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bioconductor: GRridge
Better prediction by use of co-data: Adaptive group-regularized ridge regressionPapers that mentioned: 5
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cran: FARDEEP
Fast and Robust Deconvolution of Tumor Infiltrating Lymphocyte from Expression Profiles using Least Trimmed SquaresPapers that mentioned: 5
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cran: AdequacyModel
Adequacy of Probabilistic Models and General Purpose OptimizationPapers that mentioned: 5
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pypi: scam
Source Code Analyzing Maching is an application for the analysis of similarities between source code files. Currently with Python, Java, C, and C++ file checking capabilities.Papers that mentioned: 5
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pypi: complex
Compute complex numbers operations such as addition, substraction, multiplication , division, modulus, conjugate and angle.Papers that mentioned: 5
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cran: DAISIE
Dynamical Assembly of Islands by Speciation, Immigration and ExtinctionPapers that mentioned: 5
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bioconductor: segmentSeq
Methods for identifying small RNA loci from high-throughput sequencing dataPapers that mentioned: 5
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cran: adegraphics
An S4 Lattice-Based Package for the Representation of Multivariate DataPapers that mentioned: 5
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cran: ExPosition
Exploratory Analysis with the Singular Value DecompositionPapers that mentioned: 5
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pypi: Mitra
Provides basic operatons of Matrix and solve system of linear equations using Matrix. It also finds eigenvalues of Square Matrix.Papers that mentioned: 5
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pypi: scico
Scientific Computational Imaging COde: A Python package for scientific imaging problemsPapers that mentioned: 5
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bioconductor: rGREAT
GREAT Analysis - Functional Enrichment on Genomic RegionsPapers that mentioned: 5
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bioconductor: SpectralTAD
SpectralTAD: Hierarchical TAD detection using spectral clusteringPapers that mentioned: 5
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pypi: copula
A python library for sampling and generating new Data points by multivariate Gaussian copulas.Papers that mentioned: 5
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cran: mclogit
Multinomial Logit Models, with or without Random Effects or OverdispersionPapers that mentioned: 5
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pypi: ip
Papers that mentioned: 5
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pypi: Coalesce
simple Python library with coalesce function and "magic" empty valuePapers that mentioned: 5
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bioconductor: switchde
Switch-like differential expression across single-cell trajectoriesPapers that mentioned: 5
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bioconductor: GraphPAC
Identification of Mutational Clusters in Proteins via a Graph Theoretical Approach.Papers that mentioned: 5
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bioconductor: ChIPseqR
Identifying Protein Binding Sites in High-Throughput Sequencing DataPapers that mentioned: 5
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pypi: cooltools
Analysis tools for genomic interaction data stored in .cool formatPapers that mentioned: 5
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cran: BeviMed
Bayesian Evaluation of Variant Involvement in Mendelian DiseasePapers that mentioned: 5
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bioconductor: annmap
Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.Papers that mentioned: 5
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cran: simPH
Simulate and Plot Estimates from Cox Proportional Hazards ModelsPapers that mentioned: 5
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cran: assortnet
Calculate the Assortativity Coefficient of Weighted and Binary NetworksPapers that mentioned: 5
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cran: cccrm
Concordance Correlation Coefficient for Repeated (and Non-Repeated) MeasuresPapers that mentioned: 5
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cran: fda.usc
Functional Data Analysis and Utilities for Statistical ComputingPapers that mentioned: 5
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bioconductor: TitanCNA
Subclonal copy number and LOH prediction from whole genome sequencing of tumoursPapers that mentioned: 5
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cran: rriskDistributions
Fitting Distributions to Given Data or Known QuantilesPapers that mentioned: 5
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bioconductor: DAPAR
Tools for the Differential Analysis of Proteins Abundance with RPapers that mentioned: 5
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cran: deming
Deming, Theil-Sen, Passing-Bablock and Total Least Squares RegressionPapers that mentioned: 5
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pypi: osmnx
Download, model, analyze, and visualize street networks and other geospatial features from OpenStreetMapPapers that mentioned: 5
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pypi: linsolve
high-level tools for linearizing and solving systems of equationsPapers that mentioned: 5
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pypi: dtreeviz
A Python 3 library for sci-kit learn, XGBoost, LightGBM, Spark, and TensorFlow decision tree visualizationPapers that mentioned: 5
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pypi: singularity
command line tools for visualization and analysis of singularity containers.Papers that mentioned: 5
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