10.3389/fpls.2021.681145

The Associated With Carbon Conversion Rate and Source–Sink Enzyme Activity in Tomato Fruit Subjected to Water Stress and Potassium Application
Cited by: 10
Author(s): Anrong Luo, Chenni Zhou, Jinliang Chen
Software Mentions: 5
Published: about 5 years ago

10.1002/ece3.7746

Black Scoter habitat use along the southeastern coast of the United States
Cited by: 0
Author(s): Hannah M. Plumpton, Emily Silverman, Beth E. Ross
Software Mentions: 5
Published: almost 5 years ago

10.1590/0074-02760180598

Novel molecular evidence of population structure in Anopheles (Kerteszia) bellator from Brazilian Atlantic Forest
Cited by: 1
Author(s): Kamila Voges, Marcela Possato Correa da Rosa, Betina Westphal-Ferreira, Mário Antônio Navarro-Silva, Carime Lessa Mansur Pontes, André Nóbrega Pitaluga, Carlos José de Carvalho-Pinto, Luísa D P Rona
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-020-59808-4

Meta-analysis of honey bee neurogenomic response links Deformed wing virus type A to precocious behavioral maturation
Cited by: 29
Author(s): Ian M. Traniello, Syed Bukhari, Jessica L. Kevill, Amy Cash Ahmed, Adam R. Hamilton, Nicholas L. Naeger, Declan C. Schroeder, Gene E. Robinson
Software Mentions: 5
Published: over 6 years ago

10.1186/s12862-019-1570-5

Adaptive divergence in shell morphology in an ongoing gastropod radiation from Lake Malawi
Cited by: 6
Author(s): Bert Van Bocxlaer, Claudia M Ortiz-Sepulveda, Pieter Gurdebeke, Xavier Vekemans
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-020-68891-6

Structure and co-occurrence patterns of bacterial communities associated with white faeces disease outbreaks in Pacific white-leg shrimp Penaeus vannamei aquaculture
Cited by: 27
Author(s): Yustian Rovi Alfiansah, Sonja Peters, Jens Harder, Christiane Hassenrück, Astrid Gärdes
Software Mentions: 5
Published: almost 6 years ago

10.1186/1471-2105-10-S10-S5

KA-SB: from data integration to large scale reasoning
Cited by: 3
Author(s): María del Mar Roldán‐García, Ismael Navas‐Delgado, Amine Kerzazi, Othmane Chniber, Joaquin J. Molina-Castro, José F. Aldana‐Montes
Software Mentions: 5
Published: almost 17 years ago

10.1371/journal.pgen.1005693

Trim33 Binds and Silences a Class of Young Endogenous Retroviruses in the Mouse Testis; a Novel Component of the Arms Race between Retrotransposons and the Host Genome
Cited by: 24
Author(s): Luke Isbel, Richa Srivastava, Harald Oey, Alex Spurling, Lucia Daxinger, Hamsa Puthalakath, Emma Whitelaw
Software Mentions: 5
Published: over 10 years ago

10.3389/fmicb.2020.00308

Characterization of the Gut Microbiota of the Antarctic Heart Urchin (Spatangoida) Abatus agassizii
Cited by: 13
Author(s): Guillaume Schwob, Léa Cabrol, Élie Poulin, Julieta Orlando
Software Mentions: 5
Published: over 6 years ago

10.7717/peerj.4327

Evidence for widespread dysregulation of circadian clock progression in human cancer
Cited by: 66
Author(s): Jarrod Shilts, Guanhua Chen, Jacob J. Hughey
Software Mentions: 5
Published: over 8 years ago

10.1186/s12983-016-0178-5

Development of foraging skills in two orangutan populations: needing to learn or needing to grow?
Cited by: 36
Author(s): Caroline Schuppli, Sofia Forss, Ellen Meulman, Nicole Zweifel, Kevin C. Lee, Evasari Rukmana, Erin R. Vogel, Maria A. van Noordwijk, Carel P. van Schaik
Software Mentions: 5
Published: almost 10 years ago

10.1093/molbev/msab081

A Comprehensive Phylogenetic Analysis of the Serpin Superfamily
Cited by: 32
Author(s): Matthew A. Spence, Matthew D. Mortimer, Ashley M. Buckle, Bùi Quang Minh, C.J. Jackson
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0037818

Bacterial Communities in Women with Bacterial Vaginosis: High Resolution Phylogenetic Analyses Reveal Relationships of Microbiota to Clinical Criteria
Cited by: 511
Author(s): Sujatha Srinivasan, Noah G. Hoffman, Martin Morgan, F. A. Matsen, Tina L. Fiedler, Richard Hall, Frederick J. Ross, Connor O. McCoy, Roger E. Bumgarner, Jeanne M. Marrazzo, David N. Fredricks
Software Mentions: 5
Published: about 14 years ago

10.1038/s41598-019-57218-9

Immune gene signatures for predicting durable clinical benefit of anti-PD-1 immunotherapy in patients with non-small cell lung cancer
Cited by: 109
Author(s): Sohyun Hwang, Ah-Young Kwon, Jooyeon Jeong, Sewha Kim, Haeyoun Kang, Joon-Suk Park, Joo-Hang Kim, Ok Jin Han, Sun Min Lim, Hee Jung An
Software Mentions: 5
Published: over 6 years ago

