10.1186/s40462-021-00272-8

Adaptive drift and barrier-avoidance by a fly-forage migrant along a climate-driven flyway
Cited by: 9
Author(s): Wouter M. G. Vansteelant, Laura Gangoso, W. Bouten, Duarte S. Viana, Jordi Figuerola
Software Mentions: 5
Published: about 5 years ago

10.1186/1471-2105-13-113

Molecular ecological network analyses
Cited by: 1,612
Author(s): Ye Deng, Yi-Huei Jiang, Yunfeng Yang, Zhili He, Feng Luo, Jizhong Zhou
Software Mentions: 5
Published: about 14 years ago

10.3389/fonc.2020.566183

Comprehensive Analysis of CDCAs Methylation and Immune Infiltrates in Hepatocellular Carcinoma
Cited by: 8
Author(s): Yongkang Wang, Yinfeng Yang, Honglei Gao, Ting Ouyang, Luyao Zhang, Jili Hu, Hu Sheng, Hongxing Kan
Software Mentions: 5
Published: over 5 years ago

10.3389/fonc.2020.01119

Identification of RNA: 5-Methylcytosine Methyltransferases-Related Signature for Predicting Prognosis in Glioma
Cited by: 23
Author(s): Peng Wang, Minxian Wu, Zewei Tu, Chuming Tao, Qing Hu, Kuangxun Li, Xingen Zhu, Kai Huang
Software Mentions: 5
Published: almost 6 years ago

10.3390/microorganisms8010134

Doing More with Less: A Comparison of 16S Hypervariable Regions in Search of Defining the Shrimp Microbiota
Cited by: 34
Author(s): Rodrigo García-López, Fernanda Cornejo‐Granados, Alonso A. López-Zavala, Filiberto Sánchez-López, Andrés Cota-Huízar, Rogerio R. Sotelo‐Mundo, Abraham Guerrero, Alfredo Mendoza-Vargas, Bruno Gómez‐Gil, Adrián Ochoa-Leyva
Software Mentions: 5
Published: over 6 years ago

10.1186/s10020-020-00253-4

Genomic imbalances in the placenta are associated with poor fetal growth
Cited by: 13
Author(s): Giulia Gobbo, Yue Yin, Sanaa Choufani, Emma Butcher, John Wei, Evica Rajcan‐Separovic, Hayley Bos, Peter von Dadelszen, Rosanna Weksberg, Wendy P. Robinson, Ryan K. C. Yuen
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-93003-3

A pan-cancer transcriptomic study showing tumor specific alterations in central metabolism
Cited by: 10
Author(s): Ilir Sheraj, Tülïn Güray, Sreeparna Banerjee
Software Mentions: 5
Published: about 5 years ago

10.1093/molbev/msx270

Faster Evolving Primate Genes Are More Likely to Duplicate
Cited by: 35
Author(s): Áine O’Toole, Laurence D. Hurst, Aoife McLysaght
Software Mentions: 5
Published: over 8 years ago

10.3389/fonc.2020.00081

A 6 lncRNA-Based Risk Score System for Predicting the Recurrence of Colon Adenocarcinoma Patients
Cited by: 18
Author(s): Haojie Yang, Hong-Cheng Lin, Lun Hua, Dan Gan, Wei Jin, Can Cui, Yixin Yan, Yiming Qian, Changpeng Han, Zhenyi Wang
Software Mentions: 5
Published: over 6 years ago

10.3390/ijms19020593

Luminal lncRNAs Regulation by ERα-Controlled Enhancers in a Ligand-Independent Manner in Breast Cancer Cells
Cited by: 13
Author(s): Valentina Miano, Giulio Ferrero, Valentina Rosti, Eleonora Manitta, Jamal Elhasnaoui, Giulia Basile, Michele De Bortoli
Software Mentions: 5
Published: over 8 years ago

10.3390/microorganisms8040604

Unraveling Heterogeneity of Coral Microbiome Assemblages in Tropical and Subtropical Corals in the South China Sea
Cited by: 11
Author(s): Sanqiang Gong, Xuejie Jin, Lijuan Ren, Yehui Tan, Xiaomin Xia
Software Mentions: 5
Published: about 6 years ago

10.1186/s12864-016-3135-y

A comparative study of ChIP-seq sequencing library preparation methods
Cited by: 21
Author(s): Arvind Sundaram, Timothy R. Hughes, Shea Biondi, Nathalie Bolduc, Sarah K. Bowman, Andrew Camilli, Yap Ching Chew, Catherine Couture, Andrew Farmer, John P. Jerome, David W. Lazinski, Andrew McUsic, Peng Xu, Kamran Shazand, Feng Xu, Robert Lyle, Gregor D. Gilfillan
Software Mentions: 5
Published: over 9 years ago

10.3389/fcell.2021.669354

Transcriptomic Signature of Human Embryonic Thyroid Reveals Transition From Differentiation to Functional Maturation
Cited by: 7
Author(s): Geert Dom, Petr Dmitriev, Marie-Alexandra Lambot, Guy Van Vliet, Daniel Glinoer, Frédérick Libert, Anne Lefort, Jacques Emile Dumont, Carine Maenhaut
Software Mentions: 5
Published: about 5 years ago

