Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: SpacePAC

https://packages.ecosyste.ms/registries/bioconductor.org/packages/SpacePAC

Identification of Mutational Clusters in 3D Protein Space via Simulation.
1 version
Latest release: about 1 year ago
1 dependent package
16,306 downloads total

Papers Mentioning SpacePAC 5

10.1016/j.cels.2020.06.005
PertInInt: An Integrative, Analytical Approach to Rapidly Uncover Cancer Driver Genes with Perturbed Interactions and Functionalities
Cited by: 7
Author(s): Shilpa Nadimpalli Kobren, Bernard Chazelle, Mona Singh
Software Mentions: 5
Published: over 4 years ago
10.1186/s12859-016-0963-3
Leveraging protein quaternary structure to identify oncogenic driver mutations
Cited by: 8
Author(s): Gregory A. Ryslik, Yu‐Wei Cheng, Yorgo Modis, Hongyu Zhao
Software Mentions: 4
Published: over 8 years ago
10.1186/s13073-014-0081-7
Functional consequences of somatic mutations in cancer using protein pocket-based prioritization approach
Cited by: 31
Author(s): Huy Gia Vuong, Feixiong Cheng, Lin Chen, Zhongming Zhao
Software Mentions: 4
Published: about 10 years ago
10.1186/1471-2105-15-231
A spatial simulation approach to account for protein structure when identifying non-random somatic mutations
Cited by: 23
Author(s): Gregory A. Ryslik, Yu‐Wei Cheng, Kei Hoi Cheung, Robert Bjornson, Daniel Zelterman, Yorgo Modis, Hongyu Zhao
Software Mentions: 3
Published: over 10 years ago
10.1186/s13073-016-0393-x
3D clusters of somatic mutations in cancer reveal numerous rare mutations as functional targets
Cited by: 161
Author(s): Jianjiong Gao, Matthew T. Chang, Hannah C. Johnsen, Sizhi Paul Gao, Brooke E. Sylvester, S. Onur Sumer, Hongxin Zhang, David B. Solit, Barry S. Taylor, Nikolaus Schultz, Chris Sander
Software Mentions: 1
Published: almost 8 years ago