pypi: scipy | Projects | Ecosyste.ms: Papers

10.1371/journal.pcbi.1009346

The importance of non-pharmaceutical interventions during the COVID-19 vaccine rollout
Cited by: 48
Author(s): Nicolò Gozzi, Paolo Bajardi, Nicola Perra
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pcbi.1005315

Novel Models of Visual Topographic Map Alignment in the Superior Colliculus
Cited by: 10
Author(s): Ruben A. Tikidji-Hamburyan, Tarek El‐Ghazawi, Jason W. Triplett
Software Mentions: 5
Published: almost 8 years ago

10.1016/j.celrep.2020.02.093

Biased Connectivity of Brain-wide Inputs to Ventral Subiculum Output Neurons
Cited by: 35
Author(s): Ryan Wee, Andrew F. MacAskill
Software Mentions: 5
Published: over 4 years ago

10.7554/eLife.05421

Enabling X-ray free electron laser crystallography for challenging biological systems from a limited number of crystals
Cited by: 106
Author(s): Monarin Uervirojnangkoorn, Oliver B. Zeldin, A.Y. Lyubimov, Johan Hattne, Aaron S. Brewster, Nicholas K. Sauter, Axel T. Brunger, William I. Weis
Software Mentions: 5
Published: over 9 years ago

10.1371/journal.pcbi.1005541

High-order epistasis shapes evolutionary trajectories
Cited by: 88
Author(s): Zachary Sailer, Michael J. Harms
Software Mentions: 5
Published: over 7 years ago

10.1007/s10334-020-00900-1

Simulated basis sets for semi-LASER: the impact of including shaped RF pulses and magnetic field gradients
Cited by: 3
Author(s): Oscar Jalnefjord, Patrick Pettersson, Lukas Lundholm, Maria Ljungberg
Software Mentions: 5
Published: almost 4 years ago

10.3389/fmicb.2020.603657

Human Papillomavirus Infections in Cervical Samples From HIV-Positive Women: Evaluation of the Presence of the Nonavalent HPV Genotypes and Genetic Diversity
Cited by: 3
Author(s): Catia Sias, Valerio Guarrasi, Claudia Minosse, Daniele Lapa, Franca Del Nonno, Maria Rosaria Capobianchi, Anna Rosa Garbuglia, Paola Del Porto, Paola Paci
Software Mentions: 5
Published: almost 4 years ago

10.1186/s12864-018-4704-z

OMGene: mutual improvement of gene models through optimisation of evolutionary conservation
Cited by: 6
Author(s): Michael Dunne, Steven Kelly
Software Mentions: 5
Published: over 6 years ago

10.3389/fnhum.2021.700281

A Neural Network Model of Lexical-Semantic Competition During Spoken Word Recognition
Cited by: 3
Author(s): Mihaela Duta, Kim Plunkett
Software Mentions: 5
Published: about 3 years ago

10.1093/gigascience/giaa043

Antibiotic resistomes discovered in the gut microbiomes of Korean swine and cattle
Cited by: 27
Author(s): Suk-Kyung Lim, Dong‐Jun Kim, Dong Chan Moon, Youna Cho, Mina Rho
Software Mentions: 5
Published: over 4 years ago

10.7554/eLife.59404

Massively multiplex single-molecule oligonucleosome footprinting
Cited by: 41
Author(s): Nour J. Abdulhay, Christopher A. McNally, Laura J Hsieh, Sivakanthan Kasinathan, Aidan M. Keith, Laurel S Estes, Mehran Karimzadeh, Jason G. Underwood, Hani Goodarzi, Geeta J. Narlikar, Vijay Ramani
Software Mentions: 5
Published: almost 4 years ago

10.3390/life11040278

Epigenetic Characteristics of Human Subtelomeres Vary in Cells Utilizing the Alternative Lengthening of Telomeres (ALT) Pathway
Cited by: 1
Author(s): Shir Toubiana, Aya Tzur-Gilat, Sara Selig
Software Mentions: 5
Published: over 3 years ago

