Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1111/cmi.12397

https://doi.org/10.1111/cmi.12397

The co‐transcriptome of uropathogenic<scp><i>E</i></scp><i>scherichia coli</i>‐infected mouse macrophages reveals new insights into host–pathogen interactions

Cited by: 62
Author(s): Charalampos Harris Mavromatis, Nilesh J. Bokil, Makrina Totsika, Asha Kakkanat, Kolja Schaale, Carlo Vittorio Cannistraci, Tae Woo Ryu, Scott A. Beatson, Glen C. Ulett, Mark A. Schembri, Matthew J. Sweet, Timothy Ravasi
Published: almost 10 years ago

Software Mentions 4

bioconductor: cummeRbund
Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.
Papers that mentioned: 83
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
pypi: java
Papers that mentioned: 165
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017