10.7150/jca.51812

Identification of an apoptosis-related prognostic gene signature and molecular subtypes of clear cell renal cell carcinoma (ccRCC)
Cited by: 3
Author(s): Weimin Zhong, Fengling Zhang, Chaoqun Huang, Yao Lin, Jian Huang
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0245324

InsectOR—Webserver for sensitive identification of insect olfactory receptor genes from non-model genomes
Cited by: 10
Author(s): Snehal D. Karpe, Vikas Tiwari, R. Sowdhamini
Software Mentions: 5
Published: over 5 years ago

10.1038/s41598-021-90654-0

Kernel weighted least square approach for imputing missing values of metabolomics data
Cited by: 7
Author(s): Nishith Kumar, Md. Rakibul Hoque, Masahiro Sugimoto
Software Mentions: 5
Published: about 5 years ago

10.1111/jcmm.15517

Carboxypeptidase A6 was identified and validated as a novel potential biomarker for predicting the occurrence of active ulcerative colitis
Cited by: 3
Author(s): Haizhou Wang, Meng Zhang, Mengna Zhang, Fan Wang, Jing Liu, Qiu Zhao
Software Mentions: 5
Published: about 6 years ago

10.1038/s41598-017-06355-0

Use of Microarray Datasets to generate Caco-2-dedicated Networks and to identify Reporter Genes of Specific Pathway Activity
Cited by: 5
Author(s): Prashanna Balaji Venkatasubramanian, Gamze Toydemir, Nicole de Wit, Edoardo Saccenti, Vítor A. P. Martins dos Santos, Peter van Baarlen, Jerry M. Wells, María Suárez-Diez, Jurriaan J. Mes
Software Mentions: 5
Published: almost 9 years ago

10.1038/s41598-021-81359-5

Aldehyde-specific responses of olfactory sensory neurons in the praying mantis
Cited by: 3
Author(s): Kota Ezaki, Takashi Yamashita, Thomas Carle, Hidehiro Watanabe, Fumio Yokohari, Yoshifumi Yamawaki
Software Mentions: 5
Published: over 5 years ago

10.1038/s41419-021-03936-w

Valproic acid stimulates myogenesis in pluripotent stem cell-derived mesodermal progenitors in a NOTCH-dependent manner
Cited by: 9
Author(s): Natacha Breuls, Nefele Giarratana, Laura Yedigaryan, Gabriel Miró Garrido, Paolo Carai, Stéphane Heymans, Adrian Ranga, Christophe M. Deroose, Maurilio Sampaolesi
Software Mentions: 5
Published: about 5 years ago

10.1186/s13073-021-00863-5

Microglial PGC-1α protects against ischemic brain injury by suppressing neuroinflammation
Cited by: 69
Author(s): Bin Han, Wei Jiang, Pan Cui, Kai Zheng, Chun Dang, Junjie Wang, He Li, Lin Chen, Rongxin Zhang, Qing Mei Wang, Zhenyu Ju, Junwei Hao
Software Mentions: 5
Published: over 5 years ago

10.3389/fgene.2021.612670

Non-linear Normalization for Non-UMI Single Cell RNA-Seq
Cited by: 3
Author(s): Zhijin Wu, Kenong Su, Hao Wu
Software Mentions: 5
Published: over 5 years ago

10.3389/fgene.2019.00958

Single-Cell Analysis of Circulating Tumor Cells: How Far Have We Come in the -Omics Era?
Cited by: 52
Author(s): Elisabetta Rossi, Rita Zamarchi
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0252862

Approaches to measure class importance in Knowledge Graphs
Cited by: 2
Author(s): Daniel Fernández-Álvarez, Johannes Frey, José Emilio Labra Gayo, Daniel Gayo-Avello, Sebastian Hellmann
Software Mentions: 5
Published: about 5 years ago

10.3389/fnins.2021.620899

Integrated miRNA-Seq and mRNA-Seq Study to Identify miRNAs Associated With Alzheimer’s Disease Using Post-mortem Brain Tissue Samples
Cited by: 21
Author(s): Qingqin Li, Diana Cai
Software Mentions: 5
Published: over 5 years ago

10.1186/1471-2164-11-32

Integrative analysis of the heat shock response in Aspergillus fumigatus
Cited by: 76
Author(s): Daniela Albrecht, Reinhard Guthke, Axel A. Brakhage, Olaf Kniemeyer
Software Mentions: 5
Published: over 16 years ago

10.1186/1471-2105-8-179

Genome Expression Pathway Analysis Tool – Analysis and visualization of microarray gene expression data under genomic, proteomic and metabolic context
Cited by: 23
Author(s): Markus Weniger, Julia C. Engelmann, Jörg Schultz
Software Mentions: 5
Published: about 19 years ago

10.1186/s40635-021-00398-4

Pulmonary and intestinal microbiota dynamics during Gram-negative pneumonia-derived sepsis
Cited by: 8
Author(s): Nora S. Wolff, Max C. Jacobs, W. Joost Wiersinga, Floor Hugenholtz
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0245710

Isolation of the Buchnera aphidicola flagellum basal body complexes from the Buchnera membrane
Cited by: 1
Author(s): Matthew J. Schepers, James N. Yelland, Nancy A. Moran, David W. Taylor
Software Mentions: 5
Published: about 5 years ago