10.7554/eLife.43415

Precise excitation-inhibition balance controls gain and timing in the hippocampus
Cited by: 67
Author(s): Aanchal Bhatia, Sahil Moza, Upinder S. Bhalla
Software Mentions: 5
Published: over 5 years ago

10.3389/fgene.2021.624259

Galaxy and MEAN Stack to Create a User-Friendly Workflow for the Rational Optimization of Cancer Chemotherapy
Cited by: 4
Author(s): Jorge Guerra Pires, Gilberto Ferreira da Silva, Thomas Weyssow, Alessandra Jordano Conforte, Dante Pagnoncelli, Fabrício Silva, Nicolas Carels
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pcbi.1007636

Structural diversity of B-cell receptor repertoires along the B-cell differentiation axis in humans and mice
Cited by: 23
Author(s): Aleksandr Kovaltsuk, Matthew I. J. Raybould, Wing Ki Wong, Claire Marks, Sebastian Kelm, James Snowden, Johannes Trück, Charlotte M. Deane
Software Mentions: 5
Published: almost 5 years ago

10.3389/fgene.2019.01387

Analysis of Single-Cell Gene Pair Coexpression Landscapes by Stochastic Kinetic Modeling Reveals Gene-Pair Interactions in Development
Cited by: 7
Author(s): Cameron P. Gallivan, Honglei Ren, Elizabeth L. Read
Software Mentions: 5
Published: almost 5 years ago

10.7554/eLife.55832

Temporal integration of auxin information for the regulation of patterning
Cited by: 79
Author(s): Carlos Galván‐Ampudia, Guillaume Cerutti, Jonathan Legrand, Géraldine Brunoud, Raquel Martín-Arevalillo, Romain Azaïs, Vincent Bayle, Steven Moussu, Christian Wenzl, Yvon Jaillais, Jan U. Lohmann, Christophe Godin, Teva Vernoux
Software Mentions: 5
Published: over 4 years ago

10.7554/eLife.71393

Binding affinity landscapes constrain the evolution of broadly neutralizing anti-influenza antibodies
Cited by: 18
Author(s): Angela M Phillips, Katherine R. Lawrence, Alief Moulana, Thomas Dupic, Jeffrey S. Chang, Milo S. Johnson, Ivana Cvijović, Thierry Mora, Aleksandra M. Walczak, Michael M. Desai
Software Mentions: 5
Published: about 3 years ago

10.7554/eLife.54026

A decentralised neural model explaining optimal integration of navigational strategies in insects
Cited by: 52
Author(s): Xuelong Sun, Shigang Yue, Michael Mangan
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pcbi.1004105

Transcriptome Sequencing Reveals Potential Mechanism of Cryptic 3’ Splice Site Selection in SF3B1-mutated Cancers
Cited by: 173
Author(s): Christopher DeBoever, Emanuela M. Ghia, Peter J. Shepard, Laura Z. Rassenti, Christian Barrett, Kristen Jepsen, Catriona Jamieson, Dennis A. Carson, Thomas J. Kipps, Kelly A. Frazer
Software Mentions: 5
Published: over 9 years ago

10.1093/gigascience/giaa054

Fcirc: A comprehensive pipeline for the exploration of fusion linear and circular RNAs
Cited by: 5
Author(s): Zhaoqing Cai, Hongzhang Xue, Yue Xu, Jens Köhler, Xiaoyu Cheng, Yanjun Dai, Jie Zheng, Haiyun Wang
Software Mentions: 5
Published: over 4 years ago

