Packages with Software Mentions in Scientific Papers

pypi: libusb

Python binding for the libusb C library.
Papers that mentioned: 5

Very Likely Science (65)

pypi: Spray

A simple site server with builtin Jade support
Papers that mentioned: 5

Very Likely Science (65)

pypi: pypath

Minimalistic replacement for py.path.local
Papers that mentioned: 5

Very Likely Science (65)

pypi: OAM

A wrapper for OAM
Papers that mentioned: 5

Very Likely Science (65)

cran: speaq

Tools for Nuclear Magnetic Resonance (NMR) Spectra Alignment, Peak Based Processing, Quantitative Analysis and Visualizations
Papers that mentioned: 5

Very Likely Science (85)

pypi: SimpleCV

Make Computers See with SimpleCV, the Python Framework for Machine Vision
Papers that mentioned: 5

Very Likely Science (80)

cran: xts

eXtensible Time Series
Papers that mentioned: 5

Very Likely Science (100)

pypi: ds

Simple data query language
Papers that mentioned: 5

Very Likely Science (65)

pypi: nmap

Map numbers from one range to another
Papers that mentioned: 5

Very Likely Science (65)

pypi: LW

A Group of Packages by Luis Wilbert
Papers that mentioned: 5

Very Likely Science (65)

pypi: singularity

command line tools for visualization and analysis of singularity containers.
Papers that mentioned: 5

Very Likely Science (100)

pypi: Lightning

The Deep Learning framework to train, deploy, and ship AI products Lightning fast.
Papers that mentioned: 5

Very Likely Science (100)

cran: supclust

Supervised Clustering of Predictor Variables Such as Genes
Papers that mentioned: 5

Very Likely Science (75)

pypi: nanoscope

Python library for Bruker AFMi Nanoscope files
Papers that mentioned: 5

Very Likely Science (80)

pypi: qc

QuickCheck: randomized testing made trivial.
Papers that mentioned: 5

Very Likely Science (65)

pypi: Shift

A generic template library for Python
Papers that mentioned: 5

Very Likely Science (65)

pypi: hctsa

Human-Centered TimeSeries Analysis Package
Papers that mentioned: 5

Very Likely Science (75)

pypi: pyphysio

Python library for physiological signals analysis (IBI & HRV, ECG, BVP, EDA, RESP, fNIRS, ...)
Papers that mentioned: 5

Very Likely Science (71)

pypi: libNeuroML

A Python library for working with NeuroML descriptions of neuronal models
Papers that mentioned: 5

Very Likely Science (80)

pypi: OctoPrint

The snappy web interface for your 3D printer
Papers that mentioned: 5

Very Likely Science (80)

pypi: XMind

XMind是基于Python实现，提供了对XMind思维导图进行创建、解析、更新的一站式解决方案！
Papers that mentioned: 5

Very Likely Science (65)

pypi: DSGRN

DSGRN (Dynamic Signatures Generated by Regulatory Networks)
Papers that mentioned: 5

Very Likely Science (75)

pypi: dtreeviz

A Python 3 library for sci-kit learn, XGBoost, LightGBM, Spark, and TensorFlow decision tree visualization
Papers that mentioned: 5

Very Likely Science (100)

cran: streamR

Access to Twitter Streaming API via R
Papers that mentioned: 5

Likely Science (58)

pypi: Doric

Doric is a lightweight library for implementing and extending progressive neural networks.
Papers that mentioned: 5

Very Likely Science (75)

pypi: NanoComp

Comparing runs of Oxford Nanopore sequencing data and alignments
Papers that mentioned: 5

Very Likely Science (100)

cran: TSF

Two Stage Forecasting (TSF) for Long Memory Time Series in Presence of Structural Break
Papers that mentioned: 5

Very Likely Science (85)

pypi: HiDi

High-dimensional embedding generation library
Papers that mentioned: 5

Very Likely Science (65)

cran: ssfit

Fitting of Parametric Models using Summary Statistics
Papers that mentioned: 5

Very Likely Science (85)

cran: SciViews

SciViews - Main package
Papers that mentioned: 5

Very Likely Science (75)

pypi: Plate

Internationalization Library for Python
Papers that mentioned: 5

Likely Science (40)

pypi: sequencer

The sequencer is used to execute actions in a specified order (for example power on/off clusters)
Papers that mentioned: 5