10.1093/bib/bbaa150

Recent advances in user-friendly computational tools to engineer protein function
Cited by: 30
Author(s): Carlos Sequeiros-Borja, Bartłomiej Surpeta, Jan Brezovský
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12864-017-4007-9

Equine skeletal muscle adaptations to exercise and training: evidence of differential regulation of autophagosomal and mitochondrial components
Cited by: 28
Author(s): Kenneth Bryan, Beatrice A. McGivney, Gabriella Farries, Paul A. McGettigan, C. L. McGivney, K. F. Gough, David E. MacHugh, Lisa Katz, Emmeline W. Hill
Software Mentions: 5
Published: almost 9 years ago

10.1186/s12915-021-01139-5

The genome of the zoonotic malaria parasite Plasmodium simium reveals adaptations to host switching
Cited by: 21
Author(s): Tobias Mourier, Denise Anete Madureira de Alvarenga, Abhinav Kaushik, Anielle de Pina-Costa, Olga Douvropoulou, Qingtian Guan, Francisco J. Guzmán‐Vega, Sarah Forrester, Filipe Vieira Santos de Abreu, Cesare Bianco Júnior, Júlio César de Souza, Sílvia Bahadian Moreira, Zelinda Maria Braga Hirano, Alcides Pissinatti, Maria de Fátima Ferreira-da-Cruz, Ricardo Lourenço de Oliveira, Stefan T. Arold, Daniel C. Jeffares, Patrícia Brasil, Cristiana Ferreira Alves de Brito, Richard Culleton, Cláudio Tadeu Daniel-Ribeiro, Arnab Pain
Software Mentions: 5
Published: almost 5 years ago

10.1186/1471-2164-14-293

A data-driven approach to preprocessing Illumina 450K methylation array data
Cited by: 805
Author(s): Ruth Pidsley, Chloe Wong, Manuela Volta, Katie Lunnon, Jonathan Mill, Leonard C. Schalkwyk
Software Mentions: 5
Published: about 13 years ago

10.7554/eLife.53600

MEIS-mediated suppression of human prostate cancer growth and metastasis through HOXB13-dependent regulation of proteoglycans
Cited by: 30
Author(s): Calvin VanOpstall, Padma Srikanth, Hannah Brechka, Marc Gillard, Sophia Lamperis, Baizhen Zhu, Roger Brown, Raj Bhanvadia, Donald Vander Griend
Software Mentions: 5
Published: about 6 years ago

10.3389/fgene.2021.607817

Multi-Omics Data Fusion for Cancer Molecular Subtyping Using Sparse Canonical Correlation Analysis
Cited by: 8
Author(s): Qi Lin, Wei Wang, Tan Wu, Lina Zhu, Lingli He, Xin Wang
Software Mentions: 5
Published: almost 5 years ago

10.3390/ijms221910297

Circular RNAs Repertoire and Expression Profile during Brassica rapa Pollen Development
Cited by: 10
Author(s): Saeid Babaei, Mohan B. Singh, Prem L. Bhalla
Software Mentions: 5
Published: almost 5 years ago

10.3390/v11030299

Metagenomes of a Freshwater Charavirus from British Columbia Provide a Window into Ancient Lineages of Viruses
Cited by: 19
Author(s): Marli Vlok, Adrian Gibbs, Curtis A. Suttle
Software Mentions: 5
Published: over 7 years ago

10.3389/fpls.2021.698640

High-Resolution X-Ray Computed Tomography: A New Workflow for the Analysis of Xylogenesis and Intra-Seasonal Wood Biomass Production
Cited by: 8
Author(s): Romain Lehnebach, Matteo Campioli, Jožica Gričar, Peter Prislan, Bertold Mariën, Hans Beeckman, Jan Van den Bulcke
Software Mentions: 5
Published: almost 5 years ago

10.1186/s12885-021-07928-z

Integrated bioinformatic analysis identifies UBE2Q1 as a potential prognostic marker for high grade serous ovarian cancer
Cited by: 8
Author(s): Rachel Topno, I.K. Singh, Manoj Kumar, Pallavi Agarwal
Software Mentions: 5
Published: over 5 years ago

10.1186/s12967-021-02716-6

The potential role of chemotaxis and the complement system in the formation and progression of thoracic aortic aneurysms inferred from the weighted gene coexpression network analysis
Cited by: 5
Author(s): Chuxiang Lei, Dan Yang, Wenlin Chen, Haoxuan Kan, Feifei Xu, Hui Zhang, Wei Wang, Lei Ji, Yuehong Zheng
Software Mentions: 5
Published: over 5 years ago

10.1186/1471-2229-12-106

Genome-wide analysis of the MYB transcription factor superfamily in soybean
Cited by: 320
Author(s): Hongwu Du, Sisi Yang, Zhe Liang, Bo-Run Feng, Lei Liu, Yubi Huang, Yixiong Tang
Software Mentions: 5
Published: about 14 years ago

10.1155/2020/7082408

Identification and Validation of an Individualized EMT-Related Prognostic Risk Score Formula in Gastric Adenocarcinoma Patients
Cited by: 13
Author(s): Deyu Zhang, Siran Zhou, Bing-Rong Liu
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0211075