10.7554/eLife.69068

Reconciling functional differences in populations of neurons recorded with two-photon imaging and electrophysiology
Cited by: 26
Author(s): Joshua H. Siegle, Peter Ledochowitsch, Xiaoxuan Jia, Daniel Millman, Gabriel Koch Ocker, Shiella Caldejon, Linzy Casal, Andy Cho, Daniel J. Denman, Séverine Durand, Peter A. Groblewski, Gregg Heller, India Kato, Sara Kivikas, Jérôme Lecoq, Chelsea Nayan, Kiet Ngo, Philip R. Nicovich, Kat North, Tamina K Ramirez, Jackie Swapp, Xana Waughman, Ali Williford, Shawn R. Olsen, Christof Koch, Michael A. Buice, Saskia E. J. de Vries
Software Mentions: 5
Published: over 3 years ago

10.1186/s13059-020-02192-z

The evolution of relapse of adult T cell acute lymphoblastic leukemia
Cited by: 9
Author(s): Inés Sentís, Santiago González, Eulàlia Genescà, Violeta García-Hernández, Ferran Muiños, Celia Guadalupe Morales González, Erika López-Arribillaga, Jéssica González, Lierni Fernández‐Ibarrondo, Loris Mularoni, Lluís Espinosa, Beatríz Bellosillo, Josep‐María Ribera, Anna Bigas, Abel González-Pérez, Núria López‐Bigas
Software Mentions: 5
Published: almost 4 years ago

10.1107/S2052252517006212

Healing X-ray scattering images
Cited by: 10
Author(s): Jiliang Liu, Julien Lhermitte, Ye Tian, Zheng Zhang, D. Yu, Kevin G. Yager
Software Mentions: 5
Published: over 7 years ago

10.1002/brb3.1974

Self‐administered biofeedback treatment app for pediatric migraine: A randomized pilot study
Cited by: 3
Author(s): Anker Stubberud, Mattias Linde, Eiliv Brenner, Martin Heier, Alexander Olsen, Anne Hege Aamodt, Gøril Bruvik Gravdahl, Erling Tronvik
Software Mentions: 5
Published: almost 4 years ago

10.1111/acel.13230

COVID‐19 is an emergent disease of aging
Cited by: 91
Author(s): Didac Santesmasses, José Pedro Castro, Aleksandr Zenin, Anastasia V. Shindyapina, Maxim V. Gerashchenko, Bohan Zhang, Csaba Kerepesi, Sun Hee Yim, П. О. Федичев, Vadim N. Gladyshev
Software Mentions: 5
Published: about 4 years ago

10.1038/s41598-020-60366-y

Engineering Meteorological Features to Select Stress Tolerant Hybrids in Maize
Cited by: 6
Author(s): Gordan Mimić, Sanja Brdar, M. Brkic, Marko Panić, Oskar Marko, Vladimir Crnojević
Software Mentions: 5
Published: over 4 years ago

10.3389/fmicb.2017.01516

Long-term Fertilization Structures Bacterial and Archaeal Communities along Soil Depth Gradient in a Paddy Soil
Cited by: 68
Author(s): Yunfu Gu, Yingyan Wang, Liangang Shen, Quanju Xiang, Xiumei Yu, Ke Zhao, Likou Zou, Qiang Chen, Shuangshuang Tu, Xiaoping Zhang
Software Mentions: 5
Published: over 7 years ago

10.1186/2047-217X-3-37

Shared data for intensity modulated radiation therapy (IMRT) optimization research: the CORT dataset
Cited by: 68
Author(s): David Craft, Mark Bangert, Tammy M. Long, Dávid Papp, Jan Unkelbach
Software Mentions: 5
Published: almost 10 years ago

10.1002/advs.202001402

TRADES: Targeted RNA Demethylation by SunTag System
Cited by: 25
Author(s): Jing Mo, Zonggui Chen, Shanshan Qin, Shu Li, Chuangang Liu, Lu Zhang, Ruoxi Ran, Ying Kong, Fang Wang, Song-Mei Liu, Yu Zhou, Xiaolian Zhang, Xiaocheng Weng, Xiang Zhou
Software Mentions: 5
Published: over 4 years ago

