Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: BiRewire
https://packages.ecosyste.ms/registries/bioconductor.org/packages/BiRewire
High-performing routines for the randomization of a bipartite graph (or a binary event matrix), undirected and directed signed graph preserving degree distribution (or marginal totals)
1 version
Latest release: about 1 year ago
23,727 downloads total
Papers Mentioning BiRewire 5
10.1093/gigascience/giy014
Bipartite graphs in systems biology and medicine: a survey of methods and applicationsCited by: 116
Author(s): Georgios A. Pavlopoulos, Panagiota I. Kontou, Athanasia Pavlopoulou, Costas Bouyioukos, Evripides Markou, Pantelis G. Bagos
Software Mentions: 10
Published: almost 7 years ago
10.7554/eLife.26726
Systematic integration of biomedical knowledge prioritizes drugs for repurposingCited by: 303
Author(s): Daniel S. Himmelstein, Antoine Lizée, Christine Hessler, Leo Brueggeman, Sabrina Chen, Dexter Hadley, Ari Green, Pouya Khankhanian, Sergio E. Baranzini
Software Mentions: 5
Published: about 7 years ago
10.1186/s12859-016-1402-1
Efficient randomization of biological networks while preserving functional characterization of individual nodesCited by: 32
Author(s): Francesco Iorio, Martí Bernardo-Faura, Andrea Gobbi, Thomas Cokelaer, Giuseppe Jurman, Julio Sáez-Rodríguez
Software Mentions: 3
Published: almost 8 years ago
10.1038/s41598-020-61422-3
Edgetic perturbation signatures represent known and novel cancer biomarkersCited by: 4
Author(s): Evans Kataka, Jan Zaucha, Goar Frishman, Andreas Ruepp, Dmitrij Frishman
Software Mentions: 2
Published: over 4 years ago
10.1186/s40880-015-0050-6
A multilevel pan-cancer map links gene mutations to cancer hallmarksCited by: 21
Author(s): Theo Knijnenburg, Tycho Bismeijer, Lodewyk Wessels, Ilya Shmulevich
Software Mentions: 1
Published: about 9 years ago