pypi: stats | Projects | Ecosyste.ms: Papers

10.1098/rsos.200327

Buried treasure—marine turtles do not ‘disguise’ or ‘camouflage’ their nests but avoid them and create a decoy trail
Cited by: 1
Author(s): Thomas J. Burns, Rory R. Thomson, Rosemary A. McLaren, Jack Rawlinson, Euan M. McMillan, Hannah Davidson, Malcolm W. Kennedy
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-020-70198-5

Computational flow cytometry of planktonic populations for the evaluation of microbiological-control programs in district cooling plants
Cited by: 0
Author(s): James McElhinney, Aurélie Mawart, Ruba Alkaabi, H. S. S. Abdelsamad, Afnan Mansour, Ayesha Hasan
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0173340

Prioritising surveillance for alien organisms transported as stowaways on ships travelling to South Africa
Cited by: 19
Author(s): Katelyn T. Faulkner, Mark P. Robertson, Mathieu Rouget, John R. Wilson
Software Mentions: 6
Published: over 9 years ago

10.1371/journal.pone.0243420

Characterizing the genetic diversity of the Andean blueberry (Vaccinium floribundum Kunth.) across the Ecuadorian Highlands
Cited by: 9
Author(s): Pamela Vega-Polo, María Mercedes Cobo, Andrea Argudo, Bernardo Gutiérrez, Jennifer K. Rowntree, María de Lourdes Torres
Software Mentions: 6
Published: almost 6 years ago

10.1534/g3.120.401234

Genetic Characterization of a Wheat Association Mapping Panel Relevant to Brazilian Breeding Using a High-Density Single Nucleotide Polymorphism Array
Cited by: 8
Author(s): Greg Mellers, Jorge González Aguilera, Nick Bird, A. L. V. Bonato, Sandro Bonow, E. Caierão, Luciano Consoli, F. M. Santana, James Simmonds, Andrew Steed, G. A. M. Torres, Cristóbal Uauy, Tally I C Wright, P. L. Scheeren, P. Nicholson, James Cockram
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-019-50811-y

Pollinators enhance crop yield and shorten the growing season by modulating plant functional characteristics: A comparison of 23 canola varieties
Cited by: 21
Author(s): George C. Adamidis, Ralph V. Cartar, Andony Melathopoulos, Stephen F. Pernal, Shelley E Hoover
Software Mentions: 6
Published: about 7 years ago

10.3389/fimmu.2020.00851

Gene Expression Profiling of PDGFRA Mutant GIST Reveals Immune Signatures as a Specific Fingerprint of D842V Exon 18 Mutation
Cited by: 10
Author(s): Valentina Indio, Gloria Ravegnini, Annalisa Astolfi, Milena Urbini, Maristella Saponara, Antonio De Leo, Elisa Gruppioni, Giuseppe Tarantino, Sabrina Angelini, Andrea Pession, Maria Abbondanza Pantaleo, Margherita Nannini
Software Mentions: 6
Published: over 6 years ago

10.3389/fmicb.2016.02064

Soil Microbiome Is More Heterogeneous in Organic Than in Conventional Farming System
Cited by: 177
Author(s): Manoeli Lupatini, G.W. Korthals, Mattias de Hollander, Thierry Janssens, Eiko E. Kuramae
Software Mentions: 6
Published: almost 10 years ago

10.3390/genes10100734

Developmental and Molecular Changes Underlying the Vernalization-Induced Transition to Flowering in Aquilegia coerulea (James)
Cited by: 4
Author(s): Bharti Sharma, Timothy A. Batz, Rakesh Kaundal, Elena M. Kramer, Uriah R. Sanders, Valerie J. Mellano, Naveen Duhan, Rousselene B. Larson
Software Mentions: 6
Published: about 7 years ago

10.3389/fgene.2021.716623

Deep Sequencing of MHC-Adapted Viral Lines Reveals Complex Recombinational Exchanges With Endogenous Retroviruses Leading to High-Frequency Variants
Cited by: 1
Author(s): Earl Middlebrook, Derek L. Stark, Douglas H. Cornwall, Jason L. Kubinak, Wayne K. Potts
Software Mentions: 6
Published: about 5 years ago

10.3389/fgene.2020.615012

Genetic Background Shapes Phenotypic Response to Diet for Adiposity in the Collaborative Cross
Cited by: 7
Author(s): Phoebe Yam, Jody Albright, Melissa VerHague, Erik Gertz, Fernando Pardo-Manuel de Villena, Brian J. Bennett
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2019.00974

Identifying the Growth Modulon of Corynebacterium glutamicum
Cited by: 8
Author(s): Thorsten Haas, Michaela Graf, Alexander Nieß, Tobias Busche, Jörn Kalinowski, Bastian Blombach, Ralf Takors
Software Mentions: 6
Published: over 7 years ago