Development of a risk prediction model (Hangang) and comparison with clinical severity scores in burn patients
Cited by: 9
Author(s): Young‐Min Kim, Dohern Kym, Jun Hur, Jinwoo Jeon, Jaechul Yoon, Haejun Yim, Yong Suk Cho, Wook Chun
Software Mentions: 5
Published: over 7 years ago

10.1172/jci.insight.143626

Molecular mapping of interstitial lung disease reveals a phenotypically distinct senescent basal epithelial cell population
Cited by: 34
Author(s): Daryle J. DePianto, Jason A. Vander Heiden, Katrina B. Morshead, Kan Sun, Zora Modrušan, Grace Teng, Paul J. Wolters, Joseph R. Arron
Software Mentions: 5
Published: about 5 years ago

10.1155/2010/896718

Feature Detection Techniques for Preprocessing Proteomic Data
Cited by: 4
Author(s): Kimberly F. Sellers, Jeffrey C. Miecznikowski
Software Mentions: 5
Published: over 16 years ago

10.1186/s12967-019-1880-9

Timing gone awry: distinct tumour suppressive and oncogenic roles of the circadian clock and crosstalk with hypoxia signalling in diverse malignancies
Cited by: 28
Author(s): Wai Hoong Chang, Alvina G. Lai
Software Mentions: 5
Published: about 7 years ago

10.3389/fonc.2021.683951

The Epithelial to Mesenchymal Transition Related Gene Calumenin Is an Adverse Prognostic Factor of Bladder Cancer Correlated With Tumor Microenvironment Remodeling, Gene Mutation, and Ferroptosis
Cited by: 14
Author(s): Yueyao Du, WenHao Miao, Xiang Jiang, Jin Cao, Bo Wang, Yi Wang, Jian Yu, XiZhi Wang, Haitao Liu
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0100366

Predator-Prey Interactions between Shell-Boring Beetle Larvae and Rock-Dwelling Land Snails
Cited by: 22
Author(s): Els Baalbergen, Renate A. Helwerda, Rense Schelfhorst, Ruth F. Castillo Cajas, Coline H.M. van Moorsel, Robin Kundrata, Francisco Welter-Schultes, Sinos Giokas, Menno Schilthuizen
Software Mentions: 5
Published: about 12 years ago

10.1111/1755-0998.12694

An integrated framework to identify wildlife populations under threat from climate change
Cited by: 64
Author(s): Orly Razgour, John B. Taggart, Stéphanie Manel, Javier Juste, Carlos Ibáñez, Hugo Rebelo, Antton Alberdi, Gareth Jones, Kirsty Park
Software Mentions: 5
Published: almost 9 years ago

10.1002/ece3.4655

Variation in three community features across habitat types and scales within a 15-ha subtropical evergreen-deciduous broadleaved mixed forest dynamics plot in China
Cited by: 1
Author(s): Feng Guo, Junqing Li, Runguo Zang, Xunru Ai, Lan Yao
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0091828

Characterization of Changes in Gene Expression and Biochemical Pathways at Low Levels of Benzene Exposure
Cited by: 36
Author(s): Reuben Thomas, Alan Hubbard, Cliona M. McHale, Luoping Zhang, Stephen M. Rappaport, Qing Lan, Nathaniel Rothman, Roel Vermeulen, Kathryn Z. Guyton, Jennifer Jinot, Babasaheb Sonawane, Martyn T. Smith
Software Mentions: 5
Published: about 12 years ago

10.1371/journal.pone.0167570

GWRM: An R Package for Identifying Sources of Variation in Overdispersed Count Data
Cited by: 4
Author(s): Silverio Vílchez-López, A. J. Sáez-Castillo, María José Olmo-Jiménez
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0174602

Detecting disease-associated genomic outcomes using constrained mixture of Bayesian hierarchical models for paired data
Cited by: 1
Author(s): Yunfeng Li, Jarrett Morrow, Benjamin A. Raby, Kelan G. Tantisira, Scott T. Weiss, Wei Huang, Weiliang Qiu
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pone.0248224

Real-life evaluation of histologic scores for Ulcerative Colitis in remission
Cited by: 8
Author(s): Christian Børde Arkteg, Sveinung Wergeland Sørbye, Lene Riis, Stig Manfred Dalen, Jon Florholmen, Rasmus Goll
Software Mentions: 5
Published: over 5 years ago

10.7554/eLife.63324

Adipocyte NR1D1 dictates adipose tissue expansion during obesity
Cited by: 20
Author(s): Louise Hunter, Charlotte E Pelekanou, Nichola J Barron, Rebecca C Northeast, M Grudzień, Antony Adamson, Polly Downton, Thomas Cornfield, Peter Cunningham, Jean-Noël Billaud, Leanne Hodson, Andrew S. I. Loudon, Richard D. Unwin, Mudassar Iqbal, David Ray, David A. Bechtold
Software Mentions: 5
Published: almost 5 years ago

10.1038/s41598-020-67897-4

New methodology to process shifted excitation Raman difference spectroscopy data: a case study of pollen classification
Cited by: 15
Author(s): Florian Korinth, Abdullah Saif Mondol, Clara Stiebing, Iwan W. Schie, Christoph Krafft, Jürgen Popp
Software Mentions: 5
Published: about 6 years ago

10.7717/peerj-cs.232

On-demand virtual research environments using microservices
Cited by: 10
Author(s): Marco Capuccini, Anders Larsson, Matteo Carone, Jon Ander Novella, Noureddin Sadawi, Jianliang Gao, Salman Toor, Ola Spjuth
Software Mentions: 5
Published: over 6 years ago

