10.3389/fmicb.2019.00479

Shotgun Metagenomics of a Water Kefir Fermentation Ecosystem Reveals a Novel Oenococcus Species
Cited by: 72
Author(s): Marko Verce, Luc De Vuyst, Stefan Weckx
Software Mentions: 4
Published: over 7 years ago

10.1186/s40425-019-0556-6

Collagen density regulates the activity of tumor-infiltrating T cells
Cited by: 199
Author(s): Dorota Ewa Kuczek, Axel Larsen, Marie-Louise Thorseth, Marco Carretta, Adrija Kalviša, Majken Siersbæk, Ana Micaela Carnaz Simões, Anne Roslind, Lars H. Engelholm, Elfriede Noeßner, Marco Donia, Inge Marie Svane, Per thor Straten, Lars Grøntved, Daniel H. Madsen
Software Mentions: 4
Published: over 7 years ago

10.18632/aging.103945

Single-cell transcriptome analysis demonstrates inter-patient and intra-tumor heterogeneity in primary and metastatic lung adenocarcinoma
Cited by: 20
Author(s): Yafei Liu, Guanchao Ye, Lan Huang, Chunyang Zhang, Yinliang Sheng, Bin Wu, Lu Han, Chunli Wu, Bo Dong, Yu Qi
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj.3334

<i>pathVar:</i>a new method for pathway-based interpretation of gene expression variability
Cited by: 6
Author(s): Laurence de Torrenté, Stephanie M. Zimmerman, Deanne Taylor, Yu Hasegawa, Christine A. Wells, Jessica C. Mar
Software Mentions: 4
Published: about 9 years ago

10.3389/fimmu.2017.01351

Critical Role of Plasmacytoid Dendritic Cells in Regulating Gene Expression and Innate Immune Responses to Human Rhinovirus-16
Cited by: 11
Author(s): Xi Yang, Niamh M. Troy, Denise Anderson, Olga M. Pena, Jason P. Lynch, Simon Phipps, Anthony Bosco, John W. Upham
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pone.0179901

Microarray analyses of otospheres derived from the cochlea in the inner ear identify putative transcription factors that regulate the characteristics of otospheres
Cited by: 2
Author(s): Takehiro Iki, Michihiro Tanaka, Shin‐ichiro Kitajiri, Tomoko Kita, Yoshihisa Kawasaki, Akifumi Mizukoshi, Wataru Fujibuchi, Takayuki Nakagawa, Tatsutoshi Nakahata, Juichi Ito, Koichi Omori, Megumu K. Saito
Software Mentions: 4
Published: about 9 years ago

10.1371/journal.pone.0134168

Comparative Proteomics of Activated THP-1 Cells Infected with Mycobacterium tuberculosis Identifies Putative Clearance Biomarkers for Tuberculosis Treatment
Cited by: 19
Author(s): Benjawan Kaewseekhao, Vivek Naranbhai, Sittiruk Roytrakul, Wises Namwat, Atchara Paemanee, Viraphong Lulitanond, Angkana Chaiprasert, Kiatichai Faksri
Software Mentions: 4
Published: about 11 years ago

10.3389/fneur.2020.582767

Added Prognostic Value of Hemorrhagic Transformation Quantification in Patients With Acute Ischemic Stroke
Cited by: 8
Author(s): Katinka R. van Kranendonk, Kilian M. Treurniet, Anna M. M. Boers, Olvert A. Berkhemer, Jonathan M. Coutinho, Hester F. Lingsma, Wim H. van Zwam, Aad van der Lugt, Robert J. van Oostenbrugge, Diederik W.J. Dippel, Yvo B.W.E.M. Roos, Henk A. Marquering, Charles B. L. M. Majoie, Clean Registry Investigators
Software Mentions: 4
Published: over 5 years ago

10.1186/s12936-018-2500-5

malariaAtlas: an R interface to global malariometric data hosted by the Malaria Atlas Project
Cited by: 61
Author(s): Daniel Pfeffer, Timothy C. D. Lucas, D. May, Jonathan Harris, Jennifer Rozier, Katherine A. Twohig, Ursula Dalrymple, Carlos A. Guerra, Catherine L. Moyes, Mike Thorn, Michele Nguyen, Samir Bhatt, Ewan Cameron, Daniel J. Weiss, Rosalind E. Howes, Katherine E. Battle, Harry S. Gibson, Peter W. Gething
Software Mentions: 4
Published: almost 8 years ago

10.1186/1471-2407-14-739

MicroRNA expression as risk biomarker of breast cancer metastasis: a pilot retrospective case-cohort study
Cited by: 42
Author(s): Augusto L F Marino, Adriane Feijó Evangelista, René Aloísio da Costa Vieira, Taciane Macedo, Lígia Maria Kerr, Lucas Faria Abrahão-Machado, Adhemar Longatto‐Filho, Henrique C. S. Silveira, Márcia Maria Chiquitelli Marques
Software Mentions: 4
Published: almost 12 years ago

10.3389/fnut.2021.640100

Safety and Modulatory Effects of Humanized Galacto-Oligosaccharides on the Gut Microbiome
Cited by: 7
Author(s): Jason W. Arnold, Hunter D. Whittington, Sue F. Dagher, Jeffery Roach, M. Andrea Azcárate-Peril, José M. Bruno-Bárcena
Software Mentions: 4
Published: over 5 years ago