10.3389/fgene.2020.565626

A Near-Chromosome Level Genome Assembly of Anopheles stephensi
Cited by: 14
Author(s): Afiya Razia Chida, Samathmika Ravi, Suvratha Jayaprasad, Kiran Paul, Jaysmita Saha, Chinjusha Suresh, Saurabh Whadgar, Naveen Kumar, Raksha Rao K, Chaitali Ghosh, Bibha Choudhary, Suresh Subramani, Subhashini Srinivasan
Software Mentions: 6
Published: almost 6 years ago

10.3389/fgene.2021.698040

Identification of a Ferroptosis Gene Set That Mediates the Prognosis of Squamous Cell Carcinoma of the Head and Neck
Cited by: 1
Author(s): Chunyan Li, Xuemin Wang, Rujia Qin, Zhaoming Zhong, Chuanzheng Sun
Software Mentions: 6
Published: about 5 years ago

10.3389/fmicb.2018.02868

Comparison of Bacterial Diversity in Air and Water of a Major Urban Center
Cited by: 24
Author(s): M. Elias Dueker, Shaya Regina French, Gregory D. O’Mullan
Software Mentions: 6
Published: almost 8 years ago

10.1371/journal.pone.0150495

Network Analysis of Metabolite GWAS Hits: Implication of CPS1 and the Urea Cycle in Weight Maintenance
Cited by: 11
Author(s): Alice Matone, Marie Pier Scott-Boyer, Jérôme Carayol, Parastoo Fazelzadeh, Grégory Lefebvre, Armand Valsesia, Céline Charon, Jacques Vervoort, Arne Astrup, Wim H. M. Saris, Melissa J. Morine, Jörg Hager
Software Mentions: 6
Published: over 10 years ago

10.1590/1678-4685-GMB-2017-0074

Skull shape and size variation within and between mendocinus and torquatus groups in the genus Ctenomys (Rodentia: Ctenomyidae) in chromosomal polymorphism context
Cited by: 11
Author(s): Rodrigo Fornel, Pedro Cordeiro‐Estrela, Thales Renato Ochotorena de Freitas
Software Mentions: 6
Published: almost 9 years ago

10.3389/fcimb.2018.00020

Genetic Separation of Listeria monocytogenes Causing Central Nervous System Infections in Animals
Cited by: 20
Author(s): Lisandra Aguilar-Bultet, Pamela Nicholson, Lorenz Rychener, Margaux Dreyer, Bulent Gözel, Francesco C. Origgi, Anna Oevermann, Joachim Frey, Laurent Falquet
Software Mentions: 6
Published: over 8 years ago

10.1038/s41598-021-93468-2

Integrative biology defines novel biomarkers of resistance to strongylid infection in horses
Cited by: 5
Author(s): Guillaume Sallé, Cécile Canlet, Jacques Cortet, Christine Koch, Joshua Malsa, Fabrice Reigner, Mickaël Riou, Noémie Perrot, Alexandra Blanchard, Núria Mach
Software Mentions: 6
Published: over 5 years ago

10.3389/fimmu.2017.00246

Host Genetic Background Strongly Affects Pulmonary microRNA Expression before and during Influenza A Virus Infection
Cited by: 19
Author(s): Matthias Preuße, Klaus Schughart, Frank Peßler
Software Mentions: 6
Published: over 9 years ago

10.1186/s13059-019-1850-9

A benchmark of batch-effect correction methods for single-cell RNA sequencing data
Cited by: 506
Author(s): Hoa Tran, Kok Siong Ang, Marion Chevrier, Xiaomeng Zhang, Nicole Yee Shin Lee, Michelle Goh, Jinmiao Chen
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.pone.0196130

Aridity drives plant biogeographical sub regions in the Caatinga, the largest tropical dry forest and woodland block in South America
Cited by: 51
Author(s): Augusto C. Silva, Alexandre F. Souza
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pone.0226813

An investigation of transportation practices in an Ontario swine system using descriptive network analysis
Cited by: 5
Author(s): Dylan John Melmer, Terri L. O’Sullivan, Amy L. Greer, Zvonimir Poljak
Software Mentions: 6
Published: almost 7 years ago

10.1186/s12864-016-3020-8

RNA-Seq analysis of seasonal and individual variation in blood transcriptomes of healthy managed bottlenose dolphins
Cited by: 27
Author(s): Jeanine S. Morey, Marion G. Neely, Denise Lunardi, Paul E. Anderson, Lori H. Schwacke, Michelle R. Campbell, Frances M. Van Dolah
Software Mentions: 6
Published: about 10 years ago

10.1186/s13073-016-0282-3

Identification of key regulators of pancreatic cancer progression through multidimensional systems-level analysis
Cited by: 45
Author(s): Deepa Rajamani, Manoj Bhasin
Software Mentions: 6
Published: over 10 years ago