10.7554/eLife.48216

Cis-regulatory basis of sister cell type divergence in the vertebrate retina
Cited by: 28
Author(s): Daniel P. Murphy, Andrew Hughes, Karen A. Lawrence, Connie A. Myers, Joseph C. Corbo
Software Mentions: 5
Published: over 6 years ago

10.3390/microorganisms9050981

The Responses to Long-Term Water Addition of Soil Bacterial, Archaeal, and Fungal Communities in a Desert Ecosystem
Cited by: 5
Author(s): Ying Gao, Xiaotian Xu, Jingtao Ding, Fang Bao, Yashika G. De Costa, Wei-Qin Zhuang, Bo Wu
Software Mentions: 5
Published: about 5 years ago

10.7554/eLife.13926

Activation of individual L1 retrotransposon instances is restricted to cell-type dependent permissive loci
Cited by: 122
Author(s): Claude Philippe, Dulce B Vargas-Landin, Aurélien J. Doucet, Dominic van Essen, Jorge Vera-Otárola, Monika Kuciak, Antoine Corbin, Pilvi Nigumann, Gaël Cristofari
Software Mentions: 5
Published: over 10 years ago

10.3390/microorganisms9020262

Bacterial Diversity and Community Composition Distribution in Cold-Desert Habitats of Qinghai–Tibet Plateau, China
Cited by: 7
Author(s): Wei Zhang, Ali Bahadur, Wasim Sajjad, Gaosen Zhang, Fahad Nasir, Binglin Zhang, Xiukun Wu, Guangxiu Lu, Tuo Chen
Software Mentions: 5
Published: over 5 years ago

10.1186/s12868-021-00635-2

Early postnatal irradiation‐induced age‐dependent changes in adult mouse brain: MRI based characterization
Cited by: 5
Author(s): Bo Ren, Isaac Huen, Zi Jun Wu, Hong Wang, Meng Yun Duan, Ilonka Guenther, Kritika Prakash, Feng Ru Tang
Software Mentions: 5
Published: about 5 years ago

10.1038/s41598-020-63278-z

Phylogenetic Inference of H3N2 Canine Influenza A Outbreak in Ontario, Canada in 2018
Cited by: 6
Author(s): Wanhong Xu, J. Scott Weese, Davor Ojkić, Oliver Lung, Katherine Handel, Yohannes Berhane
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.ppat.1009744

Genome-wide analyses of human noroviruses provide insights on evolutionary dynamics and evidence of coexisting viral populations evolving under recombination constraints
Cited by: 26
Author(s): Kentaro Tohma, Cara J. Lepore, M. Martínez, Juan Ignacio Degiuseppe, Pattara Khamrin, Mayuko Saito, Holger Mayta, Amy U. Amanda Nwaba, Lauren A. Ford-Siltz, Kim Y. Green, Maria E. Galeano, Mirko Zimic, Juan Andrés Stupka, Robert H. Gilman, Niwat Maneekarn, Hiroshi Ushijima, Gabriel I. Parra
Software Mentions: 5
Published: about 5 years ago

10.7554/eLife.14997

Hipposeq: a comprehensive RNA-seq database of gene expression in hippocampal principal neurons
Cited by: 326
Author(s): Mark S. Cembrowski, Lihua Wang, Ken Sugino, Brenda C. Shields, Nelson Spruston
Software Mentions: 5
Published: about 10 years ago

10.7554/eLife.47605

Toxoplasma gondii infection drives conversion of NK cells into ILC1-like cells
Cited by: 79
Author(s): Eugene Park, Sanket Patel, Qiuling Wang, Prabhakar S. Andhey, Konstantin Zaitsev, Sophia Porter, Maxwell Hershey, Michael D. Bern, Béatrice Plougastel-Douglas, Patrick L. Collins, Marco Colonna, Kenneth M. Murphy, Eugene M. Oltz, Maxim N. Artyomov, L. David Sibley, Wayne M. Yokoyama
Software Mentions: 5
Published: almost 7 years ago

10.7554/eLife.42499

A combination of transcription factors mediates inducible interchromosomal contacts
Cited by: 15
Author(s): Seungsoo Kim, Maitreya J. Dunham, Jay Shendure
Software Mentions: 5
Published: about 7 years ago

10.15252/emmm.202013162

The NFIB‐ERO1A axis promotes breast cancer metastatic colonization of disseminated tumour cells
Cited by: 23
Author(s): Federica Zilli, Pedro Marques Ramos, Priska Auf der Maur, Charly Jehanno, Atul Sethi, Marie–May Coissieux, Tobias Eichlisberger, Loïc Sauteur, Adelin Rouchon, Laura Bonapace, Joana Couto, Roland Rad, Michael Rugaard Jensen, Andrea Banfi, Michael Stadler, Mohamed Bentires‐Alj
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-021-01001-4