10.3389/fnut.2020.00083

Vitamin B12 Deficiency Alters the Gut Microbiota in a Murine Model of Colitis
Cited by: 37
Author(s): Eberhard Lurz, Rachael Horne, Pekka Määttänen, Richard Wu, Steven R. Botts, Bo Li, Laura Rossi, Kathene C. Johnson‐Henry, Agostino Pierro, Michael G. Surette, Philip M. Sherman
Software Mentions: 4
Published: about 6 years ago

10.1128/AEM.02658-18

Bacterial Dispersers along Preferential Flow Paths of a Clay Till Depth Profile
Cited by: 5
Author(s): Urse Scheel Krüger, Arnaud Dechesne, Friedhelm Bak, Nora Badawi, Ole Nybroe, Jens Aamand
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pcbi.1009227

Relating simulation studies by provenance—Developing a family of Wnt signaling models
Cited by: 5
Author(s): Kai Budde, Jacob Smith, Pia Wilsdorf, Fiete Haack, Adelinde M. Uhrmacher
Software Mentions: 4
Published: about 5 years ago

10.1186/s13568-019-0747-z

Dietary supplementation with fermented Mao-tai lees beneficially affects gut microbiota structure and function in pigs
Cited by: 18
Author(s): Huan Li, Huawei Li, Peifeng Xie, Zhihua Li, Yulong Yin, François Blachier, Xiangfeng Kong
Software Mentions: 4
Published: over 7 years ago

10.3390/ijms22020574

The Resistance of Narrow-Leafed Lupin to Diaporthe toxica Is Based on the Rapid Activation of Defense Response Genes
Cited by: 7
Author(s): Michał Książkiewicz, Sandra Rychel-Bielska, Piotr Plewiński, Maria Nuc, Witold Irzykowski, M. Jędryczka, Paweł Krajewski
Software Mentions: 4
Published: over 5 years ago

10.3390/ijerph17082964

The Association of Work Satisfaction and Burnout Risk in Endoscopy Nursing Staff—A Cross-Sectional Study Using Canonical Correlation Analysis
Cited by: 12
Author(s): Charles Christian Adarkwah, Oliver Hirsch
Software Mentions: 4
Published: over 6 years ago

10.3389/fonc.2020.592811

Exploration of the Prognostic and Immunotherapeutic Value of B and T Lymphocyte Attenuator in Skin Cutaneous Melanoma
Cited by: 6
Author(s): Xubin Dong, Jingjing Song, Buran Chen, Yufeng Qi, Wenjie Jiang, Huihui Li, Danni Zheng, Yinghao Wang, Xiaohua Zhang, Haiguang Liu
Software Mentions: 4
Published: over 5 years ago

10.3389/fonc.2021.650828

Integrative Analysis of a Novel Eleven-Small Nucleolar RNA Prognostic Signature in Patients With Lower Grade Glioma
Cited by: 6
Author(s): Teng Deng, Yizhen Gong, Xiwen Liao, Xiangkun Wang, Xin Zhou, Guangzhi Zhu, Ligen Mo
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pbio.3000711

Single-cell transcription analysis of Plasmodium vivax blood-stage parasites identifies stage- and species-specific profiles of expression
Cited by: 49
Author(s): Juliana M. Sá, Matthew Cannon, Ramoncito L. Caleon, Thomas E. Wellems, David Serre
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pbio.3000166

Ancient RNA from Late Pleistocene permafrost and historical canids shows tissue-specific transcriptome survival
Cited by: 32
Author(s): Oliver Smith, Glenn Dunshea, Mikkel‐Holger S. Sinding, Sergey Fedorov, Mietje Germonpré, Hervé Bocherens, M. Thomas P. Gilbert
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pbio.2004986

Canonical PRC2 function is essential for mammary gland development and affects chromatin compaction in mammary organoids
Cited by: 10
Author(s): Ewa M. Michalak, Michael J. G. Milevskiy, Rachel Joyce, Johanna F. Dekkers, Paul Jamieson, Bhupinder Pal, Caleb A. Dawson, Yifang Hu, Stuart H. Orkin, Warren S. Alexander, Geoffrey J. Lindeman, Gordon K. Smyth, Jane E. Visvader
Software Mentions: 4
Published: about 8 years ago

10.3389/fcvm.2021.628885

Single-Cell Transcriptome Analysis Decipher New Potential Regulation Mechanism of ACE2 and NPs Signaling Among Heart Failure Patients Infected With SARS-CoV-2
Cited by: 13
Author(s): Mengqiu Ma, Yanhua Xu, Yang Su, Sang‐Bing Ong, Xingdong Hu, Min Chai, Maojun Zhao, Hong Li, Xiaojuan Fan, Yingjie Chen, Dan Xu, Xiaojiang Xu
Software Mentions: 4
Published: over 5 years ago

10.7717/peerj-cs.156

Comparison and benchmark of name-to-gender inference services
Cited by: 197
Author(s): L. Santamaría, Helena Mihaljević
Software Mentions: 4
Published: about 8 years ago

10.1186/s12909-015-0358-6

Developing a clinical teaching quality questionnaire for use in a university osteopathic pre-registration teaching program
Cited by: 12
Author(s): Brett Vaughan
Software Mentions: 4
Published: over 11 years ago

