Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/cancers12113425

https://doi.org/10.3390/cancers12113425

The Intersection between Oral Microbiota, Host Gene Methylation and Patient Outcomes in Head and Neck Squamous Cell Carcinoma

Cited by: 29
Author(s): Zigui Chen, Pak-Kin Wong, Cherrie W K Ng, Linda Lan, S. Fung, Jing W Li, Liuyang Cai, Pu Liao, Qianqian Mou, Sunny H. Wong, William Ka Kei Wu, Ryan J. Li, Katie Meehan, Vivian Wai Yan Lui, Chit Chow, Kwok Wai Lo, Amy B.W. Chan, Siaw Shi Boon, Eric S. H. Lau, Zenon W C Yeung, K.C. Allen Chan, Eddy W.Y. Wong, Alfred Sze‐Lok Cheng, Jun Yu, Paul Kay Sheung Chan, Jason Ying Kuen Chan
Published: about 4 years ago

Software Mentions 4

bioconductor: dada2
Accurate, high-resolution sample inference from amplicon sequencing data
Papers that mentioned: 274
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: methylKit
DNA methylation analysis from high-throughput bisulfite sequencing results
Papers that mentioned: 154
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292