10.1186/s13073-019-0647-5

Prognostic value of B cells in cutaneous melanoma
Cited by: 73
Author(s): Sara R. Selitsky, Lisle E. Mose, Christof C. Smith, Shengjie Chai, Katherine A. Hoadley, Dirk P. Dittmer, Stergios J. Moschos, Joel S. Parker, Benjamin G. Vincent
Software Mentions: 6
Published: over 7 years ago

10.3389/fpls.2021.715309

An Affordable Image-Analysis Platform to Accelerate Stomatal Phenotyping During Microscopic Observation
Cited by: 2
Author(s): Yosuke Toda, Toshiaki Tameshige, Masakazu Tomiyama, Toshinori Kinoshita, Kentaro Shimizu
Software Mentions: 6
Published: about 5 years ago

10.1093/gigascience/giz050

Metabolic responses of rice cultivars with different tolerance to combined drought and heat stress under field conditions
Cited by: 48
Author(s): Lovely Mae F Lawas, Xia Li, Alexander Erban, Joachim Kopka, S. V. Krishna Jagadish, Ellen Zuther, Dirk K. Hincha
Software Mentions: 6
Published: over 7 years ago

10.3389/fpls.2020.544435

Respiratory CO2 Combined With a Blend of Volatiles Emitted by Endophytic Serendipita Strains Strongly Stimulate Growth of Arabidopsis Implicating Auxin and Cytokinin Signaling
Cited by: 15
Author(s): Jolien Venneman, Lore Vandermeersch, Christophe Walgraeve, Kris Audenaert, Maarten Ameye, Jan Verwaeren, Kathy Steppe, Herman Van Langenhove, Geert Haesaert, Danny Vereecke
Software Mentions: 6
Published: about 6 years ago

10.3390/ani10111985

Is Whip Use Important to Thoroughbred Racing Integrity? What Stewards’ Reports Reveal about Fairness to Punters, Jockeys and Horses
Cited by: 8
Author(s): Kirrilly Thompson, Phil McManus, Dene Stansall, Bethany Wilson, Paul D. McGreevy
Software Mentions: 6
Published: almost 6 years ago

10.1016/j.lanepe.2021.100103

Impact of the COVID-19 pandemic and associated non-pharmaceutical interventions on other notifiable infectious diseases in Germany: An analysis of national surveillance data during week 1–2016 – week 32–2020
Cited by: 86
Author(s): Alexander Ullrich, Madlen Schranz, Ute Rexroth, Osamah Hamouda, Lars Schaade, Michaela Diercke, T. Sonia Boender
Software Mentions: 6
Published: over 5 years ago

10.3389/fped.2021.645060

Altered Gut Microbiota Taxonomic Compositions of Patients With Sepsis in a Pediatric Intensive Care Unit
Cited by: 12
Author(s): Jing Liu, Mingbang Wang, Wei-Ming Chen, Jing Ma, Yi Peng, Mingzhi Zhang, Chuanqing Wang, Gangfeng Yan, Guoping Li
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2021.697198

A Pyroptosis-Related Gene Signature for Predicting Survival in Glioblastoma
Cited by: 40
Author(s): Xinyu Li, Luyu Zhang, Xueyuan Li, Xitao Yang, Lixin Su
Software Mentions: 6
Published: about 5 years ago

10.3390/ani10010113

Exploring the Use of a Qualitative Behavioural Assessment Approach to Assess Emotional State of Calves in Rodeos
Cited by: 6
Author(s): Sally Rizzuto, Di Evans, Bethany Wilson, Paul D. McGreevy
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.pone.0090898

Reduced-Gliadin Wheat Bread: An Alternative to the Gluten-Free Diet for Consumers Suffering Gluten-Related Pathologies
Cited by: 79
Author(s): Javier Gil-Humanes, Fernando Pistón, Rossana Altamirano-Fortoul, Ana Real, Isabel Comino, Carolina Sousa, Cristina M. Rosell, Francisco Barro
Software Mentions: 6
Published: over 12 years ago

10.1186/s40168-020-00822-z

Impact of phages on soil bacterial communities and nitrogen availability under different assembly scenarios
Cited by: 69
Author(s): Lucas Palma Perez Braga, Aymé Spor, Witold Kot, Marie-Christine Breuil, Lars H. Hansen, João Carlos Setúbal, Laurent Philippot
Software Mentions: 6
Published: over 6 years ago

10.7717/peerj.6597

Phylogenetic signal analysis in the basicranium of Ursidae (Carnivora, Mammalia)
Cited by: 6
Author(s): María Eugenia Arnaudo, Néstor Toledo, Leopoldo Héctor Soibelzon, Paula Bona
Software Mentions: 6
Published: over 7 years ago

10.1186/s12859-016-1083-9

flowVS: channel-specific variance stabilization in flow cytometry
Cited by: 15
Author(s): Ariful Azad, Bartek Rajwa, Alex Pothen
Software Mentions: 6
Published: about 10 years ago

10.1186/s12864-019-5453-3

Genome-wide signatures of local adaptation among seven stoneflies species along a nationwide latitudinal gradient in Japan
Cited by: 15
Author(s): Maribet Gamboa, Kozo Watanabe
Software Mentions: 6
Published: almost 8 years ago