10.3390/ani11051336

Use of the Milan Pet Quality of Life Instrument (MPQL) to Measure Pets’ Quality of Life during COVID-19
Cited by: 14
Author(s): Patrizia Piotti, Christos Karagiannis, Liam Satchell, M. Michelazzi, M. Albertini, Enrico Alleva, Federica Pirrone
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pntd.0001409

A Deep Sequencing Approach to Comparatively Analyze the Transcriptome of Lifecycle Stages of the Filarial Worm, Brugia malayi
Cited by: 86
Author(s): Young Jun Choi, Elodie Ghedin, Matthew Berriman, Jacqueline A. McQuillan, Nancy Holroyd, George F. Mayhew, Bruce M. Christensen, Michelle L. Michalski
Software Mentions: 4
Published: over 14 years ago

10.1186/s12967-020-02327-7

Identification of hub genes in papillary thyroid carcinoma: robust rank aggregation and weighted gene co-expression network analysis
Cited by: 15
Author(s): Yang Liu, Ting‐Yu Chen, Zhi-Yan Yang, Wei Bin Fang, Qian Wu, Zhang Chao
Software Mentions: 4
Published: over 6 years ago

10.3390/ijms21020440

Anisotropic Platinum Nanoparticle-Induced Cytotoxicity, Apoptosis, Inflammatory Response, and Transcriptomic and Molecular Pathways in Human Acute Monocytic Leukemia Cells
Cited by: 24
Author(s): Sangiliyandi Gurunathan, M. Jeyaraj, Hyeonwoo La, Hyunjin Yoo, Youngsok Choi, Jeong Tae, Chankyu Park, Jin‐Hoi Kim, Kwonho Hong
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0236679

Characterisation of protein isoforms encoded by the Drosophila Glycogen Synthase Kinase 3 gene shaggy
Cited by: 4
Author(s): Dagmara Korona, Daniel J.H. Nightingale, Bertrand Fabre, Michael G. Nelson, Bettina Fischer, Glynnis Johnson, Jonathan G. Lees, Simon J. Hubbard, Kathryn S. Lilley, Steven Russell
Software Mentions: 4
Published: about 6 years ago

10.3390/md11083077

Double Strand Breaks and Cell-Cycle Arrest Induced by the Cyanobacterial Toxin Cylindrospermopsin in HepG2 Cells
Cited by: 41
Author(s): Alja Štraser, Metka Filipič, Matjaž Novak, Bojana Žegura
Software Mentions: 4
Published: almost 13 years ago

10.1371/journal.pone.0192947

Modulation of the peripheral blood transcriptome by the ingestion of probiotic yoghurt and acidified milk in healthy, young men
Cited by: 26
Author(s): Kathryn Burton, Grégory Pimentel, Nadine Zangger, Nathalie Vionnet, Jocelyne Drai, P. G. McTernan, François P. Pralong, Mauro Delorenzi, Guy Vergères
Software Mentions: 4
Published: over 8 years ago

10.3389/fphys.2020.00311

Exercise Reverses the Alterations in Gut Microbiota Upon Cold Exposure and Promotes Cold-Induced Weight Loss
Cited by: 8
Author(s): Yan Meng, Lina Chen, Lin Wei, Hongjuan Wang, Guangming Xu, Xiquan Weng
Software Mentions: 4
Published: over 6 years ago

10.1038/s41598-020-61817-2

Blood meal sources and bacterial microbiome diversity in wild-caught tsetse flies
Cited by: 21
Author(s): Alex Kiarie Gaithuma, Junya Yamagishi, Kyoko Hayashida, Nobuyoshi Kawai, Boniface Namangala, Chihiro Sugimoto
Software Mentions: 4
Published: over 6 years ago

10.3389/fphys.2020.609335

Exhaustive Exercise and Post-exercise Protein Plus Carbohydrate Supplementation Affect Plasma and Urine Concentrations of Sulfur Amino Acids, the Ratio of Methionine to Homocysteine and Glutathione in Elite Male Cyclists
Cited by: 8
Author(s): Trond E. Olsen, Ove Sollie, Eha Nurk, Cheryl Turner, Fredrik Jernerén, John L. Ivy, Kathrine J. Vinknes, Matthieu Clauss, Helga Refsum, Jørgen Jensen
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-020-70353-y

Single-cell RNA sequencing uncovers heterogenous transcriptional signatures in macrophages during efferocytosis
Cited by: 43
Author(s): Connor Lantz, Behram Radmanesh, Esther Liu, Edward B. Thorp, Jennie Lin
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.ppat.1009107

Mycolactone toxin induces an inflammatory response by targeting the IL-1β pathway: Mechanistic insight into Buruli ulcer pathophysiology
Cited by: 23
Author(s): Mélanie Foulon, Marie Robbe-Saule, Jérémy Manry, Lucille Esnault, Yan Boucaud, Alexandre Alcaïs, Marine Malloci, Martine Fanton d’Andon, Tiffany Beauvais, Nathalie Labarrière, Pascale Jeannin, Laurent Abel, Jean‐Paul Saint‐André, Anne Croué, Yves Delneste, Ivo Gomperts Boneca, Laurent Marsollier, Estelle Marion
Software Mentions: 4
Published: over 5 years ago