Very Likely Science (65)

pypi: MyProxy

An asynchronous and configurable proxy server implemented in Python.
Papers that mentioned: 5

Likely Science (40)

pypi: factanal

A python wrapper for the R function factanal.
Papers that mentioned: 5

Very Likely Science (65)

pypi: swallow

Swallow for data transformation
Papers that mentioned: 5

Very Likely Science (65)

cran: simex

SIMEX- And MCSIMEX-Algorithm for Measurement Error Models
Papers that mentioned: 5

Very Likely Science (85)

cran: RSelenium

R Bindings for 'Selenium WebDriver'
Papers that mentioned: 5

Very Likely Science (75)

cran: qtlDesign

Design of QTL experiments
Papers that mentioned: 5

Very Likely Science (85)

cran: MSPRT

A Modified Sequential Probability Ratio Test (MSPRT)
Papers that mentioned: 5

Very Likely Science (75)

cran: plotmo

Plot a Model's Residuals, Response, and Partial Dependence Plots
Papers that mentioned: 5

Very Likely Science (75)

bioconductor: MetID

Network-based prioritization of putative metabolite IDs
Papers that mentioned: 5

Very Likely Science (100)

cran: Rwave

Time-Frequency Analysis of 1-D Signals
Papers that mentioned: 5

Very Likely Science (93)

cran: tweedie

Evaluation of Tweedie Exponential Family Models
Papers that mentioned: 5

Very Likely Science (83)

cran: bayesvl

Visually Learning the Graphical Structure of Bayesian Networks and Performing MCMC with 'Stan'
Papers that mentioned: 5

Very Likely Science (85)

cran: MoBPS

Modular Breeding Program Simulator
Papers that mentioned: 5

Very Likely Science (75)

High-performing routines for the randomization of a bipartite graph (or a binary event matrix), undirected and directed signed graph preserving degree distribution (or marginal totals)
Papers that mentioned: 5

Very Likely Science (90)

pypi: mel

Machine Learning toolkit
Papers that mentioned: 5

Very Likely Science (75)

pypi: neo

Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats
Papers that mentioned: 5

Very Likely Science (80)

pypi: bc

A small example package
Papers that mentioned: 5

Very Likely Science (65)

pypi: bingo

Bingo is a library that creates bingo cards and game raffles
Papers that mentioned: 5

Likely Science (40)

cran: bcrm

Bayesian Continual Reassessment Method for Phase I Dose-Escalation Trials
Papers that mentioned: 5

Very Likely Science (94)

pypi: CGEA

Chemo Genomic Enrichment Analysis
Papers that mentioned: 5

Very Likely Science (75)

pypi: Mitra

Provides basic operatons of Matrix and solve system of linear equations using Matrix. It also finds eigenvalues of Square Matrix.
Papers that mentioned: 5

Very Likely Science (80)

cran: analogue

Analogue and Weighted Averaging Methods for Palaeoecology
Papers that mentioned: 5

Very Likely Science (100)

pypi: ci

Easily run common CI tasks for Python builds.
Papers that mentioned: 5

Very Likely Science (65)

pypi: fq2fa

Convert fastq to fasta sequences
Papers that mentioned: 5

Very Likely Science (65)

pypi: kaiju

Data analysis framework to log operations and interface with MongoDB.
Papers that mentioned: 5

Very Likely Science (75)

cran: udpipe

Tokenization, Parts of Speech Tagging, Lemmatization and Dependency Parsing with the 'UDPipe' 'NLP' Toolkit
Papers that mentioned: 5

Very Likely Science (90)

pypi: smooth

Pure Python framework for writing Juju charms
Papers that mentioned: 5

Very Likely Science (65)

pypi: Energize

A Python library used to extract, build, and inject code into Electrons asar files.
Papers that mentioned: 5

Very Likely Science (65)

pypi: dicom

Pure python package for DICOM medical file reading and writing
Papers that mentioned: 5

Very Likely Science (100)

pypi: TFL

Library with lots of useful stuff (says Ralf Schlatterbeck)
Papers that mentioned: 5

