Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-016-1402-1

https://doi.org/10.1186/s12859-016-1402-1

Efficient randomization of biological networks while preserving functional characterization of individual nodes

Cited by: 32
Author(s): Francesco Iorio, Martí Bernardo-Faura, Andrea Gobbi, Thomas Cokelaer, Giuseppe Jurman, Julio Sáez-Rodríguez
Published: almost 8 years ago

Software Mentions 3

bioconductor: BioNet
Routines for the functional analysis of biological networks
Papers that mentioned: 40
bioconductor: BiRewire
High-performing routines for the randomization of a bipartite graph (or a binary event matrix), undirected and directed signed graph preserving degree distribution (or marginal totals)
Papers that mentioned: 5
bioconductor: CellNOptR
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data
Papers that mentioned: 25