabeth T. Borer
Software Mentions: 4
Published: over 5 years ago

10.1128/AEM.00305-19

Bacterial and Fungal Endophytic Microbiomes of <i>Salicornia europaea</i>
Cited by: 46
Author(s): Bliss Ursula Furtado, Marcin Gołębiewski, Monika Skorupa, Piotr Hulisz, Katarzyna Hrynkiewicz
Software Mentions: 4
Published: about 7 years ago

10.3389/fvets.2018.00174

Lack of Transmission of Foot-and-Mouth Disease Virus From Persistently Infected Cattle to Naïve Cattle Under Field Conditions in Vietnam
Cited by: 35
Author(s): Miranda R. Bertram, Le T. Vu, Steven J. Pauszek, Bárbara Brito, E. E. Hartwig, George R. Smoliga, Bui H. Hoang, Nguyễn Thị Kim Phượng, Carolina Stenfeldt, Ian Fish, Vo Van Hung, Amy H. Delgado, Kimberly VanderWaal, Luis L. Rodrı́guez, Nguyễn Thành Long, Do H. Dung, Jonathan Arzt
Software Mentions: 4
Published: about 8 years ago

10.3389/fpls.2021.658406

Changes in Reproductive Traits in Physalis philadelphica; An Unexpected Shift Toward Self-Incompatibility in a Domesticated Annual Fruit Crop
Cited by: 3
Author(s): Lislie Solís-Montero, Lorena Aceves-Chong, Mayumi Vega-Polanco, Ofelia Vargas‐Ponce
Software Mentions: 4
Published: about 5 years ago

10.1002/ece3.3311

Evolutionary divergence in life history traits among populations of the Lake Malawi cichlid fish <i>Astatotilapia calliptera</i>
Cited by: 6
Author(s): Paul J. Parsons, Jon R. Bridle, Lukas Rüber, Martin J. Genner
Software Mentions: 4
Published: almost 9 years ago

10.18632/oncotarget.25965

Snail mediates repression of the Dlk1-Dio3 locus in lung tumor-infiltrating immune cells
Cited by: 4
Author(s): Svenja Groeneveld, Julien Faget, Nadine Zangger, Etienne Meylan
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0214047

The impact of caring for children on women’s research output: A retrospective cohort study
Cited by: 6
Author(s): Lauren Sewell, Adrian Barnett
Software Mentions: 4
Published: over 7 years ago

10.12688/f1000research.4856.2

Thrombocytosis portends adverse prognostic significance in patients with stage II colorectal carcinoma
Cited by: 12
Author(s): Tianhua Guo, Marcin Krzystanek, Zoltán Szállási, A Szállaśi
Software Mentions: 4
Published: almost 12 years ago

10.3389/fneur.2020.00316

Observational Study of Pulse Transit Time in Children With Sleep Disordered Breathing
Cited by: 1
Author(s): Michael Yanney, Andrew Prayle, Nicola J. Rowbotham, Miguel Kurc, Sean Tilbrook, Nabeel Ali
Software Mentions: 4
Published: over 6 years ago

10.1002/1878-0261.12503

HDAC7‐mediated control of tumour microenvironment maintains proliferative and stemness competence of human mammary epithelial cells
Cited by: 27
Author(s): Valentina Cutano, Eros Di Giorgio, Martina Minisini, Raffaella Picco, Emiliano Dalla, Claudio Brancolini
Software Mentions: 4
Published: about 7 years ago

10.1093/gigascience/giaa111

IDseq—An open source cloud-based pipeline and analysis service for metagenomic pathogen detection and monitoring
Cited by: 134
Author(s): Katrina Kalantar, Tiago Rodrigues De Carvalho, Charles F. A. de Bourcy, Boris Dimitrov, Greg Dingle, Rebecca Egger, Julie Han, Olivia B. Holmes, Yun Fang Juan, Ryan J. King, Andrey Kislyuk, Michael Lin, Maria Mariano, Todd Morse, Lucia V. Reynoso, David Rissato Cruz, Jonathan Sheu, Jennifer Tang, James Wang, Mark A. Zhang, Emily Zhong, Vida Ahyong, Sreyngim Lay, Sophana Chea, Jennifer A. Bohl, Jessica E. Manning, Cristina M. Tato, Joseph L. DeRisi
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0227130

Community- and trophic-level responses of soil nematodes to removal of a non-native tree at different stages of invasion
Cited by: 2
Author(s): Guadalupe Peralta, Ian A. Dickie, G. W. Yeates, Duane A. Peltzer
Software Mentions: 4
Published: over 6 years ago