10.1038/s41416-018-0141-7

Rare germline variants in DNA repair genes and the angiogenesis pathway predispose prostate cancer patients to develop metastatic disease
Cited by: 36
Author(s): Martina Mijušković, Ed Saunders, Daniel Leongamornlert, Sarah Wakerell, Ian Whitmore, Tokhir Dadaev, Clara Cieza-Borrella, Koveela Govindasami, Mark N. Brook, Christopher A. Haiman, David V. Conti, Rosalind Eeles, Zsofia Kote‐Jarai
Software Mentions: 5
Published: about 8 years ago

10.1016/j.gpb.2018.07.006

SeqSQC: A Bioconductor Package for Evaluating the Sample Quality of Next-generation Sequencing Data
Cited by: 6
Author(s): Qian Liu, Qiang Hu, Song Yao, Marilyn L. Kwan, Janise M. Roh, Hua Zhao, Christine B. Ambrosone, Lawrence H. Kushi, Song Liu, Qianqian Zhu
Software Mentions: 5
Published: over 7 years ago

10.1038/s41419-021-03450-z

ECT2 overexpression promotes the polarization of tumor-associated macrophages in hepatocellular carcinoma via the ECT2/PLK1/PTEN pathway
Cited by: 26
Author(s): Dafeng Xu, Yu Wang, Junzhen Wu, Zhensheng Zhang, Jiacheng Chen, Mingwei Xie, Rong Tang, Cheng Chen, Liang Chen, Shaomin Lin, Xiangxiang Luo, Jinfang Zheng
Software Mentions: 5
Published: over 5 years ago

10.1186/s13148-018-0580-2

Genome-wide DNA methylation profiling shows a distinct epigenetic signature associated with lung macrophages in cystic fibrosis
Cited by: 26
Author(s): Youdinghuan Chen, David A. Armstrong, Lucas A. Salas, Haley F. Hazlett, Amanda B. Nymon, John A. Dessaint, Daniel Aridgides, Diane Mellinger, Xiaoying Li, Brock C. Christensen, Alix Ashare
Software Mentions: 5
Published: over 7 years ago

10.18632/oncotarget.15349

Interleukin-1β levels predict long-term mortality and need for heart transplantation in ambulatory patients affected by idiopathic dilated cardiomyopathy
Cited by: 19
Author(s): Aneta Aleksova, Antonio Paolo Beltrami, Cosimo Carriere, Giulia Barbati, Pierluigi Lesizza, Martina Perrieri-Montanino, Miriam Isola, Piero Gentile, Elisabetta Salvioni, Tarcisio Not, Piergiuseppe Agostoni, Gianfranco Sinagra
Software Mentions: 5
Published: over 9 years ago

10.1264/jsme2.ME20153

Inoculation of <i>Mimosa Pudica</i> with <i>Paraburkholderia phymatum</i> Results in Changes to the Rhizoplane Microbial Community Structure
Cited by: 5
Author(s): Shashini U. Welmillage, Qian Zhang, Virinchipuram S. Sreevidya, Michael J. Sadowsky, Prasad Gyaneshwar
Software Mentions: 5
Published: over 5 years ago

10.3389/fpls.2018.01256

Comparative Transcriptomic Analysis of Two Actinorhizal Plants and the Legume Medicagotruncatula Supports the Homology of Root Nodule Symbioses and Is Congruent With a Two-Step Process of Evolution in the Nitrogen-Fixing Clade of Angiosperms
Cited by: 14
Author(s): Kai Battenberg, Daniel Potter, Christine A. Tabuloc, Joanna C. Chiu, Alison M. Berry
Software Mentions: 5
Published: almost 8 years ago

10.1093/hmg/ddv203

Multiple novel prostate cancer susceptibility signals identified by fine-mapping of known risk loci among Europeans
Cited by: 65
Author(s): Ali Amin Al Olama, Tokhir Dadaev, Dennis J. Hazelett, Qiuyan Li, Daniel Leongamornlert, Ed Saunders, Sarah H. Stephens, Clara Cieza-Borrella, Ian Whitmore, Sara Benlloch Garcia, Graham G. Giles, Melissa C. Southey, Liesel M. FitzGerald, Henrik Grönberg, Fredrik Wiklund, Markus Aly, Brian E. Henderson, Fredrick Schumacher, Christopher A. Haiman, Johanna Schleutker, Tiina Wahlfors, Teuvo L.J. Tammela, Børge G. Nordestgaard, Tim Key, Ruth C. Travis, David E. Neal, Jenny Donovan, Freddie C. Hamdy, Paul D.P. Pharoah, Nora Pashayan, Kay‐Tee Khaw, Janet L. Stanford, Stephen N. Thibodeau, Shannon K. McDonnell, Daniel J. Schaid, Christiane Maier, Walther Vogel, Manuel Luedeke, Kathleen Herkommer, Adam S. Kibel, Cezary Cybulski, Dominika Wokołorczyk, Wojciech Kluźniak, Lisa A. Cannon‐Albright, Hermann Brenner, Katja Butterbach, Volker Arndt, Jong Y. Park, Thomas A. Sellers, Hui‐Yi Lin, Chavdar Slavov, Radka Kaneva, Vanio Mitev, Jyotsna Batra, Judith A. Clements, Amanda B. Spurdle, Manuel R. Teixeira, Paula Paulo, Sofia Maia, Hardev Pandha, Agnieszka Michael, Andrzej M. Kierzek, Koveela Govindasami, Michelle Guy, Artitaya Lophatonanon, Kenneth Muir, Ana Viñuela, Andrew Anand Brown, Cogs-Cruk Gwas-Ellipse Initiative, Mathew Freedman, David V. Conti, Douglas F. Easton, Gerhard A. Coetzee, Rosalind Eeles, Zsofia Kote‐Jarai
Software Mentions: 5
Published: about 11 years ago