10.3389/fonc.2021.685026

A Novel Prognostic Signature Based on Metabolism-Related Genes to Predict Survival and Guide Personalized Treatment for Head and Neck Squamous Carcinoma
Cited by: 8
Author(s): Ying Liu, Youliang Weng, Yijie Pan, Ze‐Ning Huang, Xiaochuan Chen, Wenquan Hong, Ting Lin, Lihua Wang, Wei Liu, Sufang Qiu
Software Mentions: 6
Published: over 5 years ago

10.3389/fnut.2019.00045

What's Normal? Microbiomes in Human Milk and Infant Feces Are Related to Each Other but Vary Geographically: The INSPIRE Study
Cited by: 135
Author(s): Kimberly A. Lackey, Janet E. Williams, Courtney L. Meehan, Jessica A. Zachek, Elizabeth D. Benda, William J. Price, James A. Foster, Daniel Sellen, Elizabeth Kamau-Mbuthia, Egidioh W. Kamundia, Samwel Mbugua, Sophie E. Moore, Andrew M. Prentice, Debela Gindola K, Linda J. Kvist, Gloria E. Otoo, Cristina García-Carral, Esther Jiménez, Lorena Ruíz, Juan M. Rodríguez, Rossina G. Pareja, Lars Bode, Mark A. McGuire, Michelle K. McGuire
Software Mentions: 6
Published: over 7 years ago

10.3389/fonc.2021.675545

Identification of a Ferroptosis-Related LncRNA Signature as a Novel Prognosis Model for Lung Adenocarcinoma
Cited by: 52
Author(s): Lu Lu, Leping Liu, Qiangqiang Zhao, Rong Gui, Qiancheng Zhao
Software Mentions: 6
Published: over 5 years ago

10.1186/s40462-020-00222-w

Tracking animal movements using biomarkers in tail hairs: a novel approach for animal geolocating from sulfur isoscapes
Cited by: 10
Author(s): Zabibu Kabalika, Thomas A. Morrison, Rona A. R. McGill, Linus K. Munishi, Divine Ekwem, Wilson L. Mahene, Alex Lobora, Jason Newton, Juan Manuel Morales, Daniel T. Haydon, Grant Hopcraft
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0024754

Down-Regulating γ-Gliadins in Bread Wheat Leads to Non-Specific Increases in Other Gluten Proteins and Has No Major Effect on Dough Gluten Strength
Cited by: 74
Author(s): Fernando Pistón, Javier Gil-Humanes, Marta Rodríguez-Quijano, Francisco Barro
Software Mentions: 6
Published: about 15 years ago

10.3389/fnins.2017.00363

The Role of the Interplay between Stimulus Type and Timing in Explaining BCI-Illiteracy for Visual P300-Based Brain-Computer Interfaces
Cited by: 12
Author(s): Roberta Carabalona
Software Mentions: 6
Published: over 9 years ago

10.1186/1471-2105-15-138

An R package that automatically collects and archives details for reproducible computing
Cited by: 15
Author(s): Zhifa Liu, Stanley Pounds
Software Mentions: 6
Published: over 12 years ago

10.3389/fnins.2018.00368

From ERPs to MVPA Using the Amsterdam Decoding and Modeling Toolbox (ADAM)
Cited by: 94
Author(s): Johannes J. Fahrenfort, Joram van Driel, Simon van Gaal, Christian N. L. Olivers
Software Mentions: 6
Published: over 8 years ago

10.1186/s12859-021-04339-6

Predicting chemotherapy response using a variational autoencoder approach
Cited by: 7
Author(s): Qi Wei, Stephen A. Ramsey
Software Mentions: 6
Published: about 5 years ago

10.3390/biomedicines9020206

Zoom in on Antibody Aggregates: A Potential Pitfall in the Search of Rare EV Populations
Cited by: 1
Author(s): Rikke Wehner Rasmussen, Jaco Botha, Frederik Prip, Mathilde Sanden, Mads Nielsen, Aase Handberg
Software Mentions: 6
Published: over 5 years ago

10.7717/peerj.11119

Commercial arbuscular mycorrhizal fungal inoculant failed to establish in a vineyard despite priority advantage
Cited by: 12
Author(s): Corrina Thomsen, Laura Loverock, Vasilis Kokkoris, Taylor Holland, Pat Bowen, Miranda M. Hart
Software Mentions: 6
Published: over 5 years ago

10.3389/fnins.2019.00392

Data-Driven Analysis of Age, Sex, and Tissue Effects on Gene Expression Variability in Alzheimer's Disease
Cited by: 19
Author(s): Lavida R. K. Brooks, George I. Mias
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pone.0224366