10.3389/fmicb.2020.01686

Soil Fungal Communities Investigated by Metabarcoding Within Simulated Forensic Burial Contexts
Cited by: 11
Author(s): Noemi Procopio, Stefano Ghignone, Samuele Voyron, Marco Chiapello, Anna Williams, Andrew Chamberlain, Antonietta Mello, Michael Buckley
Software Mentions: 4
Published: about 6 years ago

10.1186/s13024-018-0254-8

Identification and therapeutic modulation of a pro-inflammatory subset of disease-associated-microglia in Alzheimer’s disease
Cited by: 227
Author(s): Srikant Rangaraju, Eric B. Dammer, Syed Ali Raza, Priyadharshini Rathakrishnan, Hailian Xiao, Tianwen Gao, Duc M. Duong, Michael W. Pennington, James J. Lah, Nicholas T. Seyfried, Aĺlan I. Levey
Software Mentions: 4
Published: about 8 years ago

10.3390/insects9040152

Distribution Patterns of Odonate Assemblages in Relation to Environmental Variables in Streams of South Korea
Cited by: 13
Author(s): Da-Yeong Lee, Dae‐Seong Lee, Mi‐Jung Bae, Soon-Jin Hwang, Seong-Yu Noh, Jeong-Suk Moon, Young‐Seuk Park
Software Mentions: 4
Published: almost 8 years ago

10.1186/s13059-015-0590-8

Field pathogenomics reveals the emergence of a diverse wheat yellow rust population
Cited by: 175
Author(s): Amelia Hubbard, Clare M. Lewis, Kentaro Yoshida, Ricardo H. Ramírez-González, C. de Vallavieille‐Pope, Jane Thomas, Sophien Kamoun, R. A. Bayles, Cristóbal Uauy, Diane G. O. Saunders
Software Mentions: 4
Published: over 11 years ago

10.7717/peerj.9821

Assessing the responses of <i>Sphagnum</i> micro-eukaryotes to climate changes using high throughput sequencing
Cited by: 10
Author(s): Monika Reczuga, Christophe V. W. Seppey, Matthieu Mulot, Vincent E. J. Jassey, Alexandre Buttler, Sandra Słowińska, Michael Słowiński, Enrique Lara, Mariusz Lamentowicz, Edward A. D. Mitchell
Software Mentions: 4
Published: almost 6 years ago

10.1186/1475-2859-6-29

Thioredoxin reductase is a key factor in the oxidative stress response of Lactobacillus plantarum WCFS1
Cited by: 107
Author(s): L.M. Serrano, Douwe Molenaar, Michiel Wels, Bas Teusink, Peter A. Bron, Willem M. de Vos, Eddy J. Smid
Software Mentions: 4
Published: almost 19 years ago

10.1186/s13073-018-0563-0

Exploration of Plasmodium vivax transmission dynamics and recurrent infections in the Peruvian Amazon using whole genome sequencing
Cited by: 25
Author(s): Annie N. Cowell, Hugo O. Valdivia, Danett K. Bishop, Elizabeth A. Winzeler
Software Mentions: 4
Published: about 8 years ago

10.1093/biostatistics/kxy084

MACPET: model-based analysis for ChIA-PET
Cited by: 0
Author(s): Ioannis Vardaxis, Finn Drabløs, Morten Rye, Bo Henry Lindqvist
Software Mentions: 4
Published: over 7 years ago

10.1002/eap.2089

Local‐ and landscape‐scale variables shape insect diversity in an urban biodiversity hot spot
Cited by: 36
Author(s): Benjamin J. Adams, Enjie Li, Christine A. Bahlai, Emily K. Meineke, Terrence P. McGlynn, Brian V. Brown
Software Mentions: 4
Published: over 6 years ago

10.3389/fimmu.2020.01390

Alterations in Circulating Fatty Acid Are Associated With Gut Microbiota Dysbiosis and Inflammation in Multiple Sclerosis
Cited by: 94
Author(s): Marina Saresella, Ivana Marventano, Monica Barone, Francesca La Rosa, Federica Piancone, Laura Mendozzi, Alessia d’Arma, Valentina Rossi, Luigi Pugnetti, Gabriella Roda, Eleonora Casagni, Michele Dei, Rita Paroni, Patrizia Brigidi, Silvia Turroni, Mario Clerici
Software Mentions: 4
Published: about 6 years ago

