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Papers: 10.1371/journal.pcbi.1006731

https://doi.org/10.1371/journal.pcbi.1006731

Graph Peak Caller: Calling ChIP-seq peaks on graph-based reference genomes

Cited by: 19
Author(s): Ivar Grytten, Knut Dagestad Rand, Alexander J. Nederbragt, Geir Storvik, Ingrid K. Glad, Geir Kjetil Sandve
Published: over 7 years ago

Software Mentions 5

cran: fasta
Fast Adaptive Shrinkage/Thresholding Algorithm
Papers that mentioned: 848
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pypi: caller
Set a Python property using a function call
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pypi: fasta
The fasta python package enables you to deal with biological sequence files easily.
Papers that mentioned: 848
Very Likely Science (80)
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
Very Likely Science (100)
pypi: vg
Linear algebra for humans: a very good vector-geometry and linear-algebra toolbelt
Papers that mentioned: 34
Very Likely Science (80)