10.1128/mSystems.00913-20

Genome-Scale Metabolic Models and Machine Learning Reveal Genetic Determinants of Antibiotic Resistance in Escherichia coli and Unravel the Underlying Metabolic Adaptation Mechanisms
Cited by: 23
Author(s): Nicole Pearcy, Yue Hu, Michelle Baker, Alexandre Maciel-Guerra, Ning Xue, Wei Wang, Jasmeet Kaler, Zong–Gen Peng, Fengqin Li, Tania Dottorini
Software Mentions: 5
Published: about 3 years ago

10.7554/eLife.64522

Topological signatures in regulatory network enable phenotypic heterogeneity in small cell lung cancer
Cited by: 33
Author(s): Lakshya Chauhan, Uday Ram, Kishore Hari, Mohit Kumar Jolly
Software Mentions: 5
Published: over 3 years ago

10.7554/eLife.66018

Information flow, cell types and stereotypy in a full olfactory connectome
Cited by: 82
Author(s): Philipp Schlegel, Alexander Shakeel Bates, Tomke Stürner, Sridhar R. Jagannathan, Nikolas Drummond, Joseph Hsu, Laia Serratosa Capdevila, Alexandre Javier, Elizabeth C. Marin, Asa Barth-Maron, Imaan F M Tamimi, Feng Li, Gerald M. Rubin, Stephen M. Plaza, Marta Costa, Gregory Jefferis
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0215054

Numerical simulations for the Toda lattices Hamiltonian system: Higher order symplectic illustrative perspective
Cited by: 1
Author(s): Asif Mushtaq, Amna Noreen, Muhammad Farooq
Software Mentions: 5
Published: over 5 years ago

10.1186/s12859-019-2612-0

Barcode identification for single cell genomics
Cited by: 15
Author(s): Akshay Tambe, Lior Pachter
Software Mentions: 4
Published: almost 6 years ago

10.1063/1.5132692

Liquid-like and rigid-body motions in molecular-dynamics simulations of a crystalline protein
Cited by: 14
Author(s): David C. Wych, James S. Fraser, David L. Mobley, Michael E. Wall
Software Mentions: 4
Published: about 5 years ago

10.1155/2017/2794040

The Effect of Different Pollination on the Expression of Dangshan Su Pear MicroRNA
Cited by: 12
Author(s): Xi Cheng, Chongchong Yan, Jinyun Zhang, Chenhui Ma, Shumei Li, Qing Jin, Nan Zhang, Yunpeng Cao, Yi Lin, Yongping Cai
Software Mentions: 4
Published: almost 8 years ago

10.3390/sports9050068

An Analysis of Sport-Specific Pain Symptoms through Inter-Individual Training Differences in CrossFit
Cited by: 3
Author(s): Maria Alexandra Bernstorff, Norman Schumann, Nader Maai, Thomas A. Schildhauer, Matthias Königshausen
Software Mentions: 4
Published: over 3 years ago

10.1186/s12859-019-2864-8

Balancing sensitivity and specificity in distinguishing TCR groups by CDR sequence similarity
Cited by: 18
Author(s): Neerja Thakkar, Chris Bailey‐Kellogg
Software Mentions: 4
Published: over 5 years ago

10.1186/s13059-015-0721-2

OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy
Cited by: 2,420
Author(s): David Emms, Steven Kelly
Software Mentions: 4
Published: over 9 years ago

10.1111/ejn.14292

Task‐dependent responses to muscle vibration during reaching
Cited by: 7
Author(s): Johannes Keyser, Rob Ramakers, W. Pieter Medendorp, Luc P. J. Selen
Software Mentions: 4
Published: almost 6 years ago

10.1186/s13059-018-1392-6

Dominant integration locus drives continuous diversification of plant immune receptors with exogenous domain fusions
Cited by: 99
Author(s): Paul Bailey, Christian Schudoma, William J. Jackson, Erin Baggs, Gulay Dagdas, Wilfried Haerty, Matthew J. Moscou, Ksenia V. Krasileva
Software Mentions: 4
Published: almost 7 years ago

