Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/1471-2164-11-571

https://doi.org/10.1186/1471-2164-11-571

Comparing de novo assemblers for 454 transcriptome data

Cited by: 240
Author(s): Sujai Kumar, Mark Blaxter
Published: about 14 years ago

Software Mentions 5

bioconductor: ACE
Absolute Copy Number Estimation from Low-coverage Whole Genome Sequencing
Papers that mentioned: 478
bioconductor: MIRA
Methylation-Based Inference of Regulatory Activity
Papers that mentioned: 856
cran: fasta
Fast Adaptive Shrinkage/Thresholding Algorithm
Papers that mentioned: 848
pypi: Assembly
Assembly is a pythonic object-oriented, mid stack, batteries included framework built on Flask, that adds structure to your Flask application, and group your routes by class.Assembly allows developers to build web applications in much the same way they would build any other object-oriented Python program.Assembly Makes Flask Great Again!
Papers that mentioned: 147
pypi: fasta
The fasta python package enables you to deal with biological sequence files easily.
Papers that mentioned: 848