Horizontal seed dispersal by dung beetles reduced seed and seedling clumping, but did not increase short-term seedling establishment
Cited by: 12
Author(s): Lina Adonay Urrea‐Galeano, Ellen Andresen, Rosamond Coates, Francisco Mora Ardila, Alfonso Díaz Rojas, Gabriel Ramos‐Fernández
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pone.0239681

The Znt7-null mutation has sex dependent effects on the gut microbiota and goblet cell population in the mouse colon
Cited by: 3
Author(s): Mary E. Kable, Niknaz Riazati, Catherine P. Kirschke, Junli Zhao, Surapun Tepaamorndech, Liping Huang
Software Mentions: 6
Published: about 6 years ago

10.1186/s12862-020-01645-0

What makes a fang? Phylogenetic and ecological controls on tooth evolution in rear-fanged snakes
Cited by: 20
Author(s): Erin P. Westeen, Andrew M. Durso, Michael C. Gründler, Daniel L. Rabosky, Alison R. Davis Rabosky
Software Mentions: 6
Published: over 6 years ago

10.1186/s13075-020-02403-9

Association study between immune-related miRNAs and mixed connective tissue disease
Cited by: 1
Author(s): Barbara Stypińska, Aleksandra Lewandowska, Anna Felis-Giemza, Marzena Olesińska, Agnieszka Paradowska‐Gorycka
Software Mentions: 6
Published: almost 6 years ago

10.3389/fmolb.2021.636991

Identifying Dendritic Cell–Related Genes Through a Co-Expression Network to Construct a 12-Gene Risk-Scoring Model for Predicting Hepatocellular Carcinoma Prognosis
Cited by: 7
Author(s): Chao-Yuan Huang, Xiaotao Jiang, Yuancheng Huang, Lina Zhao, Peiwu Li, Fengbin Liu
Software Mentions: 6
Published: over 5 years ago

10.1186/s13062-017-0193-2

On the global CRISPR array behavior in class I systems
Cited by: 11
Author(s): Alice Toms, Rodolphe Barrangou
Software Mentions: 6
Published: about 9 years ago

10.3389/fmicb.2021.701796

L-Canavanine, a Root Exudate From Hairy Vetch (Vicia villosa) Drastically Affecting the Soil Microbial Community and Metabolite Pathways
Cited by: 7
Author(s): Hossein Mardani-Korrani, Masaru Nakayasu, Shinichi Yamazaki, Yosuke Aoki, Rumi Kaida, Takashi Motobayashi, Masaru Kobayashi, Naoko Ohkama‐Ohtsu, Yosei Oikawa, Akifumi Sugiyama, Yoshiharu Fujii
Software Mentions: 6
Published: about 5 years ago

10.18632/oncotarget.10962

Epigenetic reprogramming and aberrant expression of PRAME are associated with increased metastatic risk in Class 1 and Class 2 uveal melanomas
Cited by: 85
Author(s): Matthew G. Field, Michael A. Durante, Christina L. Decatur, Berçin Tarlan, Kristen M. Oelschlager, John F. Stone, Jeffim N. Kuznetsov, Anne M. Bowcock, Stefan Kurtenbach, J. William Harbour
Software Mentions: 6
Published: about 10 years ago

10.1093/conphys/coab071

Water deprivation compromises maternal physiology and reproductive success in a cold and wet adapted snake <i>Vipera berus</i>
Cited by: 12
Author(s): Mathias Dezetter, Jean‐François Le Galliard, Gaëtan Guiller, Michaël Guillon, Mathieu Leroux‐Coyau, Sandrine Meylan, François Brischoux, Frédéric Angelier, Olivier Lourdais
Software Mentions: 6
Published: almost 6 years ago

10.7717/peerj.9209

Estimating food resource availability in arid environments with Sentinel 2 satellite imagery
Cited by: 4
Author(s): Caterina Funghi, René H. J. Heim, Wiebke Schuett, Simon C. Griffith, Jens Oldeland
Software Mentions: 6
Published: over 6 years ago

10.2196/20185

Mental Health and Behavior of College Students During the Early Phases of the COVID-19 Pandemic: Longitudinal Smartphone and Ecological Momentary Assessment Study
Cited by: 443
Author(s): Jeremy F. Huckins, Alex W DaSilva, Weichen Wang, Elin Hedlund, Courtney Rogers, Subigya Nepal, Jialing Wu, Mikio Obuchi, Eilis I Murphy, Meghan L. Meyer, Dylan D. Wagner, Paul E. Holtzheimer, Andrew T. Campbell
Software Mentions: 6
Published: over 6 years ago

10.1186/s12885-021-08341-2

Identification of the prognostic value of ferroptosis-related gene signature in breast cancer patients
Cited by: 55
Author(s): Ding Wang, Guodong Wei, Jiangwei Ma, Shuai Cheng, Longyuan Jia, Xinyue Song, Ming Zhang, Mingyi Ju, Lin Wang, Lin Zhao, Shijie Xin
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0228130