10.1371/journal.pgen.1005819

Strong Components of Epigenetic Memory in Cultured Human Fibroblasts Related to Site of Origin and Donor Age
Cited by: 21
Author(s): Н. А. Иванов, Ran Tao, Joshua G. Chenoweth, Anna C. Brandtjen, Michelle I. Mighdoll, John D. Genova, Ronald D.G. McKay, Yankai Jia, Daniel R. Weinberger, Joel E. Kleinman, Thomas M. Hyde, Andrew E. Jaffe
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pone.0251800

Comparison of machine-learning methodologies for accurate diagnosis of sepsis using microarray gene expression data
Cited by: 5
Author(s): Dominik Schaack, Markus A. Weigand, Florian Uhle
Software Mentions: 5
Published: about 5 years ago

10.3390/cancers12082261

MiR-302b as a Combinatorial Therapeutic Approach to Improve Cisplatin Chemotherapy Efficacy in Human Triple-Negative Breast Cancer
Cited by: 12
Author(s): Alessandra Cataldo, Sandra Romero-Córdoba, Ilaria Plantamura, Giulia Cosentino, Alfredo Hidalgo‐Miranda, Elda Tagliabue, Marilena V. Iorio
Software Mentions: 5
Published: almost 6 years ago

10.3389/fpls.2019.01373

Quantitative Trait Locus Analysis of Leaf Morphology Indicates Conserved Shape Loci in Grapevine
Cited by: 21
Author(s): Elizabeth Demmings, Brigette R. Williams, Cheng‐Ruei Lee, Paola Barba, Shanshan Yang, Chin-Feng Hwang, Bruce I. Reisch, Daniel H. Chitwood, Jason P. Londo
Software Mentions: 5
Published: over 6 years ago

10.3389/fpsyg.2018.02078

What Is the Structure of Time? A Study on Time Perspective in the United States, Poland, and Nigeria
Cited by: 7
Author(s): Małgorzata Sobol-Kwapińska, Tomasz Jankowski, Aneta Przepiórka, Ike Oinyshi, Piotr Sorokowski, Philip G. Zimbardo
Software Mentions: 5
Published: over 7 years ago

10.1186/s12983-015-0127-8

Performance of single and multi-atlas based automated landmarking methods compared to expert annotations in volumetric microCT datasets of mouse mandibles
Cited by: 13
Author(s): Ryan Young, A. Murat Maga
Software Mentions: 5
Published: over 10 years ago

10.3389/fmicb.2020.01614

Replacing Barley and Soybean Meal With By-products, in a Pasture Based Diet, Alters Daily Methane Output and the Rumen Microbial Community in vitro Using the Rumen Simulation Technique (RUSITEC)
Cited by: 7
Author(s): Pamela M. Smith, Sinéad M. Waters, David A. Kenny, T. M. Boland, J. S. Heffernan, A. K. Kelly
Software Mentions: 5
Published: almost 6 years ago

10.1016/j.stemcr.2019.04.012

Human iPSC-Derived Retinal Pigment Epithelium: A Model System for Prioritizing and Functionally Characterizing Causal Variants at AMD Risk Loci
Cited by: 31
Author(s): Erin N. Smith, Agnieszka D’Antonio‐Chronowska, William W. Greenwald, Victor Borja, Lana Ribeiro Aguiar, Robert Pogue, Hiroko Matsui, Paola Benaglio, Shyamanga Borooah, Matteo D’Antonio, Radha Ayyagari, Kelly A. Frazer
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-020-80453-4

Prognostic signature of lung adenocarcinoma based on stem cell-related genes
Cited by: 7
Author(s): Zhanghao Huang, Muqi Shi, Hao Zhou, Jinjie Wang, Haijian Zhang, Jia Hai Shi
Software Mentions: 5
Published: over 5 years ago

10.7150/jca.35785

A novel and validated nomogram to predict overall survival for gastric neuroendocrine neoplasms
Cited by: 27
Author(s): Sheng Zhang, Yi Xin Tong, Xin Hua Zhang, Yu Jie Zhang, Xiangjie Xu, Ai Tang Xiao, Teng Fei Chao, Jian Ping Gong
Software Mentions: 5
Published: over 7 years ago

10.1001/jamanetworkopen.2018.5845

Association Between Early Intravenous Fluids Provided by Paramedics and Subsequent In-Hospital Mortality Among Patients With Sepsis
Cited by: 18
Author(s): Daniel Lane, Hannah Wunsch, Refik Saskin, Sheldon Cheskes, Steve Lin, Laurie J. Morrison, Damon C. Scales
Software Mentions: 5
Published: over 7 years ago