10.3390/genes10060433

BarkBase: Epigenomic Annotation of Canine Genomes
Cited by: 26
Author(s): Kate Megquier, Diane P. Genereux, Jessica P. Hekman, Ross Swofford, Jason Turner-Maier, Jeremy Johnson, Jacob Alonso, Li Xue, Kathleen M. Morrill, Lynne J. Anguish, Michele Koltookian, Brittney Logan, Claire R. Sharp, Lluís Ferrer, Kerstin Lindblad‐Toh, Vicki N. Meyers-Wallen, Andrew M. Hoffman, Elinor K. Karlsson
Software Mentions: 4
Published: over 5 years ago

10.3390/genes11070775

Evolutionary History of the Risk of SNPs for Diffuse-Type Gastric Cancer in the Japanese Population
Cited by: 2
Author(s): Risa L. Iwasaki, Koji Ishiya, Hideaki Kanzawa-Kiriyama, Yosuke Kawai, Jun Gojobori, Yoko Satta
Software Mentions: 4
Published: over 4 years ago

10.1186/s13007-020-00612-6

High-throughput three-dimensional visualization of root system architecture of rice using X-ray computed tomography
Cited by: 63
Author(s): Shota Teramoto, Satoko Takayasu, Yuka Kitomi, Yumiko Arai‐Sanoh, Takanari Tanabata, Yusaku Uga
Software Mentions: 4
Published: over 4 years ago

10.1111/tpj.14312

μ<scp>CT</scp> trait analysis reveals morphometric differences between domesticated temperate small grain cereals and their wild relatives
Cited by: 19
Author(s): Nathan Hughes, Hugo R. Oliveira, Nick Fradgley, Fiona Corke, James Cockram, John H. Doonan, Cândida Nibau
Software Mentions: 4
Published: over 5 years ago

10.1016/j.envsoft.2020.104703

PiSCES: Pi(scine) stream community estimation system
Cited by: 3
Author(s): Mike Cyterski, Craig Barber, Mike Galvin, Rajbir Parmar, John M. Johnston, Deron Smith, Amber R. Ignatius, Lourdes Prieto, Kurt Wolfe
Software Mentions: 4
Published: over 4 years ago

10.1007/s12020-020-02355-9

Mapping endocrine toxicity spectrum of immune checkpoint inhibitors: a disproportionality analysis using the WHO adverse drug reaction database, VigiBase
Cited by: 26
Author(s): Xuefeng Bai, Xiahong Lin, Kainan Zheng, Xiaoyu Chen, Xiaohong Wu, Yinqiong Huang, Yong Zhuang
Software Mentions: 4
Published: over 4 years ago

10.3389/fpubh.2019.00081

Crowdbreaks: Tracking Health Trends Using Public Social Media Data and Crowdsourcing
Cited by: 41
Author(s): Martin Müller, Marcel Salathé
Software Mentions: 4
Published: over 5 years ago

10.1128/mSystems.00731-19

Consistent Metagenome-Derived Metrics Verify and Delineate Bacterial Species Boundaries
Cited by: 113
Author(s): Matthew R. Olm, Alexander Crits-Christoph, Spencer Diamond, Adi Lavy, Paula B. Matheus Carnevali, Jillian F. Banfield
Software Mentions: 4
Published: almost 5 years ago

10.1098/rstb.2019.0175

Pronounced somatic bottleneck in mitochondrial DNA of human hair
Cited by: 17
Author(s): Alison Barrett, Barbara Arbeithuber, Arslan Zaidi, Peter R. Wilton, Ian M. Paul, Rasmus Nielsen, Kateryna D. Makova
Software Mentions: 4
Published: almost 5 years ago

10.3389/fpsyt.2020.532623

Identification of Veterans With PTSD Based on EEG Features Collected During Sleep
Cited by: 3
Author(s): Swamy Laxminarayan, Chao Wang, Tatsuya Oyama, J David Cashmere, Anne Germain, Jaques Reifman
Software Mentions: 4
Published: about 4 years ago