Very Likely Science (65)

cran: extRemes

Extreme Value Analysis
Papers that mentioned: 5

Very Likely Science (93)

cran: rtdists

Response Time Distributions
Papers that mentioned: 5

Very Likely Science (100)

pypi: echo

Callback Properties in Python
Papers that mentioned: 5

Very Likely Science (100)

pypi: Bloch

Simplify linework in polygonal geographic datasources.
Papers that mentioned: 5

Very Likely Science (65)

pypi: fasttext

fasttext Python bindings
Papers that mentioned: 5

Very Likely Science (100)

pypi: optuna

A hyperparameter optimization framework
Papers that mentioned: 5

Very Likely Science (65)

cran: proto

Prototype Object-Based Programming
Papers that mentioned: 5

Very Likely Science (83)

bioconductor: pwrEWAS

A user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS)
Papers that mentioned: 5

Very Likely Science (98)

pypi: Faker

Faker is a Python package that generates fake data for you.
Papers that mentioned: 5

Very Likely Science (100)

cran: rlist

A Toolbox for Non-Tabular Data Manipulation
Papers that mentioned: 5

Very Likely Science (75)

pypi: panel

The powerful data exploration & web app framework for Python.
Papers that mentioned: 5

Very Likely Science (100)

pypi: lsa

Local Simularity Analysis Package.
Papers that mentioned: 5

Very Likely Science (75)

pypi: permtest

Papers that mentioned: 5

Very Likely Science (65)

bioconductor: RITAN

Rapid Integration of Term Annotation and Network resources
Papers that mentioned: 5

Very Likely Science (100)

pypi: scone

Simple CONfiguration Engine
Papers that mentioned: 5

Very Likely Science (65)

pypi: gps

GPSD client
Papers that mentioned: 5

Very Likely Science (80)

cran: rriskDistributions

Fitting Distributions to Given Data or Known Quantiles
Papers that mentioned: 5

Very Likely Science (75)

cran: RRate

Estimating Replication Rate for Genome-Wide Association Studies
Papers that mentioned: 5

Very Likely Science (75)

pypi: pyparsing

pyparsing module - Classes and methods to define and execute parsing grammars
Papers that mentioned: 5

Very Likely Science (85)

cran: OTE

Optimal Trees Ensembles for Regression, Classification and Class Membership Probability Estimation
Papers that mentioned: 5

Very Likely Science (93)

bioconductor: genomeIntervals

Operations on genomic intervals
Papers that mentioned: 5

Very Likely Science (90)

cran: pan

Multiple Imputation for Multivariate Panel or Clustered Data
Papers that mentioned: 5

Very Likely Science (85)

pypi: GeoNode

Application for serving and sharing geospatial data
Papers that mentioned: 5

Very Likely Science (65)

cran: AdhereR

Adherence to Medications
Papers that mentioned: 5

Very Likely Science (75)

pypi: CUI

Papers that mentioned: 5

Unlikely Science (0)

cran: AdequacyModel

Adequacy of Probabilistic Models and General Purpose Optimization
Papers that mentioned: 5

Very Likely Science (85)

cran: BiasedUrn

Biased Urn Model Distributions
Papers that mentioned: 5

Very Likely Science (75)

pypi: rlist

A simple test for Python
Papers that mentioned: 5

Very Likely Science (65)

pypi: gal

A Federated Learning Package Based on pytorch
Papers that mentioned: 5

Very Likely Science (100)

cran: adegraphics

An S4 Lattice-Based Package for the Representation of Multivariate Data
Papers that mentioned: 5

Very Likely Science (85)

pypi: FSTA

A python lib to Speech to Actions
Papers that mentioned: 5

Very Likely Science (65)

pypi: format

Faux string interpolation for Python >2.4 && <3.6
Papers that mentioned: 5

Likely Science (40)

cran: FNN

Fast Nearest Neighbor Search Algorithms and Applications
Papers that mentioned: 5

Very Likely Science (85)

cran: rstudioapi

Safely Access the RStudio API
Papers that mentioned: 5

Very Likely Science (83)

bioconductor: SpacePAC

Identification of Mutational Clusters in 3D Protein Space via Simulation.
Papers that mentioned: 5

Very Likely Science (100)

cran: maxnet

Fitting 'Maxent' Species Distribution Models with 'glmnet'
Papers that mentioned: 5

Very Likely Science (77)

cran: BeviMed

Bayesian Evaluation of Variant Involvement in Mendelian Disease
Papers that mentioned: 5

Very Likely Science (93)

cran: stars

Spatiotemporal Arrays, Raster and Vector Data Cubes
Papers that mentioned: 5

Very Likely Science (100)