10.3389/fvets.2019.00260

A Microbiomic Analysis of a Pasture-Raised Broiler Flock Elucidates Foodborne Pathogen Ecology Along the Farm-To-Fork Continuum
Cited by: 16
Author(s): Michael J. Rothrock, Aude Locatelli, Kristina M. Feye, Andrew J Caudill, Jean Guard, Kelli L. Hiett, Steven C. Ricke
Software Mentions: 5
Published: almost 7 years ago

10.3390/nu13020432

Is Serum BDNF Altered in Acute, Short- and Long-Term Recovered Restrictive Type Anorexia Nervosa?
Cited by: 6
Author(s): Jonas L Steinhäuser, Joseph A. King, Friederike I. Tam, Maria Seidel, Ronald Biemann, Marie‐Louis Wronski, Daniel Geisler, Veit Roessner, Stefan Ehrlich
Software Mentions: 5
Published: over 5 years ago

10.7150/thno.60031

Astrocytic YAP protects the optic nerve and retina in an experimental autoimmune encephalomyelitis model through TGF-β signaling
Cited by: 27
Author(s): Wei Qian, Xuemeng Miao, Jingjing Zhang, Ludan Xiang, Xiuchun Li, Xiaomei Bao, Siyu Du, Mianxian Wang, Shuangda Miao, Yiren Fan, Wei Wang, Xingxing Xu, Xiya Shen, Dongren Yang, Xiwu Wang, Yuanyuan Fang, Li‐Xin Hu, Xuyi Pan, Haoru Dong, Hui Wang, Ying Wang, Jia Li, Zhihui Huang
Software Mentions: 5
Published: over 5 years ago

10.3389/fpls.2018.01257

Combinations of Abiotic Factors Differentially Alter Production of Plant Secondary Metabolites in Five Woody Plant Species in the Boreal-Temperate Transition Zone
Cited by: 68
Author(s): John L. Berini, Stephen A. Brockman, Adrian D. Hegeman, Peter B. Reich, Ranjan Muthukrishnan, Rebecca Montgomery, James D. Forester
Software Mentions: 5
Published: almost 8 years ago

10.1038/s41598-019-53298-9

A pilot study of peripheral blood DNA methylation models as predictors of knee osteoarthritis radiographic progression: data from the Osteoarthritis Initiative (OAI)
Cited by: 10
Author(s): Christopher M. Dunn, Michael C. Nevitt, J.A. Lynch, Matlock A. Jeffries
Software Mentions: 5
Published: over 6 years ago

10.1016/j.celrep.2021.108735

Specification and epigenomic resetting of the pig germline exhibit conservation with the human lineage
Cited by: 38
Author(s): Qifan Zhu, Fei Sang, Sarah Withey, Walfred W.C. Tang, Sabine Dietmann, Doris Klisch, Priscila Ramos‐Ibeas, Haixin Zhang, Cristina E. Requena, Petra Hájková, Matt Loose, M. Azim Surani, Ramiro Alberio
Software Mentions: 5
Published: over 5 years ago

10.3390/toxins13080552

Bacterial Enrichment Cultures Biotransform the Mycotoxin Deoxynivalenol into a Novel Metabolite Toxic to Plant and Porcine Cells
Cited by: 4
Author(s): Ilse Vanhoutte, Caroline De Tender, Kristel Demeyere, Mohamed F. Abdallah, Sarah Ommeslag, Pieter Vermeir, Sarah De Saeger, Jane Debode, Evelyne Meyer, Siska Croubels, Kris Audenaert, Leen De Gelder
Software Mentions: 5
Published: almost 5 years ago

10.1007/s00572-019-00918-x

Evolution and networks in ancient and widespread symbioses between Mucoromycotina and liverworts
Cited by: 20
Author(s): William R. Rimington, Silvia Pressel, Jeffrey G. Duckett, Katie J. Field, Martin I. Bidartondo
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-018-25309-8

Unexpectedly rapid evolution of mandibular shape in hominins
Cited by: 14
Author(s): Pasquale Raia, Marco Boggioni, Francesco Carotenuto, Silvia Castiglione, Mirko Di Febbraro, Fabio Di Vincenzo, Marina Melchionna, Alessandro Mondanaro, Andrea Papini, Antonio Profico, Carmela Serio, Alessio Veneziano, V. A. Vero, Lorenzo Rook, Carlo Meloro, Giorgio Manzi
Software Mentions: 5
Published: about 8 years ago

10.7717/peerj.6559

Estimating probabilistic context-free grammars for proteins using contact map constraints
Cited by: 7
Author(s): Witold Dyrka, Mateusz Pyzik, F Coste, Hugo Talibart
Software Mentions: 5
Published: over 7 years ago

10.7717/peerj.4606

Can phosphorus application and cover cropping alter arbuscular mycorrhizal fungal communities and soybean performance after a five-year phosphorus-unfertilized crop rotational system?
Cited by: 21
Author(s): Masao Higo, Ryohei Sato, Ayu Serizawa, Yuichi Takahashi, Kento Gunji, Yuya Tatewaki, Katsunori Isobe
Software Mentions: 5
Published: about 8 years ago

10.3390/rs11050551

The Influence of Region of Interest Heterogeneity on Classification Accuracy in Wetland Systems
Cited by: 11
Author(s): Tedros M. Berhane, Hugo Costa, Charles R. Lane, Oleg A. Anenkhonov, Victor V. Chepinoga, Bradley C. Autrey
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.pone.0232456