Effect of work on body language of ranch horses in Brazil
Cited by: 9
Author(s): Pedro Henrique Esteves Trindade, Elke Hartmann, Linda J. Keeling, Pia Haubro Andersen, Guilherme de Camargo Ferraz, Mateus José Rodrigues Paranhos da Costa
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0142236

Urban Power Line Corridors as Novel Habitats for Grassland and Alien Plant Species in South-Western Finland
Cited by: 22
Author(s): Jussi Lampinen, Kalle Ruokolainen, Ari‐Pekka Huhta
Software Mentions: 6
Published: almost 11 years ago

10.1155/2021/6635526

Construction and Validation of a Ferroptosis-Related Prognostic Model for Gastric Cancer
Cited by: 33
Author(s): Xiaotao Jiang, Qiaofeng Yan, Linling Xie, Shiqi Xu, Kailin Jiang, Jiahua Huang, Yi Wen, Yanhua Yan, Junhui Zheng, Shiyun Tang, Kechao Nie, Zhihua Zheng, Jinglin Pan, Peng Liu, Yuancheng Huang, Xingrui Yan, Yushan Zou, Xuan Chen, Fengbin Liu, Peiwu Li, Kunhai Zhuang
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0210467

Literature optimized integration of gene expression for organ-specific evaluation of toxicogenomics datasets
Cited by: 0
Author(s): Katerina Taškova, Jean-Fred Fontaine, Ralf Mrowka, Miguel A. Andrade‐Navarro
Software Mentions: 6
Published: almost 8 years ago

10.1111/cea.13869

Association between nasal and nasopharyngeal bacterial colonization in early life and eczema phenotypes
Cited by: 2
Author(s): Chen Hu, Liesbeth Duijts, Evelien R. van Meel, Kirsten I M Looman, Jessica C. Kiefte–de Jong, Luba M. Pardo, Dirk Jan Hijnen, Suzanne G M A Pasmans, Johan C. de Jongste, Henriëtte A. Moll, Tamar Nijsten
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0254368

Identification and validation of a novel ferroptosis-related gene model for predicting the prognosis of gastric cancer patients
Cited by: 6
Author(s): Gang Liu, Jianying Ma, Gang Hu, Huan Jin
Software Mentions: 6
Published: over 5 years ago

10.1186/s13148-016-0241-2

Comparison of pre-processing methodologies for Illumina 450k methylation array data in familial analyses
Cited by: 11
Author(s): Emma Cazaly, Russell Thomson, James R. Marthick, Adele F. Holloway, Jac Charlesworth, Joanne L. Dickinson
Software Mentions: 6
Published: over 10 years ago

10.1038/s42003-021-02057-6

Inhibition of a nutritional endosymbiont by glyphosate abolishes mutualistic benefit on cuticle synthesis in Oryzaephilus surinamensis
Cited by: 19
Author(s): Julian Simon Thilo Kiefer, Suvdanselengee Batsukh, Eugen Bauer, Bin Hirota, Benjamin Weiß, Jürgen C. Wierz, Takema Fukatsu, Martin Kaltenpoth, Tobias Engl
Software Mentions: 6
Published: over 5 years ago

10.1186/s12885-021-07854-0

Tumor co-expression of progranulin and sortilin as a prognostic biomarker in breast cancer
Cited by: 8
Author(s): Karoline Berger, Sara Rhost, Svanheiður Rafnsdóttir, Éamon Hughes, Yvonne Magnusson, Maria Ekholm, Olle Stål, Lisa Rydén, Göran Landberg
Software Mentions: 6
Published: over 5 years ago

10.1002/ctm2.234

Epigenetic consequences of hormonal interactions between opposite‐sex twin fetuses
Cited by: 4
Author(s): Siming Kong, Yong Peng, Wei Chen, Xinyi Ma, Wei Yuan, Yangyu Zhao, Rong Li, Jie Qiao, Liying Yan
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12870-017-1103-6

Avocado fruit maturation and ripening: dynamics of aliphatic acetogenins and lipidomic profiles from mesocarp, idioblasts and seed
Cited by: 32
Author(s): Carlos E. Rodríguez López, Carmen Hernández-Brenes, Víctor Treviño, Rocío I. Díaz de la Garza
Software Mentions: 6
Published: about 9 years ago

10.7554/eLife.39209

Reconstructing the functions of endosymbiotic Mollicutes in fungus-growing ants
Cited by: 34
Author(s): Panagiotis Sapountzis, Mariya Zhukova, Jonathan Z. Shik, Morten Schiøtt, Jacobus J. Boomsma
Software Mentions: 6
Published: almost 8 years ago

10.1186/s12870-020-02680-1

Is salinity the main ecological factor that influences foliar nutrient resorption of desert plants in a hyper-arid environment?
Cited by: 11
Author(s): Lilong Wang, Xinfang Zhang, Shuang Xu
Software Mentions: 6
Published: about 6 years ago