10.3390/cells10061291

Innate and Adaptive Immune Genes Associated with MERS-CoV Infection in Dromedaries
Cited by: 6
Author(s): Sara Lado, Jean P. Elbers, Martin Plášil, Tom Loney, Pia Weidinger, Jeremy V. Camp, Jolanta Kolodziejek, Ján Futas, Dafalla A. Kannan, Pablo Orozco‐terWengel, Petr Hořín, Norbert Nowotny, Pamela A. Burger
Software Mentions: 4
Published: about 5 years ago

10.3389/fpls.2018.00574

The Mating System of the Wild-to-Domesticated Complex of Gossypium hirsutum L. Is Mixed
Cited by: 12
Author(s): Rebeca Velázquez-López, Ana Wegier, Valeria Alavez, Javier Pérez-López, Valeria Vázquez-Barrios, Denise Arroyo-Lambaer, Alejandro Ponce‐Mendoza, William E. Kunin
Software Mentions: 4
Published: over 8 years ago

10.1186/1471-2105-15-198

CIRCUS: a package for Circos display of structural genome variations from paired-end and mate-pair sequencing data
Cited by: 35
Author(s): Delphine Naquin, Yves d’Aubenton-Carafa, Claude Thermes, Maud Silvain
Software Mentions: 4
Published: about 12 years ago

10.18632/oncotarget.20940

<i>PTEN</i> loss is associated with prostate cancer recurrence and alterations in tumor DNA methylation profiles
Cited by: 29
Author(s): Milan S. Geybels, Min Fang, Jonathan L. Wright, Xiaoyu Qu, Marina Bibikova, Brandy Klotzle, Jie Fan, Ziding Feng, Elaine A. Ostrander, Peter S. Nelson, Janet L. Stanford
Software Mentions: 4
Published: almost 9 years ago

10.3389/fpls.2012.00202

A High-Throughput Method for Illumina RNA-Seq Library Preparation
Cited by: 134
Author(s): Ravi Kumar, Yasunori Ichihashi, Seisuke Kimura, Daniel H. Chitwood, Lauren R. Headland, Jie Peng, Julin N. Maloof, Neelima Sinha
Software Mentions: 4
Published: over 14 years ago

10.18632/oncotarget.14303

Pan-organ transcriptome variation across 21 cancer types
Cited by: 6
Author(s): Wangxiong Hu, Yanmei Yang, Xiaofen Li, Shu Zheng
Software Mentions: 4
Published: over 9 years ago

10.1155/2020/6420425

Protein Kinase A Is Involved in Neuropathic Pain by Activating the p38MAPK Pathway to Mediate Spinal Cord Cell Apoptosis
Cited by: 9
Author(s): Yajun Deng, Liang Yang, Qiqi Xie, Fengbiao Yang, Guoqiang Li, Guang-Zhi Zhang, Shaoping Li, Zhi-Xi Wu, Jing Wang, Xuewen Kang
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0093846

The SLE Transcriptome Exhibits Evidence of Chronic Endotoxin Exposure and Has Widespread Dysregulation of Non-Coding and Coding RNAs
Cited by: 104
Author(s): Lei Shi, Zhe Zhang, Angela M Yu, Wei Wang, Zhi Wei, Ehtisham Akhter, Kelly Maurer, Patrícia Costa-Reis, Li Song, Michelle Petri, Kathleen E. Sullivan
Software Mentions: 4
Published: over 12 years ago

10.1155/2020/8291036

A Novel Signature Based on mTORC1 Pathway in Hepatocellular Carcinoma
Cited by: 4
Author(s): Zhuomao Mo, Shuqiao Zhang, Shijun Zhang
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12885-016-2652-z

A nomogram for predicting pathological complete response in patients with human epidermal growth factor receptor 2 negative breast cancer
Cited by: 9
Author(s): Xi Jin, Yi Jiang, Sheng Chen, Ke Yu, Ding Ma, Wei Sun, Zhi Min Shao, Gen Hong Di
Software Mentions: 4
Published: about 10 years ago

10.1371/journal.pone.0169648

The Smc5/6 Complex Restricts HBV when Localized to ND10 without Inducing an Innate Immune Response and Is Counteracted by the HBV X Protein Shortly after Infection
Cited by: 107
Author(s): Congrong Niu, Christine M. Livingston, Li Li, Rudolf K. F. Beran, Stéphane Daffis, Dhivya Ramakrishnan, Dara Burdette, Leanne Peiser, Eduardo Salas, Hilario J. Ramos, Mei Yu, Guofeng Cheng, Michel Strubin, William E. Delaney, Simon P. Fletcher
Software Mentions: 4
Published: over 9 years ago

10.2196/jmir.6240

Impact of Predicting Health Care Utilization Via Web Search Behavior: A Data-Driven Analysis
Cited by: 33
Author(s): Vibhu Agarwal, L. Zhang, Josh Zhu, Shiyuan Fang, Tim Cheng, Chloe Hong, Nigam H. Shah
Software Mentions: 4
Published: almost 10 years ago

10.3390/ijms22041632

Construction and Validation of a Prognostic Gene-Based Model for Overall Survival Prediction in Hepatocellular Carcinoma Using an Integrated Statistical and Bioinformatic Approach
Cited by: 8
Author(s): Eskezeia Y. Dessie, Siang-Jyun Tu, Hui-Shan Chiang, Jeffrey J. P. Tsai, Ya‐Sian Chang, Jan-Gowth Chang, Ka-Lok Ng
Software Mentions: 4
Published: over 5 years ago

