Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0158936

https://doi.org/10.1371/journal.pone.0158936

LHP1 Regulates H3K27me3 Spreading and Shapes the Three-Dimensional Conformation of the Arabidopsis Genome

Cited by: 91
Author(s): Alaguraj Veluchamy, Teddy Jégu, Federico Ariel, David Latrasse, Kadarkaraisamy Mariappan, Soon-Kap Kim, Martín Crespi, Heribert Hirt, Catherine Bergounioux, Cécile Raynaud, Moussa Benhamed
Published: about 8 years ago

Software Mentions 4

bioconductor: cummeRbund
Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.
Papers that mentioned: 83
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017