The bacterial communities of Alaskan mosses and their contributions to N2-fixation
Cited by: 26
Author(s): Hannah Holland‐Moritz, Julia Stuart, Lily R. Lewis, Samantha N. Miller, Michelle C. Mack, José Miguel Ponciano, Stuart F. McDaniel, Noah Fierer
Software Mentions: 5
Published: over 5 years ago

10.7554/eLife.61257

Evolutionary transcriptomics implicates HAND2 in the origins of implantation and regulation of gestation length
Cited by: 30
Author(s): Mirna Marinić, Katelyn Mika, Sravanthi Chigurupati, Vincent J. Lynch
Software Mentions: 5
Published: over 5 years ago

10.1186/s40168-018-0555-8

The gut of the finch: uniqueness of the gut microbiome of the Galápagos vampire finch
Cited by: 54
Author(s): Alice Michel, Lewis M. Ward, Shana K. Goffredi, Katherine S. Dawson, Daniel T. Baldassarre, Alec Brenner, Kiyoko M. Gotanda, John E. McCormack, Sean W. Mullin, Ariel O’Neill, Gabrielle S. Tender, J. Albert C. Uy, Kristie Yu, Victoria J. Orphan, Jaime A. Chaves
Software Mentions: 5
Published: almost 8 years ago

10.7554/eLife.27159

Development of Bag-1L as a therapeutic target in androgen receptor-dependent prostate cancer
Cited by: 29
Author(s): Laura Cato, Antje Neeb, Adam Sharp, Víctor Buzón, Scott B. Ficarro, Linxiao Yang, Claudia Muhle‐Goll, Nane C. Kuznik, Ruth Riisnaes, Daniel Nava Rodrigues, Olivier Armant, Victor Gourain, Guillaume Adelmant, Emmanuel Amankwah Ntim, Thomas Westerling, David Dolling, Pasquale Rescigno, Ines Figueiredo, Friedrich Fauser, Jiansheng Wu, Jaice T. Rottenberg, L. Shatkina, Claudia Ester, Burkhard Luy, Holger Puchta, Jakob Troppmair, Nicole Jung, Stefan Bräse, Uwe Strähle, Jarrod A. Marto, G. Ulrich Nienhaus, Bissan Al‐Lazikani, Xavier Salvatella, Johann S. de Bono, Andrew C. B. Cato, Myles Brown
Software Mentions: 5
Published: almost 9 years ago

10.7554/eLife.43627

Flura-seq identifies organ-specific metabolic adaptations during early metastatic colonization
Cited by: 42
Author(s): Harihar Basnet, Lin Tian, Karuna Ganesh, Yun-Han Huang, Danilo G. Macalinao, Edi Brogi, Lydia W.S. Finley, Joan Massagué
Software Mentions: 5
Published: over 7 years ago

10.7150/thno.53229

Neoantigen landscape in metastatic nasopharyngeal carcinoma
Cited by: 13
Author(s): Lin Mei, Xiaolong Zhang, Rui You, Qi Yang, Xiong Zou, Kai Yu, You‐Ping Liu, Ruhai Zou, Yi-Jun Hua, Pei‐Yu Huang, Jin Wang, Qi Zhao, Xiaobing Jiang, Jun Tang, Yeunhwa Gu, Tao Yu, Guangcun He, YuLong Xie, Zhi‐Qiang Wang, Ting Liu, Siyuan Chen, Zhixiang Zuo, Ming‐Yuan Chen
Software Mentions: 5
Published: over 5 years ago

10.7554/eLife.47980

Controlling gene activation by enhancers through a drug-inducible topological insulator
Cited by: 5
Author(s): Taro Tsujimura, Osamu Takase, Masahide Yoshikawa, Etsuko Sano, Matsuhiko Hayashi, Kazuto Hoshi, Tsuyoshi Takato, Atsushi Toyoda, Hideyuki Okano, Keiichi Hishikawa
Software Mentions: 5
Published: about 6 years ago

10.7554/eLife.54508

Spen links RNA-mediated endogenous retrovirus silencing and X chromosome inactivation
Cited by: 24
Author(s): Ava C. Carter, Jin Xu, Meagan Y Nakamoto, Yuning Wei, Brian Zarnegar, Quanming Shi, James P. Broughton, Ryan C. Ransom, Ankit Salhotra, Surya Nagaraja, Rui Li, Diana R. Dou, Kathryn E. Yost, Seung Woo Cho, Anil Mistry, Michael T. Longaker, Paul A. Khavari, Robert T. Batey, Deborah S. Wuttke, Howard Y. Chang
Software Mentions: 5
Published: about 6 years ago

10.1002/ece3.5795

Climatic and vegetational drivers of insect beta diversity at the continental scale
Cited by: 10
Author(s): Douglas Chesters, Philip Beckschäfer, Michael C. Orr, Sarah J. Adamowicz, Kwok Pan Chun, Chao Zhu
Software Mentions: 5
Published: over 6 years ago