10.1186/s12866-020-01739-1

Alter between gut bacteria and blood metabolites and the anti-tumor effects of Faecalibacterium prausnitzii in breast cancer
Cited by: 57
Author(s): Ji Ma, Lingqi Sun, Ying Liu, Hui Ren, Yali Shen, Feng Bi, Tao Zhang, Xin Wang
Software Mentions: 6
Published: over 6 years ago

10.1186/s12885-020-07438-4

A 38-gene model comprised of key TET2-associated genes shows additive utility to high-risk prostate cancer cases in the prognostication of biochemical recurrence
Cited by: 1
Author(s): Shivani Kamdar, Neil Fleshner, Bharati Bapat
Software Mentions: 6
Published: about 6 years ago

10.1186/s12915-016-0283-0

Secondary structure impacts patterns of selection in human lncRNAs
Cited by: 39
Author(s): Cinta Pegueroles, Toni Gabaldón
Software Mentions: 6
Published: over 10 years ago

10.7554/eLife.23361

A chloroplast retrograde signal, 3’-phosphoadenosine 5’-phosphate, acts as a secondary messenger in abscisic acid signaling in stomatal closure and germination
Cited by: 116
Author(s): Wannarat Pornsiriwong, Gonzalo M. Estavillo, Kai Xun Chan, Estee E-Ling Tee, Diep R Ganguly, Peter A. Crisp, Su Yin Phua, Chenchen Zhao, Jiaen Qiu, Jiyoung Park, Miing Tiem Yong, Nazia Nisar, Arun Kumar Yadav, Benjamin Schwessinger, John P. Rathjen, Christopher I. Cazzonelli, Philippa B. Wilson, Matthew Gilliham, Zhong‐Hua Chen, Barry J. Pogson
Software Mentions: 6
Published: over 9 years ago

10.1186/s12866-019-1540-5

Taxonomic features and comparisons of the gut microbiome from two edible fungus-farming termites (Macrotermes falciger; M. natalensis) harvested in the Vhembe district of Limpopo, South Africa
Cited by: 13
Author(s): Stephanie L. Schnorr, Courtney A. Hofman, Shandukani R. Netshifhefhe, Frances D. Duncan, Tanvi P. Honap, Julie J. Lesnik, Cecil M. Lewis
Software Mentions: 6
Published: over 7 years ago

10.1186/s12915-021-01147-5

Single-cell DNA and RNA sequencing reveals the dynamics of intra-tumor heterogeneity in a colorectal cancer model
Cited by: 13
Author(s): Hisayo Ono, Yasuhito Arai, Eisaku Furukawa, Daichi Narushima, Tetsuya Matsuura, Hiromi Nakamura, Daisuke Shiokawa, Masaya Nagai, Toshio Imai, Koshi Mimori, Koji Okamoto, Yoshitaka Hippo, Tatsuhiro Shibata, Mamoru Kato
Software Mentions: 6
Published: about 5 years ago

10.7554/eLife.66398

Tetrahydroxanthohumol, a xanthohumol derivative, attenuates high-fat diet-induced hepatic steatosis by antagonizing PPARγ
Cited by: 7
Author(s): Yang Zhang, Gerd Bobe, Cristobal L. Miranda, Malcolm B. Lowry, Victor L. Hsu, Christiane V. Löhr, Carmen P. Wong, Donald Β. Jump, Matthew M. Robinson, Thomas J. Sharpton, Claudia S. Maier, Jan F. Stevens, Adrian F. Gombart
Software Mentions: 6
Published: over 5 years ago

10.7717/peerj.12135

Biogeography rather than substrate type determines bacterial colonization dynamics of marine plastics
Cited by: 9
Author(s): Ashley K. Coons, Kathrin Busch, Mark Lenz, Ute Hentschel, Erik Borchert
Software Mentions: 6
Published: about 5 years ago

10.1186/s12859-017-1542-y

flippant–An R package for the automated analysis of fluorescence-based scramblase assays
Cited by: 0
Author(s): Richard Cotton, Birgit Ploier, Michael A. Goren, Anant K. Menon, Johannes Graumann
Software Mentions: 6
Published: over 9 years ago

10.1186/s13567-015-0177-0

Vaccination of pigs with the S48 strain of Toxoplasma gondii – safer meat for human consumption
Cited by: 42
Author(s): Alison Burrells, Julio Benavides, Germán Cantón, João Luís Garcia, Paul M. Bartley, Mintu Nath, Jackie Thomson, Francesca Chianini, Elisabeth A. Innes, Frank Katzer
Software Mentions: 6
Published: over 11 years ago

10.1007/s00572-021-01042-5

Ancient lineages of arbuscular mycorrhizal fungi provide little plant benefit
Cited by: 21
Author(s): Verena Säle, Javier Palenzuela, Concepción Azcón–Aguilar, Iván Sánchez-Castro, Gladstone Alves da Silva, Benjamin Seitz, Ewald Sieverding, Marcel G. A. van der Heijden, Fritz Oehl
Software Mentions: 6
Published: about 5 years ago