Investigation of the human nasal microbiome in persons with long- and short-term exposure to methicillin-resistant Staphylococcus aureus and other bacteria from the pig farm environment
Cited by: 10
Author(s): Zohorul Islam, Thor Bech Johannesen, Berit Lilje, Tinna Ravnholt Urth, Anders Rhod Larsen, Øystein Angen, Jesper Larsen
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2018.00675

Gut Microbiota Profiling and Gut–Brain Crosstalk in Children Affected by Pediatric Acute-Onset Neuropsychiatric Syndrome and Pediatric Autoimmune Neuropsychiatric Disorders Associated With Streptococcal Infections
Cited by: 76
Author(s): Andrea Quagliariello, Federica Del Chierico, Alessandra Russo, Sofia Reddel, Giulia Conte, Loris Riccardo Lopetuso, Gianluca Ianiro, Bruno Dallapiccola, Francesco Cardona, Antonio Gasbarrini, Lorenza Putignani
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0189159

Transcriptomic profiles in peripheral blood between women with unexplained recurrent implantation failure and recurrent miscarriage and the correlation with endometrium: A pilot study
Cited by: 11
Author(s): Jin Huang, Nana Jin, Hao Qin, Xiao Shi, Yingyu Liu, Wing-Ching Cheung, Chi Chiu Wang, Ting‐Fung Chan, Tin‐Chiu Li
Software Mentions: 5
Published: over 8 years ago

10.1186/s13014-021-01810-9

Impact of feature selection methods and subgroup factors on prognostic analysis with CT-based radiomics in non-small cell lung cancer patients
Cited by: 15
Author(s): Yuto Sugai, Noriyuki Kadoya, Shohei Tanaka, Shunpei Tanabe, Mariko Umeda, Takaya Yamamoto, Kazuya Takeda, Suguru Dobashi, Haruna Ohashi, Ken Takeda, Keiichi Jingu
Software Mentions: 5
Published: about 5 years ago

10.3390/nu12082280

How Does Time Use Differ between Individuals Who Do More versus Less Foodwork? A Compositional Data Analysis of Time Use in the United Kingdom Time Use Survey 2014–2015
Cited by: 8
Author(s): Chloe Clifford Astbury, Louise Foley, Tarra L. Penney, Jean Adams
Software Mentions: 5
Published: almost 6 years ago

10.1186/s12862-016-0743-8

Adaptive patterns in the p53 protein sequence of the hypoxia- and cancer-tolerant blind mole rat Spalax
Cited by: 8
Author(s): Vered Domankevich, Yarden Opatowsky, Assaf Malik, Abraham B. Korol, Zeev Frenkel, Irena Manov, Aaron Avivi, Imad Shams
Software Mentions: 5
Published: almost 10 years ago

10.3389/fmicb.2018.01128

Sediment Depth-Dependent Spatial Variations of Bacterial Communities in Mud Deposits of the Eastern China Marginal Seas
Cited by: 23
Author(s): Yanlu Qiao, Jiwen Liu, Meixun Zhao, Xiaohua Zhang
Software Mentions: 5
Published: about 8 years ago

10.3390/nu12041081

Response of the Human Milk Microbiota to a Maternal Prebiotic Intervention Is Individual and Influenced by Maternal Age
Cited by: 10
Author(s): Marina Padilha, Asker Brejnrod, Niels Banhos Danneskiold‐Samsøe, Christian Hoffmann, Julia de Melo Iaucci, Vanessa Pereira Cabral, Douglas Xavier-Santos, Carla Romano Taddei, Karsten Kristiansen, Susana Marta Isay Saad
Software Mentions: 5
Published: about 6 years ago

10.1186/s12864-016-3254-5

Integrated metagenomic data analysis demonstrates that a loss of diversity in oral microbiota is associated with periodontitis
Cited by: 72
Author(s): Dongmei Ai, Ruocheng Huang, Ji Wen, Chao Li, Jianguo Zhu, Xia Li
Software Mentions: 5
Published: over 9 years ago

10.3389/fonc.2021.613696

The Prognostic Impact of Tumor Architecture for Upper Urinary Tract Urothelial Carcinoma: A Propensity Score-Weighted Analysis
Cited by: 5
Author(s): Huiying Liu, Yen Ta Chen, Shun‐Chen Huang, Hung‐Jen Wang, Yufang Cheng, Chih Hsiung Kang, Wei Ching Lee, Yu-Li Su, Chun‐Chieh Huang, Yeong‐Hwa Chang, Yao‐Chi Chuang, Hao Luo, Po‐Hui Chiang
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.ppat.1009097

Vaginal microbiome-hormonal contraceptive interactions associate with the mucosal proteome and HIV acquisition
Cited by: 17
Author(s): Laura Noël‐Romas, Michelle Perner, Refilwe P. Molatlhegi, Christina Farr Zuend, Amanda Mabhula, Sarah Hoger, Alana Lamont, Kenzie Birse, Alicia R. Berard, Stuart McCorrister, Garett Westmacott, Al Leslie, Vanessa Poliquin, Renee Heffron, Lyle R. McKinnon, Adam Burgener
Software Mentions: 5
Published: over 5 years ago