10.7554/eLife.25762

Pervasive epigenetic effects of Drosophila euchromatic transposable elements impact their evolution
Cited by: 102
Author(s): Yuh Chwen G Lee, Gary H. Karpen
Software Mentions: 5
Published: about 9 years ago

10.7554/eLife.61894

Epigenetic reprogramming rewires transcription during the alternation of generations in Arabidopsis
Cited by: 45
Author(s): Michael Borg, Ranjith Papareddy, Rodolphe Dombey, Elin Axelsson, Michael D. Nodine, David Twell, Frédéric Berger
Software Mentions: 5
Published: over 5 years ago

10.3892/or.2015.4023

Integrated analysis of DNA methylation and microRNA regulation of the lung adenocarcinoma transcriptome
Cited by: 20
Author(s): Jie Du, Lin Zhang
Software Mentions: 5
Published: about 11 years ago

10.1038/s41396-020-0606-6

Genetic variation and evolutionary history of a mycorrhizal fungus regulate the currency of exchange in symbiosis with the food security crop cassava
Cited by: 12
Author(s): Romain Savary, Cindy Dupuis, Frédéric G. Masclaux, Ivan D. Mateus, Edward C. Rojas, Ian R. Sanders
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pcbi.1000815

NeuroML: A Language for Describing Data Driven Models of Neurons and Networks with a High Degree of Biological Detail
Cited by: 284
Author(s): Padraig Gleeson, Sharon Crook, Robert C. Cannon, Michael L. Hines, Guy O Billings, Matteo Farinella, Thomas M. Morse, Andrew P. Davison, Subhasis Ray, Upinder S. Bhalla, Simon R Barnes, Yoana D Dimitrova, R. Angus Silver
Software Mentions: 5
Published: about 16 years ago

10.1093/jmcb/mjaa061

RNF219 interacts with CCR4–NOT in regulating stem cell differentiation
Cited by: 6
Author(s): Hao Du, Chen Chen, Yan Wang, Yang Yang, Zhuanzhuan Che, Xiaoxu Liu, Siyan Meng, Chenghao Guo, Manman Xu, Haitong Fang, Fengchao Wang, Chengqi Lin, Zhuojuan Luo
Software Mentions: 5
Published: over 5 years ago

10.1111/eva.12708

The genetic legacy of 50 years of desert bighorn sheep translocations
Cited by: 27
Author(s): Joshua P. Jahner, Marjorie D. Matocq, Jason L. Malaney, Mike Cox, Peregrine L. Wolff, Mitchell A. Gritts, Thomas L. Parchman
Software Mentions: 5
Published: over 7 years ago

10.1167/iovs.18-24101

Ascorbate Suppresses VEGF Expression in Retinal Pigment Epithelial Cells
Cited by: 20
Author(s): David W. Sant, Vladimir Camarena, Sushmita Mustafi, Yiwen Li, Zachary Wilkes, Derek Van Booven, Rong Wen, Gaofeng Wang
Software Mentions: 5
Published: almost 8 years ago

10.1186/s13045-020-01005-x

RNA sequencing: new technologies and applications in cancer research
Cited by: 187
Author(s): Mingye Hong, Shuangping Tao, Ling Zhang, Li-Ting Diao, Xuanmei Huang, Shaohui Huang, Shu‐Juan Xie, Zhilong Xiao, Hua Zhang
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2018.02227

Analysis of the Rumen Microbiome and Metabolome to Study the Effect of an Antimethanogenic Treatment Applied in Early Life of Kid Goats
Cited by: 19
Author(s): Leticia Abecia, Gonzalo Martínez Fernández, Kate Waddams, A. I. Martin-García, Eric Pinloche, Christopher J. Creevey, Stuart E. Denman, C. J. Newbold, D. R. Yáñez-Ruíz
Software Mentions: 5
Published: almost 8 years ago

10.1007/s10126-021-10033-8

Genomic Characterization of the Barnacle Balanus improvisus Reveals Extreme Nucleotide Diversity in Coding Regions
Cited by: 5
Author(s): Magnus Alm Rosenblad, Anna Abramova, Ulrika Lind, Pall I. Olason, Stefania Giacomello, Björn Nystedt, Anders Blomberg
Software Mentions: 5
Published: about 5 years ago

10.1186/s12935-020-01243-6

Identification of a competing endogenous RNA network associated with prognosis of pancreatic adenocarcinoma
Cited by: 24
Author(s): Wanqing Weng, Zhongjing Zhang, Weiguo Huang, Xiangxiang Xu, Boda Wu, Tingbo Ye, Yunfeng Shan, Ke–Qing Shi, Zhuo Lin
Software Mentions: 5
Published: about 6 years ago

10.3390/jof6030180

Stem Endophytic Mycobiota in Wild and Domesticated Wheat: Structural Differences and Hidden Resources for Wheat Improvement
Cited by: 17
Author(s): Xiang Sun, Evsey Kosman, Amir Sharon
Software Mentions: 5
Published: almost 6 years ago