10.1002/ece3.6973

Morphometric and genetic evidence for four species of gentoo penguin
Cited by: 10
Author(s): Joshua Tyler, Matthew T. Bonfitto, Gemma V. Clucas, Srinivas K. Reddy, Jane L. Younger
Software Mentions: 4
Published: almost 6 years ago

10.1002/ece3.2260

Into the deep: the functionality of mesopelagic excursions by an oceanic apex predator
Cited by: 31
Author(s): Lucy A. Howey, Emily R. Tolentino, Yannis P. Papastamatiou, Edward J. Brooks, Debra L. Abercrombie, Yuki Watanabe, Sean Williams, Annabelle Brooks, Demian D. Chapman, Lance K. B. Jordan
Software Mentions: 4
Published: about 10 years ago

10.1038/s41598-021-83417-4

Soil mite communities (Acari: Mesostigmata) as indicators of urban ecosystems in Bucharest, Romania
Cited by: 9
Author(s): Minodora Manu, Raluca Ioana Băncilă, Constantin-Ciprian Bîrsan, Owen Mountford, Marilena Onete
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-78851-9

Genome-wide correlation analysis to identify amplitude regulators of circadian transcriptome output
Cited by: 7
Author(s): Evan S. Littleton, Madison L. Childress, Michaela L. Gosting, Ayana N. Jackson, Shihoko Kojima
Software Mentions: 4
Published: over 5 years ago

10.1200/CCI.19.00001

Discovery of Noncancer Drug Effects on Survival in Electronic Health Records of Patients With Cancer: A New Paradigm for Drug Repurposing
Cited by: 21
Author(s): Yonghui Wu, Jeremy L. Warner, Liwei Wang, Min Jiang, Jun Xu, Qingxia Chen, Hui Nian, Qi Dai, Xianglin L. Du, Ping Yang, Joshua C. Denny, Hongfang Liu, Hua Xu
Software Mentions: 4
Published: over 6 years ago

10.1186/s40249-020-00647-w

Spatio-temporal co-occurrence of hotspots of tuberculosis, poverty and air pollution in Lima, Peru
Cited by: 23
Author(s): Gabriel Carrasco-Escobar, Alvaro Schwalb, Kelly Tello-Lizarraga, Percy Vega-Guerovich, César Ugarte-Gil
Software Mentions: 4
Published: over 6 years ago

10.1107/S090744491201863X

The use of workflows in the design and implementation of complex experiments in macromolecular crystallography
Cited by: 36
Author(s): Sándor Brockhauser, Olof Svensson, Matthew W. Bowler, Max H. Nanao, E. Gordón, Ricardo M. F. Leal, А. Н. Попов, Matthew Gerring, A.A. McCarthy, Andrew Götz
Software Mentions: 4
Published: about 14 years ago

10.1038/srep35272

Integrated analysis of bacterial and microeukaryotic communities from differentially active mud volcanoes in the Gulf of Cadiz
Cited by: 21
Author(s): Francisco J. R. C. Coelho, António Louvado, Patrícia M. Domingues, Daniel F. R. Cleary, Marina Ferreira, Adelaide Almeida, Ascensão Ravara, Ângela Cunha, Newton C. M. Gomes
Software Mentions: 4
Published: almost 10 years ago

10.1002/hbm.24213

Accurate nonlinear mapping between MNI volumetric and FreeSurfer surface coordinate systems
Cited by: 66
Author(s): Jer-Fang Wu, Gia H. Ngo, Douglas N. Greve, J. Li, Tong He, Bruce Fischl, Simon B. Eickhoff, B.T. Thomas Yeo
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-017-13892-1

Development and validation of a risk prediction model for work disability: multicohort study
Cited by: 24
Author(s): Juhani Airaksinen, Markus Jokela, Marianna Virtanen, Tuula Oksanen, Jaana Pentti, Jussi Vahtera, Markku Koskenvuo, Ichiro Kawachi, G. David Batty, Mika Kivimäki
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pone.0178603

Proteome-wide profiling of protein lysine acetylation in Aspergillus flavus
Cited by: 17
Author(s): Yangyong Lv
Software Mentions: 4
Published: about 9 years ago

10.1038/s41598-018-32966-2

Variable importance for sustaining macrophyte presence via random forests: data imputation and model settings
Cited by: 8
Author(s): Wout Van Echelpoel, Peter Goethals
Software Mentions: 4
Published: almost 8 years ago

10.1371/journal.pone.0258207

A new phenothiazine derivate is active against Clostridioides difficile and shows low cytotoxicity
Cited by: 3
Author(s): Troels Ronco, Francisca Maria Aragao, Lasse Saaby, Jørn B. Christensen, A. Permin, Andrew R. Williams, Stig Milan Thamsborg, Rikke Heidemann Olsen
Software Mentions: 4
Published: almost 5 years ago

