Projects: bioconductor: BiRewire
https://packages.ecosyste.ms/registries/bioconductor.org/packages/BiRewire
High-performing routines for the randomization of a bipartite graph (or a binary event matrix), undirected and directed signed graph preserving degree distribution (or marginal totals)
1 version
Latest release: over 2 years ago
23,727 downloads total
Science Score: 90/100
Starting Score: 100 points
Bonuses:
Penalties:
-
-10
No science terms in description
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Very Likely Science (90)
Papers Mentioning BiRewire 5
10.1093/gigascience/giy014
Bipartite graphs in systems biology and medicine: a survey of methods and applicationsCited by: 116
Author(s): Georgios A. Pavlopoulos, Panagiota I. Kontou, Athanasia Pavlopoulou, Costas Bouyioukos, Evripides Markou, Pantelis G. Bagos
Software Mentions: 10
Published: over 8 years ago
10.7554/eLife.26726
Systematic integration of biomedical knowledge prioritizes drugs for repurposingCited by: 303
Author(s): Daniel S. Himmelstein, Antoine Lizée, Christine Hessler, Leo Brueggeman, Sabrina Chen, Dexter Hadley, Ari Green, Pouya Khankhanian, Sergio E. Baranzini
Software Mentions: 5
Published: over 8 years ago
10.1186/s12859-016-1402-1
Efficient randomization of biological networks while preserving functional characterization of individual nodesCited by: 32
Author(s): Francesco Iorio, Martí Bernardo-Faura, Andrea Gobbi, Thomas Cokelaer, Giuseppe Jurman, Julio Sáez-Rodríguez
Software Mentions: 3
Published: over 9 years ago
10.1038/s41598-020-61422-3
Edgetic perturbation signatures represent known and novel cancer biomarkersCited by: 4
Author(s): Evans Kataka, Jan Zaucha, Goar Frishman, Andreas Ruepp, Dmitrij Frishman
Software Mentions: 2
Published: about 6 years ago
10.1186/s40880-015-0050-6
A multilevel pan-cancer map links gene mutations to cancer hallmarksCited by: 21
Author(s): Theo Knijnenburg, Tycho Bismeijer, Lodewyk Wessels, Ilya Shmulevich
Software Mentions: 1
Published: over 10 years ago