10.3389/fmicb.2018.00922

Enrichment of Bacteria From Eastern Mediterranean Sea Involved in Lignin Degradation via the Phenylacetyl-CoA Pathway
Cited by: 20
Author(s): Hyun-Joo Woo, Terry C. Hazen
Software Mentions: 5
Published: about 8 years ago

10.7717/peerj.4292

The French press: a repeatable and high-throughput approach to exercising zebrafish (<i>Danio rerio</i>)
Cited by: 5
Author(s): Takuji Usui, Daniel W. A. Noble, Rose E. O’Dea, Melissa L. Fangmeier, Malgorzata Lagisz, Daniel Hesselson, Shinichi Nakagawa
Software Mentions: 5
Published: over 8 years ago

10.2196/13408

Translation of the eHealth Impact Questionnaire for a Population of Dutch Electronic Health Users: Validation Study
Cited by: 12
Author(s): Koen Ilja Neijenhuijs, Anja van der Hout, Evalien Veldhuijzen, Gwendolyne G M Scholten-Peeters, Cornelia F. van Uden–Kraan, Pim Cuijpers, Irma M. Verdonck‐de Leeuw
Software Mentions: 5
Published: almost 7 years ago

10.7717/peerj.7033

The influence of pharmacologically-induced affective states on attention bias in sheep
Cited by: 14
Author(s): Jessica E. Monk, Lee C, Sue Belson, Ian G. Colditz, Dennis Campbell
Software Mentions: 5
Published: about 7 years ago

10.1155/2020/8068913

Machine Learning Analysis of Image Data Based on Detailed MR Image Reports for Nasopharyngeal Carcinoma Prognosis
Cited by: 13
Author(s): Chunyan Cui, Shunxin Wang, Jian Zhou, Annan Dong, Fei Xie, Haojiang Li, Lizhi Liu
Software Mentions: 5
Published: over 6 years ago

10.1155/2020/1980921

Identification of Differentially Expressed Genes and miRNAs Associated with Esophageal Squamous Cell Carcinoma by Integrated Analysis of Microarray Data
Cited by: 4
Author(s): Lemeng Zhang, Jianhua Chen, Tianli Cheng, Hua Yang, Changqie Pan, Haitao Li
Software Mentions: 5
Published: about 6 years ago

10.1038/srep17084

Increased diversity of egg-associated bacteria on brown trout (Salmo trutta) at elevated temperatures
Cited by: 22
Author(s): Laetitia G. E. Wilkins, Aude Rogivue, Frédéric Schütz, Luca Fumagalli, Claus Wedekind
Software Mentions: 5
Published: over 10 years ago

10.1186/s12864-017-3660-3

Highly localized divergence within supergenes in Atlantic cod (Gadus morhua) within the Gulf of Maine
Cited by: 37
Author(s): Bryan T. Barney, Christiane Munkholm, David R. Walt, Stephen R. Palumbi
Software Mentions: 5
Published: over 9 years ago

10.3389/fmicb.2016.02012

16S Based Microbiome Analysis from Healthy Subjects’ Skin Swabs Stored for Different Storage Periods Reveal Phylum to Genus Level Changes
Cited by: 45
Author(s): Ingeborg Klymiuk, Isabella Bambach, V. Patra, Slave Trajanoski, Peter Wolf
Software Mentions: 5
Published: over 9 years ago

10.1073/pnas.2110758118

TET2 as a tumor suppressor and therapeutic target in T-cell acute lymphoblastic leukemia
Cited by: 22
Author(s): Maike Bensberg, Olof Rundquist, Aida Selimović, Cathrine Lagerwall, Mikael Benson, Mika Gustafsson, Hartmut Vogt, Antonio Lentini, Colm E. Nestor
Software Mentions: 5
Published: almost 5 years ago

10.3389/fgene.2018.00112

Sequence Analysis of APOA5 Among the Kuwaiti Population Identifies Association of rs2072560, rs2266788, and rs662799 With TG and VLDL Levels
Cited by: 11
Author(s): Anfal A. Jasim, Suzanne A. Al-Bustan, Wafa Y. Al-Kandari, Ahmad Al-Serri, Huda Alaskar
Software Mentions: 5
Published: over 8 years ago

10.3389/fmicb.2016.01335

Visual Comparative Omics of Fungi for Plant Biomass Deconstruction
Cited by: 31
Author(s): Shingo Miyauchi, David Navarro, Igor V. Grigoriev, Anna Lipzen, Robert Riley, Didier Chevret, Sacha Grisel, Jean‐Guy Berrin, Bernard Henrissat, Marie‐Noëlle Rosso
Software Mentions: 5
Published: almost 10 years ago

10.3389/fmicb.2016.00398

Metagenomic Analysis of Bacterial Communities of Antarctic Surface Snow
Cited by: 48
Author(s): Anna Lopatina, Sofia Medvedeva, Sergey Shmakov, Maria D. Logacheva, В. А. Крыленков, Konstantin Severinov
Software Mentions: 5
Published: over 10 years ago