10.1186/s12859-018-2029-1

Deep learning of mutation-gene-drug relations from the literature
Cited by: 36
Author(s): Kyubum Lee, Byounggun Kim, Yong-Hwa Choi, Sunkyu Kim, Weon Ho Shin, Sunwon Lee, Sungjoon Park, Seongsoon Kim, Aik Choon Tan, Jaewoo Kang
Software Mentions: 4
Published: over 8 years ago

10.1002/ece3.4304

Genomic divergence between Spanish<i>Littorina saxatilis</i>ecotypes unravels limited admixture and extensive parallelism associated with population history
Cited by: 25
Author(s): Tony Kess, Juan Galindo, Elizabeth G. Boulding
Software Mentions: 4
Published: about 8 years ago

10.1186/s12862-015-0298-0

A Boolean gene regulatory model of heterosis and speciation
Cited by: 8
Author(s): Peter M. F. Emmrich, Hannah Roberts, Véra Pancaldi
Software Mentions: 4
Published: over 11 years ago

10.1038/s41598-018-22580-7

Brettanomyces bruxellensis population survey reveals a diploid-triploid complex structured according to substrate of isolation and geographical distribution
Cited by: 70
Author(s): Marta Avramova, Alice Cibrario, Emilien Peltier, Monika Coton, Emmanuel Coton, Joseph Schacherer, Giuseppe Spano, Vittorio Capozzi, Giuseppe Blaiotta, Franck Salin, Marguerite Dols‐Lafargue, Paul R. Grbin, Chris Curtin, Warren Albertin, Isabelle Masneuf‐Pomarède
Software Mentions: 4
Published: over 8 years ago

10.3389/fimmu.2021.644838

High Resolution Haplotype Analyses of Classical HLA Genes in Families With Multiple Sclerosis Highlights the Role of HLA-DP Alleles in Disease Susceptibility
Cited by: 4
Author(s): Kazutoyo Osoegawa, Lisa E. Creary, Gonzalo Montero-Martín, Kalyan C. Mallempati, Sridevi Gangavarapu, Stacy J. Caillier, Adam Santaniello, Noriko Isobe, Jill A. Hollenbach, Stephen L. Hauser, Jorge R. Oksenberg, Marcelo Fernández-Viña
Software Mentions: 4
Published: about 5 years ago

10.1083/jcb.202004010

mTORC1 activity is supported by spatial association with focal adhesions
Cited by: 35
Author(s): Yoana Rabanal‐Ruiz, Adam Byron, Alexander Wirth, Ralitsa R. Madsen, Lucia Sedlackova, Graeme Hewitt, Glyn Nelson, Julian Stingele, Jimi Wills, Tong Zhang, André Zeug, Reinhard Fässler, Bart Vanhaesebroeck, Oliver D.K. Maddocks, Evgeni Ponimaskin, Bernadette Carroll, Viktor I. Korolchuk
Software Mentions: 4
Published: over 5 years ago

10.1186/s12989-018-0244-6

Differences in MWCNT- and SWCNT-induced DNA methylation alterations in association with the nuclear deposition
Cited by: 53
Author(s): Deniz Öner, Manosij Ghosh, Hannelore Bové, Matthieu Moisse, Bram Boeckx, Radu Corneliu Duca, Katrien Poels, Katrien Luyts, Eveline Putzeys, Kirsten Van Landuydt, Jeroen Vanoirbeek, Marcel Ameloot, Diether Lambrechts, Lode Godderis, Peter Hoet
Software Mentions: 4
Published: over 8 years ago

10.1186/1471-2105-7-264

Spatial normalization of array-CGH data
Cited by: 76
Author(s): Pierre Neuvial, Philippe Hupé, Isabel Martínez Brito, Stéphane Liva, Élodie Manié, Caroline Brennetot, François Radvanyi, Alain Aurias, Emmanuel Barillot
Software Mentions: 4
Published: about 20 years ago

10.1186/s13567-014-0114-7

Multilocus sequence analysis of Anaplasma phagocytophilum reveals three distinct lineages with different host ranges in clinically ill French cattle
Cited by: 25
Author(s): Amélie Chastagner, Thibaud Dugat, Gwenaël Vourc’H, Hélène Verheyden, Loïc Legrand, Véronique Bachy, Luc Chabanne, Guy Joncour, Renaud Maillard, Henri-Jean Boulouis, Nadia Haddad, Xavier Bailly, Agnès Leblond
Software Mentions: 4
Published: over 11 years ago