10.3390/bioengineering8020026

An Open-Source COVID-19 CT Dataset with Automatic Lung Tissue Classification for Radiomics
Cited by: 19
Author(s): Paolo Zaffino, Aldo Marzullo, Sara Moccia, Francesco Calimeri, Elena De Momi, Bernardo Bertucci, Pier Paolo Arcuri, Maria Francesca Spadea
Software Mentions: 4
Published: almost 4 years ago

10.7717/peerj.8952

The corepressor NCOR1 and OCT4 facilitate early reprogramming by suppressing fibroblast gene expression
Cited by: 6
Author(s): Georgina Peñalosa-Ruiz, Klaas W. Mulder, G.J.C. Veenstra
Software Mentions: 4
Published: over 4 years ago

10.3389/fonc.2020.00418

Comparison and Fusion of Deep Learning and Radiomics Features of Ground-Glass Nodules to Predict the Invasiveness Risk of Stage-I Lung Adenocarcinomas in CT Scan
Cited by: 36
Author(s): Xianwu Xia, Jing Gong, Hao Wen, Ting Yang, Yeqing Lin, Shengping Wang, Weijun Peng
Software Mentions: 4
Published: over 4 years ago

10.1186/s12859-021-03961-8

Tremor assessment using smartphone sensor data and fuzzy reasoning
Cited by: 5
Author(s): Caro Fuchs, Marco S. Nobile, Guillaume Zamora, Aurélie Degeneffe, Pieter L. Kubben, Uzay Kaymak
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-021-83901-x

Continuous glucose monitoring during pregnancy in healthy mice
Cited by: 4
Author(s): Caroline Wuyts, Caroline Simoens, Shirly Pinto, Koenraad Philippaert, Rudi Vennekens
Software Mentions: 4
Published: over 3 years ago

10.1186/s13015-015-0061-5

Interpretation and approximation tools for big, dense Markov chain transition matrices in population genetics
Cited by: 7
Author(s): Katja Reichel, Valentin Bahier, Cédric Midoux, Nicolas Parisey, Jean-Pierre Masson, Solenn Stoeckel
Software Mentions: 4
Published: almost 9 years ago

10.1038/s41598-021-83212-1

A novel Python module for statistical analysis of turbulence (P-SAT) in geophysical flows
Cited by: 1
Author(s): Mayank Agarwal, Vishal Deshpande, David Katoshevski, Bimlesh Kumar
Software Mentions: 4
Published: almost 4 years ago

10.1016/j.dib.2017.10.038

Programs for the calculation of the spinodal decomposition growth rate and the spinodal gap in nanoparticles
Cited by: 0
Author(s): Evgeny Pogorelov, Julia Kundin
Software Mentions: 4
Published: almost 7 years ago

10.1038/s41598-020-77263-z

Musical coordination in a large group without plans nor leaders
Cited by: 9
Author(s): Louise Goupil, Pierre Saint‐Germier, Gaëlle Rouvier, Diemo Schwarz, Clément Canonne
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-020-74775-6

A digital reconstruction of the 1630–1631 large plague outbreak in Venice
Cited by: 6
Author(s): Gianrocco Lazzari, Giovanni Colavizza, Fabio Bortoluzzi, Davide Drago, Andrea Erboso, Francesca Zugno, Frédé́ric Kaplan, Marcel Salathé
Software Mentions: 4
Published: about 4 years ago

10.1038/s41598-020-76272-2

Lateral diffusion of CD14 and TLR2 in macrophage plasma membrane assessed by raster image correlation spectroscopy and single particle tracking
Cited by: 6
Author(s): Sara Matarazzo, Markus Rose, Suman Ranjit, Michelle A. Digman, Dawn M. E. Bowdish, Jose M. Moran‐Mirabal
Software Mentions: 4
Published: about 4 years ago

10.15252/msb.20167456

A photoconversion model for full spectral programming and multiplexing of optogenetic systems
Cited by: 29
Author(s): Evan J. Olson, Constantine N. Tzouanas, Jeffrey J. Tabor
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0238090