10.3389/fmicb.2018.02121

Antibiotic Effects on Microbial Communities Responsible for Denitrification and N2O Production in Grassland Soils
Cited by: 48
Author(s): Miguel Semedo, Bongkeun Song, Tavis Sparrer, R. Phillips
Software Mentions: 5
Published: almost 8 years ago

10.18632/oncotarget.20405

Cancer cell line specific co-factors modulate the FOXM1 cistrome
Cited by: 8
Author(s): Yue Wang, Matthew Ung, Tian Xia, Wenqing Cheng, Chao Cheng
Software Mentions: 5
Published: almost 9 years ago

10.18632/oncotarget.13252

Prognostic and predictive values of CDK1 and MAD2L1 in lung adenocarcinoma
Cited by: 81
Author(s): Yuan-Xiang Shi, Tao Zhu, Ting Zou, Wei Zhuo, Yixin Chen, Ma-Sha Huang, Wei Zheng, Chenjing Wang, Xi Li, Xiao‐Yuan Mao, Wei Zhang, Hong‐Hao Zhou, Ji‐Ye Yin, Zhao‐Qian Liu
Software Mentions: 5
Published: over 9 years ago

10.1111/jcmm.15205

Characterization of the relationship between FLI1 and immune infiltrate level in tumour immune microenvironment for breast cancer
Cited by: 14
Author(s): Shiyuan Wang, Yakun Wang, Changhong Yu, Yiyin Cao, Yao Yu, Yi Pan, Dongqing Su, Qianzi Lu, Weihao Yang, Yongchun Zuo, Lei Yang
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-021-82136-0

A high-throughput RNA-Seq approach to elucidate the transcriptional response of Piriformospora indica to high salt stress
Cited by: 13
Author(s): Nivedita, Abdul Rawoof, Nirala Ramchiary, M. Z. Abdin
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-020-66558-w

Associations among neurophysiology measures in irritable bowel syndrome (IBS) and their relevance for IBS symptoms
Cited by: 11
Author(s): Irina Midenfjord, Annikka Polster, Henrik Sjövall, Peter Friberg, Hans Törnblom, Magnus Simrén
Software Mentions: 5
Published: about 6 years ago

10.3389/fonc.2019.01479

Integrative Transcriptomic Analysis Reveals a Multiphasic Epithelial–Mesenchymal Spectrum in Cancer and Non-tumorigenic Cells
Cited by: 24
Author(s): Nicholas Panchy, Cassandra Azeredo-Tseng, Michael Luo, Natalie Randall, Tian Hong
Software Mentions: 5
Published: over 6 years ago

10.3389/fgene.2016.00080

Recursive Indirect-Paths Modularity (RIP-M) for Detecting Community Structure in RNA-Seq Co-expression Networks
Cited by: 12
Author(s): Bahareh Rahmani, Michael T. Zimmermann, Diane E. Grill, Richard B. Kennedy, Ann L. Oberg, Bill C. White, Gregory A. Poland, Brett A. McKinney
Software Mentions: 5
Published: about 10 years ago

10.1038/srep31587

Hepatic and serum lipid signatures specific to nonalcoholic steatohepatitis in murine models
Cited by: 33
Author(s): Franck Chiappini, Christophe Desterke, Justine Bertrand‐Michel, Catherine Guettier, François Le Naour
Software Mentions: 5
Published: almost 10 years ago

10.1098/rsfs.2020.0007

Rapid, accurate, precise and reproducible ligand–protein binding free energy prediction
Cited by: 71
Author(s): Shunzhou Wan, Agastya P. Bhati, Stefan J. Zasada, Peter V. Coveney
Software Mentions: 5
Published: over 5 years ago

10.3389/fcimb.2020.588155

Proteome and Microbiome Mapping of Human Gingival Tissue in Health and Disease
Cited by: 14
Author(s): Kai Bao, Xiaofei Li, Lucy Poveda, Weihong Qi, Nathalie Selevsek, Pınar Gümüş, Gülnur Emingil, Jonas Grossmann, Patricia I. Diaz, George Hajishengallis, Nagihan Bostancı, Georgios N. Belibasakis
Software Mentions: 5
Published: almost 6 years ago

10.1002/ece3.4160

Time‐lapse cameras reveal latitude and season influence breeding phenology durations in penguins
Cited by: 7
Author(s): Caitlin Black, Ben Collen, Daniel Lunn, Dick Filby, Stephanie Winnard, Tom Hart
Software Mentions: 5
Published: almost 8 years ago

10.3389/fmicb.2019.02066

Use of RNA and DNA to Identify Mechanisms of Bacterial Community Homogenization
Cited by: 16
Author(s): Kyle Meyer, Ian A. B. Petersen, Elie Tobi, Lisa Körte, Brendan J. M. Bohannan
Software Mentions: 5
Published: almost 7 years ago