10.3390/ijms22010135

Circulating tRNA Fragments as a Novel Biomarker Class to Distinguish Acute Stroke Subtypes
Cited by: 13
Author(s): Thủy Nguyễn, M. Leontien van der Bent, Marieke J.H. Wermer, Ido R. van den Wijngaard, Erik W. van Zwet, Bas de Groot, Paul H.A. Quax, Nyika D. Kruyt, A. Yaël Nossent
Software Mentions: 4
Published: over 5 years ago

10.1016/j.crimmu.2021.07.002

Tissue macrophages and interferon-gamma signalling control blood-stage Plasmodium chabaudi infections derived from mosquito-transmitted parasites
Cited by: 2
Author(s): Katrien Deroost, Christopher Alder, Caroline Hosking, Sarah McLaughlin, Jing-wen Lin, Matthew D. Lewis, Yolanda Saavedra-Torres, John W.G. Addy, Prisca Lévy, Maria Giorgalli, Jean Langhorne
Software Mentions: 4
Published: over 5 years ago

10.3389/fnagi.2017.00383

Hippocampal Transcriptomic Profiles: Subfield Vulnerability to Age and Cognitive Impairment
Cited by: 38
Author(s): Lara Ianov, Matt De Both, Monica K. Chawla, Asha Rani, Andrew Kennedy, Ignazio S. Piras, Jeremy J. Day, Ashley L. Siniard, Ashok Kumar, J. David Sweatt, Carol A. Barnes, Matthew J. Huentelman, Thomas C. Foster
Software Mentions: 4
Published: over 8 years ago

10.1038/s42003-020-1028-8

Spatio-molecular domains identified in the mouse subthalamic nucleus and neighboring glutamatergic and GABAergic brain structures
Cited by: 31
Author(s): Åsa Wallén-Mackenzie, Sylvie Dumas, Maria Papathanou, Mihaela M. Martis, Bianca Vlcek, Niclas König, Åsa K. Björklund
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0198191

Early responses to dehydration in contrasting wild Arachis species
Cited by: 21
Author(s): C. C. Vinson, Ana Paula Zotta Mota, Thais Nicolini Oliveira, Larissa Arrais Guimarães, Soraya C. M. Leal‐Bertioli, Thomas Christopher Rhys Williams, Alexandre Lima Nepomuceno, Mario Alfredo Passos Saraiva, Ana Cláudia Guerra Araújo, P. M. Guimarães, Ana Cristina Miranda Brasileiro
Software Mentions: 4
Published: about 8 years ago

10.1038/s41598-020-70368-5

Transcriptomic analysis delineates potential signature genes and miRNAs associated with the pathogenesis of asthma
Cited by: 16
Author(s): Prithvi Singh, Archana Sharma, Jha R, Shweta Arora, Rafiq Ahmad, Arshad Husain Rahmani, Saleh A. Almatroodi, Ravins Dohare, Mansoor Ali Syed
Software Mentions: 4
Published: about 6 years ago

10.1186/s40168-018-0480-x

Tracking antibiotic resistance gene pollution from different sources using machine-learning classification
Cited by: 100
Author(s): Li-Guan Li, Xiaole Yin, Tong Zhang
Software Mentions: 4
Published: about 8 years ago

10.3390/biomedicines9030266

Dysbiosis and Enhanced Beta-Defensin Production in Hair Follicles of Patients with Lichen Planopilaris and Frontal Fibrosing Alopecia
Cited by: 6
Author(s): Andria Constantinou, Katarzyna Polak-Witka, Marios Tomazou, Anastasis Oulas, Varvara Kanti, Rolf Schwarzer, Johannes Helmuth, Anke Edelmann, Ulrike Blume-Peytavi, George M. Spyrou, Annika Vogt
Software Mentions: 4
Published: over 5 years ago

10.1186/s12983-021-00416-x

Lack of impact of radiation on blood physiology biomarkers of Chernobyl tree frogs
Cited by: 5
Author(s): Pablo Burraco, Jean‐Marc Bonzom, Clément Car, K. Beaugelin­-Seiller, Sergey Gashchak, Germán Orizaola
Software Mentions: 4
Published: about 5 years ago

10.1186/s40168-017-0331-1

Members of the Candidate Phyla Radiation are functionally differentiated by carbon- and nitrogen-cycling capabilities
Cited by: 110
Author(s): Robert Danczak, Michael D. Johnston, Chris Kenah, Michael T. Slattery, Kelly Wrighton, Michael J. Wilkins
Software Mentions: 4
Published: almost 9 years ago

10.7554/eLife.31437

The formation of the light-sensing compartment of cone photoreceptors coincides with a transcriptional switch
Cited by: 29
Author(s): Janine M Daum, Özkan Keles, Sjoerd J.B. Holwerda, Hubertus Kohler, Filippo M. Rijli, Michael Stadler, Botond Roska
Software Mentions: 4
Published: almost 9 years ago

10.1186/s40168-018-0553-x

Longitudinal development of the dust microbiome in a newly opened Norwegian kindergarten
Cited by: 23
Author(s): Anders Benteson Nygaard, Colin Charnock
Software Mentions: 4
Published: almost 8 years ago

10.7554/eLife.66128

High social status males experience accelerated epigenetic aging in wild baboons
Cited by: 48
Author(s): Jordan A Anderson, Rachel A Johnston, Amanda J. Lea, Fernando A. Campos, Tawni Voyles, Mercy Akinyi, Susan C. Alberts, Elizabeth A. Archie, Jenny Tung
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.69808