10.1186/1471-2105-13-S16-S10

A tutorial in displaying mass spectrometry-based proteomic data using heat maps
Cited by: 47
Author(s): Melissa Key
Software Mentions: 6
Published: almost 14 years ago

10.1093/jxb/erx018

Genome-wide association study unravels the genetic control of the apple volatilome and its interplay with fruit texture
Cited by: 50
Author(s): Brian Farneti, Mario Di Guardo, Iuliia Khomenko, Luca Cappellin, Franco Biasioli, Riccardo Velasco, Fabrizio Costa
Software Mentions: 6
Published: over 9 years ago

10.18632/aging.203260

Screening and identification of angiogenesis-related genes as potential novel prognostic biomarkers of hepatocellular carcinoma through bioinformatics analysis
Cited by: 6
Author(s): Zili Zhen, Zan Shen, Yanmei Hu, Peilong Sun
Software Mentions: 6
Published: over 5 years ago

10.1186/s40104-021-00580-4

Convergence of the turkey gut microbiota following cohabitation under commercial settings
Cited by: 1
Author(s): Elizabeth A. Miller, Brittanie Winfield, Bonnie Weber, Cristian Flores-Figueroa, Jeannette Muñoz-Aguayo, Jared Huisinga, Timothy J. Johnson
Software Mentions: 6
Published: over 5 years ago

10.1111/1556-4029.14482

Getting Rid of Dichotomous Sex Estimations: Why Logistic Regression Should be Preferred Over Discriminant Function Analysis
Cited by: 13
Author(s): Björn Bartholdy, Elena Sandoval, Menno L. P. Hoogland, Sarah Schrader
Software Mentions: 6
Published: over 6 years ago

10.1186/s40462-015-0050-9

Foraging behavior links climate variability and reproduction in North Pacific albatrosses
Cited by: 23
Author(s): Lesley H. Thorne, Elliott L. Hazen, Steven J. Bograd, David G. Foley, Melinda G. Conners, Michelle A. Kappes, Hyemi M. Kim, Daniel P. Costa, Yann Tremblay, Scott A. Shaffer
Software Mentions: 6
Published: about 11 years ago

10.34133/2020/1925495

Soybean Root System Architecture Trait Study through Genotypic, Phenotypic, and Shape-Based Clusters
Cited by: 30
Author(s): Kevin G. Falk, Talukder Z. Jubery, Jamie A. O’Rourke, Arti Singh, Soumik Sarkar, Baskar Ganapathysubramanian
Software Mentions: 6
Published: almost 7 years ago

10.3390/microorganisms8081225

Lactobacillus Mucosae Strain Promoted by a High-Fiber Diet in Genetic Obese Child Alleviates Lipid Metabolism and Modifies Gut Microbiota in ApoE-/- Mice on a Western Diet
Cited by: 19
Author(s): Tianyi Jiang, Huan Wu, Xin Yang, Yue Li, Ziyi Zhang, Feng Chen, Liping Zhao, Chenhong Zhang
Software Mentions: 6
Published: about 6 years ago

10.7150/jca.33345

Radiomic Nomogram: Pretreatment Evaluation of Local Recurrence in Nasopharyngeal Carcinoma based on MR Imaging
Cited by: 37
Author(s): Lu Zhang, Hongyu Zhou, Dongsheng Gu, Jie Tian, Bin Zhang, Di Dong, Xiaokai Mo, Jing Liu, Xiaoning Luo, Shufang Pei, Yang Dong, Wenhui Huang, Qiuyin Chen, Changhong Liang, Lian Zhou, Shuixing Zhang
Software Mentions: 6
Published: almost 8 years ago

10.1371/journal.pone.0246663

An open-sourced, web-based application to analyze weekly excess mortality based on the Short-term Mortality Fluctuations data series
Cited by: 38
Author(s): László Németh, Dmitri A. Jdanov, Vladimir M. Shkolnikov
Software Mentions: 6
Published: over 5 years ago

10.3390/insects10110412

Olfactory Learning in the Stingless Bee Melipona eburnea Friese (Apidae: Meliponini)
Cited by: 10
Author(s): Marisol Amaya–Márquez, Sergio Tusso, Johann Hernández, Juan Darío Jiménez, Harrington Wells, Charles I. Abramson
Software Mentions: 6
Published: almost 7 years ago

10.1371/journal.pone.0179180

Rigid geometry solves “curse of dimensionality” effects in clustering methods: An application to omics data
Cited by: 12
Author(s): Shun Adachi
Software Mentions: 6
Published: over 9 years ago

10.1186/s12864-019-6061-y

Mitochondrial genomic variation drives differential nuclear gene expression in discrete regions of Drosophila gene and protein interaction networks
Cited by: 12
Author(s): Jim A. Mossman, Leann M. Biancani, David M. Rand
Software Mentions: 6
Published: about 7 years ago

Projects: pypi: stats

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