Simulation of the COVID-19 epidemic on the social network of Slovenia: Estimating the intrinsic forecast uncertainty
Cited by: 22
Author(s): Žiga Zaplotnik, Aleksandar Gavrić, Luka Medic
Software Mentions: 4
Published: about 4 years ago

10.1186/s40360-018-0282-6

eToxPred: a machine learning-based approach to estimate the toxicity of drug candidates
Cited by: 77
Author(s): Limeng Pu, Misagh Naderi, Tairan Liu, Hsiao-Chun Wu, Supratik Mukhopadhyay, Michał Bryliński
Software Mentions: 4
Published: almost 6 years ago

10.3389/fnins.2021.626723

Beta and Theta Oscillations Correlate With Subjective Time During Musical Improvisation in Ecological and Controlled Settings: A Single Subject Study
Cited by: 5
Author(s): Nicolas Farrugia, Alix Lamouroux, Christophe Rocher, Jules Bouvet, Giulia Lioi
Software Mentions: 4
Published: over 3 years ago

10.1186/s12859-019-2798-1

WASABI: a dynamic iterative framework for gene regulatory network inference
Cited by: 32
Author(s): Arnaud Bonnaffoux, Ulysse Herbach, Richard Angélique, Anissa Guillemin, Sandrine Gonin-Giraud, Pierre-Alexis Gros, Olivier Gandrillon
Software Mentions: 4
Published: over 5 years ago

10.1016/j.csbj.2017.01.001

Detection of Side Chain Rearrangements Mediating the Motions of Transmembrane Helices in Molecular Dynamics Simulations of G Protein-Coupled Receptors
Cited by: 14
Author(s): Zied Gaieb, Dimitrios Morikis
Software Mentions: 4
Published: almost 8 years ago

10.1038/s41598-019-46686-8

High-throughput stability screening for detergent-solubilized membrane proteins
Cited by: 69
Author(s): Vadim Kotov, Kim Bartels, Katharina Veith, Inokentijs Josts, Udaya Kumar Tiruttani Subhramanyam, Christian Günther, Jörg Labahn, Thomas C. Marlovits, Isabel Moraes, Henning Tidow, Christian Löw, María García-Alai
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0216453

Aerodigestive sampling reveals altered microbial exchange between lung, oropharyngeal, and gastric microbiomes in children with impaired swallow function
Cited by: 12
Author(s): Claire Duvallet, Kara Larson, Scott B. Snapper, Sonia Iosim, Ann Lee, Katherine Freer, Kara May, Eric J. Alm, Rachel Rosen
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-020-3495-9

YSMR: a video tracking and analysis program for bacterial motility
Cited by: 3
Author(s): Julian Schwanbeck, Ines Oehmig, Jerôme Dretzke, Andreas E. Zautner, Uwe Groß, Wolfgang Bohne
Software Mentions: 4
Published: over 4 years ago

10.3389/fnbot.2019.00076

Hybrid Brain-Computer-Interfacing for Human-Compliant Robots: Inferring Continuous Subjective Ratings With Deep Regression
Cited by: 3
Author(s): Lukas Dominique Josef Fiederer, Martin A. Volker, Robin Tibor Schirrmeister, Wolfram Burgard, Joschka Boedecker, Tonio Ball
Software Mentions: 4
Published: about 5 years ago

10.1038/s41598-019-50790-0

Signal flow control of complex signaling networks
Cited by: 6
Author(s): Daewon Lee, Kwang-Hyun Cho
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0009595

The Viscoelastic Properties of Passive Eye Muscle in Primates. III: Force Elicited by Natural Elongations
Cited by: 19
Author(s): Christian Quaia, Howard S. Ying, Lance M. Optican
Software Mentions: 4
Published: over 14 years ago