Common host variation drives malaria parasite fitness in healthy human red cells
Cited by: 15
Author(s): Emily R. Ebel, Frans A. Kuypers, Carrie Lin, Dmitri A. Petrov, Elizabeth S. Egan
Software Mentions: 4
Published: almost 5 years ago

10.7554/eLife.67481

SORBS2 is a genetic factor contributing to cardiac malformation of 4q deletion syndrome patients
Cited by: 7
Author(s): Fei Liang, Bo Wang, Juan Geng, Guoling You, Jingjing Fa, Min Zhang, Hunying Sun, Huiwen Chen, Qin Fu, Xiaoqing Zhang, Zhen Zhang
Software Mentions: 4
Published: about 5 years ago

10.1155/2021/5554342

Development and Validation of a Robust Immune-Related Prognostic Signature for Gastric Cancer
Cited by: 7
Author(s): Junyu Huo, Liqun Wu, Yunjin Zang
Software Mentions: 4
Published: over 5 years ago

10.1534/g3.117.042531

Genome-Wide Exome Analysis of <i>Cmv5</i>-Disparate Mouse Strains that Differ in Host Resistance to Murine Cytomegalovirus Infection
Cited by: 3
Author(s): Alyssa Gillespie, Heather Lee, Catherine Robertson, Maya Cabot, Michael G. Brown
Software Mentions: 4
Published: about 9 years ago

10.1111/jcmm.15393

DNA methylation profiling to predict recurrence risk in stage Ι lung adenocarcinoma: Development and validation of a nomogram to clinical management
Cited by: 12
Author(s): Xianxiong Ma, Jiancheng Cheng, Peng Zhao, Lei Li, Kaixiong Tao, Hengyu Chen
Software Mentions: 4
Published: about 6 years ago

10.1534/g3.117.300245

Genome-Wide Screen for<i>Saccharomyces cerevisiae</i>Genes Contributing to Opportunistic Pathogenicity in an Invertebrate Model Host
Cited by: 7
Author(s): Sujal Phadke, Calum J. Maclean, Serena Zhao, Emmi A. Mueller, Lucas A. Michelotti, Kaitlyn L. Norman, Anuj Kumar, Timothy Y. James
Software Mentions: 4
Published: over 8 years ago

10.1186/s40168-020-00827-8

Disentangling the mechanisms shaping the surface ocean microbiota
Cited by: 131
Author(s): Ramiro Logares, Ina Maria Deutschmann, Pedro C. Junger, Caterina R. Giner, Anders K. Krabberød, Thomas Sebastian Benedikt Schmidt, Laura Rubinat-Ripoll, Mireia Mestre, Guillem Salazar, Clara Ruiz‐González, Marta Sebastián, Colomban de Vargas, Silvia G. Acinas, Carlos M. Duarte, Josep M. Gasol, Ramón Massana
Software Mentions: 4
Published: over 6 years ago

10.1038/s41422-020-00445-x

Tissue-specific transcriptional imprinting and heterogeneity in human innate lymphoid cells revealed by full-length single-cell RNA-sequencing
Cited by: 88
Author(s): Luca Mazzurana, Paulo Czarnewski, Viktor Jönsson, Leif Wigge, Markus Ringnér, Teresa C. Williams, Avinash Ravindran, Åsa K. Björklund, Jesper Säfholm, Gunnar Nilsson, Sven Erik Dahlén, Ann Charlotte Orre, Mamdoh Al‐Ameri, Charlotte Höög, Charlotte Hedin, Sylwester Szczegielniak, Sven Almér, Jenny Mjösberg
Software Mentions: 4
Published: over 5 years ago

10.1534/g3.117.300550

Genetic Loci Governing Androgenic Capacity in Perennial Ryegrass (<i>Lolium perenne</i> L.)
Cited by: 8
Author(s): Rachel F. Begheyn, Steven Yates, Timothy Sykes, Bruno Studer
Software Mentions: 4
Published: about 8 years ago

10.7150/ijms.49576

Prognosis Prediction for Colorectal Cancer Patients: A Risk Score Based on The Metabolic-Related Genes
Cited by: 1
Author(s): Yongqu Lu, Xin Zhou, Zhenzhen Liu, Wendong Wang, Siyi Lu, Wei Fu
Software Mentions: 4
Published: over 5 years ago

10.3390/ani11030865

Habitat Elevation Shapes Microbial Community Composition and Alter the Metabolic Functions in Wild Sable (Martes zibellina) Guts
Cited by: 7
Author(s): Lantian Su, Xinxin Liu, Guang-Yao Jin, Yue Ma, Haoxin Tan, Muhammed Abdul Khalid, Martin Romantschuk, Shan Yin, Nan Hui
Software Mentions: 4
Published: over 5 years ago

10.7554/eLife.67312

YAP and TAZ are transcriptional co-activators of AP-1 proteins and STAT3 during breast cellular transformation
Cited by: 43
Author(s): Lizhi He, Henry E. Pratt, Mingshi Gao, Fengxiang Wei, Zhiping Weng, Kevin Struhl
Software Mentions: 4
Published: almost 5 years ago

