Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1523/JNEUROSCI.1634-20.2020

https://doi.org/10.1523/JNEUROSCI.1634-20.2020

Cell Type-Specific Oxidative Stress Genomic Signatures in the Globus Pallidus of Dopamine-Depleted Mice

Cited by: 12
Author(s): Alyssa J. Lawler, Ashley R. Brown, Rachel S. Bouchard, Noelle Toong, Yeonju Kim, Nitinram Velraj, Grant A Fox, Michael Kleyman, Byungsoo Kang, Aryn H. Gittis, Andreas Pfenning
Published: almost 4 years ago

Software Mentions 5

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: DropletUtils
Utilities for Handling Single-Cell Droplet Data
Papers that mentioned: 14
cran: circlize
Circular Visualization
Papers that mentioned: 260
cran: JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices
Papers that mentioned: 1,283
pypi: scanpy
Single-Cell Analysis in Python.
Papers that mentioned: 68