Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: SpacePAC
https://packages.ecosyste.ms/registries/bioconductor.org/packages/SpacePAC
Identification of Mutational Clusters in 3D Protein Space via Simulation.
1 version
Latest release: 10 months ago
1 dependent package
16,306 downloads total
Papers Mentioning SpacePAC 5
10.1016/j.cels.2020.06.005
PertInInt: An Integrative, Analytical Approach to Rapidly Uncover Cancer Driver Genes with Perturbed Interactions and FunctionalitiesCited by: 7
Author(s): Shilpa Nadimpalli Kobren, Bernard Chazelle, Mona Singh
Software Mentions: 5
Published: about 4 years ago
10.1186/s12859-016-0963-3
Leveraging protein quaternary structure to identify oncogenic driver mutationsCited by: 8
Author(s): Gregory A. Ryslik, Yu‐Wei Cheng, Yorgo Modis, Hongyu Zhao
Software Mentions: 4
Published: over 8 years ago
10.1186/s13073-014-0081-7
Functional consequences of somatic mutations in cancer using protein pocket-based prioritization approachCited by: 31
Author(s): Huy Gia Vuong, Feixiong Cheng, Lin Chen, Zhongming Zhao
Software Mentions: 4
Published: almost 10 years ago
10.1186/1471-2105-15-231
A spatial simulation approach to account for protein structure when identifying non-random somatic mutationsCited by: 23
Author(s): Gregory A. Ryslik, Yu‐Wei Cheng, Kei Hoi Cheung, Robert Bjornson, Daniel Zelterman, Yorgo Modis, Hongyu Zhao
Software Mentions: 3
Published: about 10 years ago
10.1186/s13073-016-0393-x
3D clusters of somatic mutations in cancer reveal numerous rare mutations as functional targetsCited by: 161
Author(s): Jianjiong Gao, Matthew T. Chang, Hannah C. Johnsen, Sizhi Paul Gao, Brooke E. Sylvester, S. Onur Sumer, Hongxin Zhang, David B. Solit, Barry S. Taylor, Nikolaus Schultz, Chris Sander
Software Mentions: 1
Published: over 7 years ago