10.1084/jem.20201189

αβγδ T cells play a vital role in fetal human skin development and immunity
Cited by: 17
Author(s): René Reitermaier, Thomas Krausgruber, Nikolaus Fortelny, Tanya Ayub, Pablo A. Vieyra‐Garcia, Philip Kienzl, Peter Wolf, Anke Scharrer, Christian Fiala, Marita Kölz, Manuela Hiess, Martin Vierhapper, Christopher Schuster, Andreas Spittler, Christof Worda, Wolfgang Weninger, Christoph Bock, Wolfgang Eppel, Adelheid Elbe‐Bürger
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0247378

Stool metabolome-microbiota evaluation among children and adolescents with obesity, overweight, and normal-weight using 1H NMR and 16S rRNA gene profiling
Cited by: 11
Author(s): José Diógenes Jaimes, Andrea Slavíčková, Jakub Hurych, Ondřej Cinek, Ben Nichols, Lucie Vodolánová, K. Černý, Jaroslav Havlík
Software Mentions: 4
Published: over 5 years ago

10.1534/g3.119.400777

<i>rmtA</i>-Dependent Transcriptome and Its Role in Secondary Metabolism, Environmental Stress, and Virulence in<i>Aspergillus flavus</i>
Cited by: 5
Author(s): Timothy Satterlee, Sarah Entwistle, Yanbin Yin, J. W. Cary, Matthew D. Lebar, Liliana Losada, Ana M. Calvo
Software Mentions: 4
Published: over 6 years ago

10.1186/s40168-018-0610-5

The bacterial community significantly promotes cast iron corrosion in reclaimed wastewater distribution systems
Cited by: 30
Author(s): Guijuan Zhang, Bing Li, Jie Liu, Mingqiang Luan, Yao Long, Xiaotao Jiang, Ke Yu, Yuntao Guan
Software Mentions: 4
Published: over 7 years ago

10.1534/g3.119.400716

Whole Genome Sequencing and Comparative Genomics of Two Nematicidal <i>Bacillus</i> Strains Reveals a Wide Range of Possible Virulence Factors
Cited by: 9
Author(s): Nik Susič, Sandra Janežič, Maja Rupnik, Barbara Gerič Stare
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0187287

EAMA: Empirically adjusted meta-analysis for large-scale simultaneous hypothesis testing in genomic experiments
Cited by: 3
Author(s): Sinjini Sikdar, Somnath Datta, Susmita Datta
Software Mentions: 4
Published: almost 9 years ago

10.1186/s13195-018-0394-7

Alzheimer’s disease master regulators analysis: search for potential molecular targets and drug repositioning candidates
Cited by: 62
Author(s): Daiani Machado de Vargas, Marco Antônio De Bastiani, Eduardo R. Zimmer, Fábio Klamt
Software Mentions: 4
Published: about 8 years ago

10.7554/eLife.60645

Simultaneous quantification of mRNA and protein in single cells reveals post-transcriptional effects of genetic variation
Cited by: 28
Author(s): Christian Brion, Sheila Lutz, Frank W. Albert
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0021495

MicroRNA Expression Profiling Reveals MiRNA Families Regulating Specific Biological Pathways in Mouse Frontal Cortex and Hippocampus
Cited by: 70
Author(s): Juuso Juhila, Tessa Sipilä, Katherine Icay, Daniel Nicorici, Pekka Ellonen, Aleksi Kallio, Eija Korpelainen, Dario Greco, Iiris Hovatta
Software Mentions: 4
Published: about 15 years ago

10.1093/g3journal/jkaa042

Genetic mapping and transcriptomic characterization of a new fuzzless-tufted cottonseed mutant
Cited by: 2
Author(s): Qian Zhu, Warwick N. Stiller, Philippe Moncuquet, Stuart Gordon, Yuman Yuan, Scott Barnes, Iain W. Wilson
Software Mentions: 4
Published: over 5 years ago

10.1093/g3journal/jkab072

Photoperiod-dependent developmental reprogramming of the transcriptional response to seawater entry in Atlantic salmon (Salmo salar)
Cited by: 2
Author(s): Marianne Iversen, Teshome Dagne Mulugeta, Alexander C. West, Even H. Jørgensen, Samuel Martín, Simen Rød Sandve, David G. Hazlerigg
Software Mentions: 4
Published: over 5 years ago

10.3390/genes7040013

Bioinformatics Analysis of MAPKKK Family Genes in Medicago truncatula
Cited by: 10
Author(s): Wei Li, Hanyun Xu, Ying Liu, Lili Song, Changhong Guo, Yongjun Shu
Software Mentions: 4
Published: over 10 years ago

10.3390/nu10050576

Microbiome Responses to an Uncontrolled Short-Term Diet Intervention in the Frame of the Citizen Science Project
Cited by: 92
Author(s): Natalia Klimenko, Alexander V. Tyakht, Anna Popenko, Anatoly S. Vasiliev, Ilya Altukhov, Dimitry D Ischenko, Tatiana I. Shashkova, Daria Efimova, Dimitri A. Nikogosov, Dmitrii A. Osipenko, Sergey Musienko, Kseniya S. Selezneva, Ancha Baranova, Alexander Kurilshikov, Stepan V. Toshchakov, Aleksei A. Korzhenkov, Nazar I. Samarov, Margarita Shevchenko, A.V. Tepliuk, Dmitry Alexeev
Software Mentions: 4
Published: over 8 years ago