10.3390/jcm9040993

Assessing ICD-11 Gaming Disorder in Adolescent Gamers: Development and Validation of the Gaming Disorder Scale for Adolescents (GADIS-A)
Cited by: 43
Author(s): Kerstin Paschke, Maria Isabella Austermann, Rainer Thomasius
Software Mentions: 5
Published: over 6 years ago

10.1186/s12859-016-0928-6

Gene set analysis using sufficient dimension reduction
Cited by: 7
Author(s): Huey-Miin Hsueh, Tsai Chen-An
Software Mentions: 5
Published: over 10 years ago

10.7717/peerj.3712

PrePhyloPro: phylogenetic profile-based prediction of whole proteome linkages
Cited by: 15
Author(s): Yulong Niu, Chengcheng Liu, Shayan Moghimyfiroozabad, Yi Yang, Kambiz N. Alavian
Software Mentions: 5
Published: almost 9 years ago

10.1016/j.csbj.2021.07.020

MyoData: An expression knowledgebase at single cell/nucleus level for the discovery of coding-noncoding RNA functional interactions in skeletal muscle
Cited by: 3
Author(s): Davide Corso, Francesco Chemello, Enrico Alessio, Ilenia Urso, Giulia Ferrarese, Martina Bazzega, Chiara Romualdi, Gerolamo Lanfranchi, Gabriele Sales, Stefano Cagnin
Software Mentions: 5
Published: over 5 years ago

10.7717/peerj.4571

Pathways of topological rank analysis (PoTRA): a novel method to detect pathways involved in hepatocellular carcinoma
Cited by: 5
Author(s): Chaoxing Li, Li Liu, Valentin Dinu
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0235758

Development and validation of risk prediction models for multiple cardiovascular diseases and Type 2 diabetes
Cited by: 16
Author(s): Mehrdad Rezaee, Igor Putrenko, Arsia Takeh, Andrea Ganna, Erik Ingelsson
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12859-017-1673-1

NFPscanner: a webtool for knowledge-based deciphering of biomedical networks
Cited by: 0
Author(s): Wenjian Xu, Yang Cao, Ziwei Xie, Haochen He, Song He, Hong Hao, Xiaochen Bo, Fēi Li
Software Mentions: 5
Published: about 9 years ago

10.1111/pbi.13236

Molecular insight into cotton leaf curl geminivirus disease resistance in cultivated cotton ( <i>Gossypium hirsutum</i> )
Cited by: 42
Author(s): Syed Shan-e-Ali Zaidi, Rubab Zahra Naqvi, Muhammad Asif, Susan R. Strickler, Sara Shakir, Muhammad Shafiq, Ayesha Khan, Imran Amin, Bharat Mishra, M. Shahid Mukhtar, Brian E. Scheffler, Jodi A. Scheffler, Lukas A. Mueller, Shahid Mansoor
Software Mentions: 5
Published: almost 7 years ago

10.1007/s00394-016-1230-0

Cocoa polyphenols and fiber modify colonic gene expression in rats
Cited by: 14
Author(s): Malén Massot-Cladera, Àngels Franch, Margarida Castell, Francisco J. Pérez-Cano
Software Mentions: 5
Published: about 10 years ago

10.3389/fmicb.2017.02667

Low Light Availability Alters Root Exudation and Reduces Putative Beneficial Microorganisms in Seagrass Roots
Cited by: 55
Author(s): Belinda C. Martin, Deirdre Gleeson, John Statton, Andre R. Siebers, Pauline F. Grierson, Megan H. Ryan, Gary A. Kendrick
Software Mentions: 5
Published: over 8 years ago

10.3389/fmicb.2019.00993

The Water Microbiome Through a Pilot Scale Advanced Treatment Facility for Direct Potable Reuse
Cited by: 33
Author(s): Rose Kantor, Scott Miller, Kara L. Nelson
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pone.0151127

MiRComb: An R Package to Analyse miRNA-mRNA Interactions. Examples across Five Digestive Cancers
Cited by: 35
Author(s): María Vila-Casadesús, Meritxell Gironella, Juan José Lozano
Software Mentions: 5
Published: over 10 years ago

10.1186/s12889-021-10989-1

Health indicators on adolescents reveal disparity and inequality on regional and national levels
Cited by: 3
Author(s): Mengqiao Wang
Software Mentions: 5
Published: about 5 years ago

10.3389/fmolb.2021.716544

GeneTrail: A Framework for the Analysis of High-Throughput Profiles
Cited by: 1
Author(s): Nico Gerstner, Tim Kehl, Kerstin Lenhof, Lea Eckhart, Lara Schneider, Daniel Stöckel, Christina Backes, Eckart Meese, Andreas Keller, Hans‐Peter Lenhof
Software Mentions: 5
Published: almost 5 years ago

10.7717/peerj.9003

Changes in the gut microbiota during Asian particolored bat (<i>Vespertilio sinensis</i>) development
Cited by: 8
Author(s): Zongsheng Yin, Keping Sun, Aoqiang Li, Deyi Sun, Zhongle Li, Guohong Xiao, Feng Jiang
Software Mentions: 5
Published: about 6 years ago