10.1186/s40168-017-0301-7

Environmental drivers of viral community composition in Antarctic soils identified by viromics
Cited by: 87
Author(s): Evelien M. Adriaenssens, Rolf Kramer, Marc W. Van Goethem, Thulani P. Makhalanyane, Ian D. Hogg, Don A. Cowan
Software Mentions: 4
Published: about 9 years ago

10.1002/pld3.53

Farm<scp>CPU</scp>pp: Efficient large‐scale genomewide association studies
Cited by: 22
Author(s): Aaron Kusmec, Patrick S. Schnable
Software Mentions: 4
Published: over 8 years ago

10.1007/s00401-021-02322-2

Altered oligodendroglia and astroglia in chronic traumatic encephalopathy
Cited by: 25
Author(s): Kevin Blake Chancellor, Sarah E. Chancellor, Joseph E. Duke-Cohan, Bertrand R. Huber, Thor D. Stein, Victor E. Alvarez, Benjamin W. Okaty, Susan M. Dymecki, Ann C. McKee
Software Mentions: 4
Published: about 5 years ago

10.1186/s12859-019-3243-1

M3S: a comprehensive model selection for multi-modal single-cell RNA sequencing data
Cited by: 8
Author(s): Yu Zhang, Chunli Wan, Pengcheng Wang, Wennan Chang, Yan Huo, Jian Chen, Qin Ma, Sha Cao, Chi Zhang
Software Mentions: 4
Published: over 6 years ago

10.3389/fpls.2020.589005

Elucidation of the miR164c-Guided Gene/Protein Interaction Network Controlling Seed Vigor in Rice
Cited by: 5
Author(s): Kerui Huang, Shiqi Zhou, Kaimin Shen, Yan Zhou, Feng Wang, Xiaocheng Jiang
Software Mentions: 4
Published: over 5 years ago

10.1186/1471-2105-13-317

A Monte Carlo-based framework enhances the discovery and interpretation of regulatory sequence motifs
Cited by: 18
Author(s): Phillip Seitzer, Elizabeth G. Wilbanks, David Larsen, Marc T. Facciotti
Software Mentions: 4
Published: over 13 years ago

10.1371/journal.pgen.1009390

Zebrafish Ski7 tunes RNA levels during the oocyte-to-embryo transition
Cited by: 11
Author(s): Luis Enrique Cabrera-Quio, Alexander Schleiffer, Karl Mechtler, Andrea Pauli
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-017-16352-y

First-trimester vaginal microbiome diversity: A potential indicator of preterm delivery risk
Cited by: 48
Author(s): Mohammed Monzoorul Haque, Mitali Merchant, Pinna Nishal Kumar, Anirban Dutta, Sharmila S. Mande
Software Mentions: 4
Published: over 8 years ago

10.3389/fneur.2018.00015

Assessment of Platelet Function in Traumatic Brain Injury—A Retrospective Observational Study in the Neuro-Critical Care Setting
Cited by: 24
Author(s): Caroline Lindblad, Eric Peter Thelin, Michael Nekludov, Arvid Frostell, David W. Nelson, Mikael Svensson, Bo‐Michael Bellander
Software Mentions: 4
Published: over 8 years ago

10.3390/s21041456

Web AR Solution for UAV Pilot Training and Usability Testing
Cited by: 10
Author(s): Roberto Ribeiro, João Ramos, David Safadinho, Arsénio Reis, Carlos Rabadão, João Barroso, António Pereira
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-73272-0

Climatic oscillations in Quaternary have shaped the co-evolutionary patterns between the Norway spruce and its host-associated herbivore
Cited by: 13
Author(s): Jakub Goczał, Andrzej Oleksa, Robert Rossa, Igor J. Chybicki, Katarzyna Meyza, Radosław Plewa, Matti Landvik, Mauro Gobbi, Gernot Hoch, Vytautas Tamutis, Maksims Balalaikins, Dmitry Telnov, Maria-Magdalena Dascălu, Adam Tofilski
Software Mentions: 4
Published: almost 6 years ago

10.3389/fphys.2018.01161

Estimating Attractor Reachability in Asynchronous Logical Models
Cited by: 20
Author(s): Nuno D. Mendes, Rui Henriques, Élisabeth Rémy, Jorge Carneiro, Pedro T. Monteiro, Claudine Chaouiya
Software Mentions: 4
Published: almost 8 years ago