10.1038/s41598-020-75984-9

Omics approaches for conservation biology research on the bivalve Chamelea gallina
Cited by: 8
Author(s): Federica Carducci, Maria Assunta Biscotti, Emiliano Trucchi, Maria Giuliani, Stefania Gorbi, Alessandro Coluccelli, Marco Barucca, Adriana Canapa
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12940-019-0482-6

Two-step approach for assessing the health effects of environmental chemical mixtures: application to simulated datasets and real data from the Navajo Birth Cohort Study
Cited by: 4
Author(s): Li Luo, Laurie G. Hudson, Johnnye Lewis, Ji‐Hyun Lee
Software Mentions: 4
Published: over 7 years ago

10.1038/s41416-019-0387-8

A novel approach to modelling transcriptional heterogeneity identifies the oncogene candidate CBX2 in invasive breast carcinoma
Cited by: 23
Author(s): Daniel G. Piqué, Cristina Montagna, John M. Greally, Jessica C. Mar
Software Mentions: 4
Published: over 7 years ago

10.3390/genes10030233

The Patchy Distribution of Restriction–Modification System Genes and the Conservation of Orphan Methyltransferases in Halobacteria
Cited by: 26
Author(s): Matthew S. Fullmer, Matthew Ouellette, Artemis S. Louyakis, R. Thane Papke, J. Peter Gogarten
Software Mentions: 4
Published: over 7 years ago

10.18632/oncotarget.11733

DMBA induced mouse mammary tumors display high incidence of activating <i>Pik3caH1047</i> and loss of function <i>Pten</i> mutations
Cited by: 45
Author(s): Martı́n C. Abba, Yi Zhong, Jae-Ho Lee, Hyunsuk Kil, Yue Lu, Yoko Takata, Melissa S. Simper, Sally Gaddis, Jianjun Shen, C. Marcelo Aldaz
Software Mentions: 4
Published: almost 10 years ago

10.1038/s41419-018-0841-1

The detrimental effects of glucocorticoids exposure during pregnancy on offspring’s cardiac functions mediated by hypermethylation of bone morphogenetic protein-4
Cited by: 13
Author(s): Jun Peng, Yuhao Zhou, Zhiyu Zhang, Zhiming Wang, Ling-Tong Gao, Xiao Zhang, Fang Zhou, Guangyao Li, Huaiyan Chen, Hongxing Yang, Lu Gao
Software Mentions: 4
Published: about 8 years ago

10.1002/ece3.6203

Caterpillars on a phytochemical landscape: The case of alfalfa and the Melissa blue butterfly
Cited by: 6
Author(s): Matthew L. Forister, Su’ad A. Yoon, Casey S. Philbin, Craig D. Dodson, Bret Hart, Joshua G. Harrison, Oren Shelef, James A. Fordyce, Zachary H. Marion, Chris C. Nice, Lora A. Richards, C. Alex Buerkle, Zachariah Gompert
Software Mentions: 4
Published: over 6 years ago

10.7554/eLife.21697

Loss of Dnmt3a and Dnmt3b does not affect epidermal homeostasis but promotes squamous transformation through PPAR-γ
Cited by: 43
Author(s): Lorenzo Rinaldi, Alexandra Avgustinova, Mercé Martı́n, Debayan Datta, Guiomar Solanas, Neus Prats, Salvador Aznar Benitah
Software Mentions: 4
Published: over 9 years ago

10.1016/j.heliyon.2021.e07748

Massive surge of mRNA expression of clonal B-cell receptor in patients with COVID-19
Cited by: 4
Author(s): Yohei Funakoshi, Goh Ohji, Kimikazu Yakushijin, Kei Ebisawa, Yu Arakawa, Jun Saegusa, Hidenari Matsumoto, Tatsuya Imanishi, Eriko Fukuda, Takaji Matsutani, Yasuko Mori, Kentaro Iwata, Hironobu Minami
Software Mentions: 4
Published: about 5 years ago

10.1155/2020/9180732

15-lncRNA-Based Classifier-Clinicopathologic Nomogram Improves the Prediction of Recurrence in Patients with Hepatocellular Carcinoma
Cited by: 8
Author(s): Qiong Zhang, Gang Ning, Hongye Jiang, Yanlin Huang, Jinsong Piao, Zhen Chen, Xiaojie Tan, Jiangyu Zhang, Genglong Liu
Software Mentions: 4
Published: over 5 years ago

10.1038/s42003-021-02203-0

The chaperonin CCT8 controls proteostasis essential for T cell maturation, selection, and function
Cited by: 5
Author(s): Bergithe E. Oftedal, Stefano Maio, Adam E. Handel, White Mpj., Duncan Howie, Simon Davis, Nicolas Prevot, Ioanna A. Rota, Mary E. Deadman, Benedikt M. Kessler, Román Fischer, Nikolaus S. Trede, Erdinç Sezgin, Rick M. Maizels, G A Holländer
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.ppat.1005702

Two Escape Mechanisms of Influenza A Virus to a Broadly Neutralizing Stalk-Binding Antibody
Cited by: 72
Author(s): Ningli Chai, Lee R. Swem, Mike Reichelt, Haiyin Chen-Harris, Luis Elizabeth, Summer Park, Ashley E. Fouts, P.J. Lupardus, Thomas D. Wu, Olga Li, Jacqueline McBride, Michael C. Lawrence, Min Xu, Man‐Wah Tan
Software Mentions: 4
Published: about 10 years ago