10.1186/s12879-018-3127-4

“Tuberculosis in advanced HIV infection is associated with increased expression of IFNγ and its downstream targets”
Cited by: 18
Author(s): Sheetal Verma, Peicheng Du, Damalie Nakanjako, Sabine Hermans, Jessica Briggs, Lydia Nakiyingi, Jerrold J. Ellner, Yukari C. Manabe, Padmini Salgame
Software Mentions: 5
Published: about 8 years ago

10.3389/fmicb.2021.616828

Soil Texture, Sampling Depth and Root Hairs Shape the Structure of ACC Deaminase Bacterial Community Composition in Maize Rhizosphere
Cited by: 19
Author(s): Lucie Gebauer, Marie-Lara Bouffaud, Minh Ganther, Bunlong Yim, Doris Vetterlein, Kornelia Smalla, François Buscot, Anna Heintz‐Buschart, Mika Tarkka
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2020.00749

Tree Root Zone Microbiome: Exploring the Magnitude of Environmental Conditions and Host Tree Impact
Cited by: 16
Author(s): Jean de Dieu Habiyaremye, Kezia Goldmann, Thomas Reitz, Sylvie Herrmann, François Buscot
Software Mentions: 5
Published: about 6 years ago

10.1128/mSphere.00511-17

Adaptation in a Fibronectin Binding Autolysin of Staphylococcus saprophyticus
Cited by: 9
Author(s): Tatum D Mortimer, Douglas S. Annis, Mary O’Neill, Lindsey L. Bohr, Tracy M. Smith, Hendrik N. Poinar, Deane F. Mosher, Caitlin S. Pepperell
Software Mentions: 5
Published: over 8 years ago

10.1186/s13059-016-0930-3

Beyond comparisons of means: understanding changes in gene expression at the single-cell level
Cited by: 89
Author(s): Catalina A. Vallejos, Sylvia Richardson, John C. Marioni
Software Mentions: 5
Published: about 10 years ago

10.1126/sciimmunol.abc3582

TMPRSS2 and TMPRSS4 promote SARS-CoV-2 infection of human small intestinal enterocytes
Cited by: 754
Author(s): Ruochen Zang, María Florencia Gómez Castro, Broc T. McCune, Qiru Zeng, Paul W. Rothlauf, Naomi Sonnek, Zhuoming Liu, Kevin Brulois, Xin Wang, Harry B. Greenberg, Michael S. Diamond, Matthew A. Ciorba, Sean P. J. Whelan, Siyuan Ding
Software Mentions: 5
Published: about 6 years ago

10.1128/mSystems.00132-17

Direct PCR Offers a Fast and Reliable Alternative to Conventional DNA Isolation Methods for Gut Microbiomes
Cited by: 18
Author(s): Elin Videvall, Maria Strandh, Anel Engelbrecht, S.W.P. Cloete, Charlie K. Cornwallis
Software Mentions: 5
Published: over 8 years ago

10.1098/rsos.191459

Predicting maths anxiety from mathematical achievement across the transition from primary to secondary education
Cited by: 16
Author(s): Andy P. Field, Danielle Evans, Tomasz Bloniewski, Yulia Kovas
Software Mentions: 5
Published: over 6 years ago

10.3390/cells8040343

The Petunia CHANEL Gene is a ZEITLUPE Ortholog Coordinating Growth and Scent Profiles
Cited by: 18
Author(s): Marta I. Terry, Fernando Pérez-Sánz, María Victoria Díaz-Galián, Felipe Pérez de los Cobos, Pedro J. Navarro, Marcos Egea‐Cortines, Julia Weiß
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0136830

Methodological Aspects of the Potential Use of Dendrochronological Techniques When Analyzing the Long-Term Impact of Tourism on Protected Areas
Cited by: 4
Author(s): Szymon Ciapała, Paweł Adamski
Software Mentions: 5
Published: almost 11 years ago

10.3389/fonc.2021.700062

Identification of a Hypoxia-Related Molecular Classification and Hypoxic Tumor Microenvironment Signature for Predicting the Prognosis of Patients with Triple-Negative Breast Cancer
Cited by: 16
Author(s): Xiaoli Sun, Huan Luo, Chen Han, Yu Zhang, Cunli Yan
Software Mentions: 5
Published: almost 5 years ago

10.3389/fmicb.2020.00706

Mitochondrial Genome Polymorphisms in the Human Pathogenic Fungus Cryptococcus neoformans
Cited by: 21
Author(s): Yue Wang, Jianping Xu
Software Mentions: 5
Published: about 6 years ago

10.1186/s40168-021-01123-9

The metabolic footprint of Clostridia and Erysipelotrichia reveals their role in depleting sugar alcohols in the cecum
Cited by: 13
Author(s): Connor R. Tiffany, Jee Yon Lee, Alisdair Rogers, Erin E. Olsan, Pavel Morales, Franziska Faber, Andreas J. Bäumler
Software Mentions: 5
Published: almost 5 years ago