Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1128/JVI.01399-20

https://doi.org/10.1128/JVI.01399-20

Dissecting Herpes Simplex Virus 1-Induced Host Shutoff at the RNA Level

Cited by: 22
Author(s): Caroline C. Friedel, Adam W. Whisnant, Lara Djaković, Andrzej Rutkowski, Marie-Sophie Friedl, Michael Kluge, James C Williamson, Somesh Sai, Ramón Vidal, Sascha Sauer, Thomas Hennig, Arnhild Grothey, Andrea Milić, Bhupesh K. Prusty, Paul J. Lehner, Nicholas J Matheson, Florian Erhard, Lars Dölken
Published: over 3 years ago

Software Mentions 4

bioconductor: ChIPseeker
ChIPseeker for ChIP peak Annotation, Comparison, and Visualization
Papers that mentioned: 161
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: Gviz
Plotting data and annotation information along genomic coordinates
Papers that mentioned: 134
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203