10.3389/fninf.2018.00090

Reproducible Neural Network Simulations: Statistical Methods for Model Validation on the Level of Network Activity Data
Cited by: 24
Author(s): Robin Gutzen, Michael von Papen, Guido Trensch, Pietro Quaglio, Sonja Grün, Michael Denker
Software Mentions: 4
Published: almost 6 years ago

10.3389/fninf.2014.00015

Data management routines for reproducible research using the G-Node Python Client library
Cited by: 12
Author(s): Andrey Sobolev, Stoewer Adrian, Michael A. Pereira, Christian Johannes Kellner, Christian Garbers, Philipp L. Rautenberg, Thomas Wachtler
Software Mentions: 4
Published: over 10 years ago

10.1186/s12859-019-2781-x

Computational enhancer prediction: evaluation and improvements
Cited by: 10
Author(s): Hasiba Asma, Marc S. Halfon
Software Mentions: 4
Published: over 5 years ago

10.1038/s41598-019-39847-2

Host Taxon Predictor - A Tool for Predicting Taxon of the Host of a Newly Discovered Virus
Cited by: 28
Author(s): Wojciech Gałan, Maciej Bąk, Małgorzata Jakubowska
Software Mentions: 4
Published: over 5 years ago

10.3389/fninf.2021.642933

Polynomial, piecewise-Linear, Step (PLS): A Simple, Scalable, and Efficient Framework for Modeling Neurons
Cited by: 3
Author(s): Ruben A. Tikidji-Hamburyan, Matthew T. Colonnese
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-018-24318-x

EEG Analytics for Early Detection of Autism Spectrum Disorder: A data-driven approach
Cited by: 206
Author(s): William J. Bosl, Helen Tager‐Flusberg, Charles A. Nelson
Software Mentions: 4
Published: over 6 years ago

10.1186/s12911-019-0805-0

Identifying clinically important COPD sub-types using data-driven approaches in primary care population based electronic health records
Cited by: 54
Author(s): Maria Pikoula, Jennifer K Quint, Francis Nissen, Harry Hemingway, Liam Smeeth, Spiros Denaxas
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0212189

Preprocessing 2D data for fast convex hull computations
Cited by: 2
Author(s): Oswaldo Cadenas, Graham M. Megson
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0121233

Disease Specific Productivity of American Cancer Hospitals
Cited by: 0
Author(s): Jeffrey A. Goldstein, Vinay Prasad
Software Mentions: 4
Published: over 9 years ago

10.1038/s42003-020-01419-w

Distortion of the bilayer and dynamics of the BAM complex in lipid nanodiscs
Cited by: 27
Author(s): M.G. Iadanza, Bob Schiffrin, Paul White, Matthew Watson, Jim E. Horne, A.J. Higgins, Antonio N. Calabrese, David J. Brockwell, Roman Tůma, Antreas C. Kalli, Sheena E. Radford, Neil A. Ranson
Software Mentions: 4
Published: almost 4 years ago

10.1074/mcp.O117.067728

Covariation of Peptide Abundances Accurately Reflects Protein Concentration Differences
Cited by: 62
Author(s): Bo Zhang, Mohammad Pirmoradian, Roman A. Zubarev, Lukas Käll
Software Mentions: 4
Published: over 7 years ago

10.1111/acel.13443

The antagonistic pleiotropy of insulin‐like growth factor 1
Cited by: 22
Author(s): William B. Zhang, Kenny Ye, Nir Barzilai, Sofiya Milman
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0050039

Word Decoding of Protein Amino Acid Sequences with Availability Analysis: A Linguistic Approach
Cited by: 20
Author(s): Kenta Motomura, Tomohiro Fujita, Motosuke Tsutsumi, Satsuki Kikuzato, Morikazu Nakamura, Joji M. Otaki
Software Mentions: 4
Published: about 12 years ago

10.1371/journal.pone.0119807

Protocols and Programs for High-Throughput Growth and Aging Phenotyping in Yeast
Cited by: 48
Author(s): Paul P. Jung, Nils Christian, Daniel P. Kay, Alexander Skupin, Carole L. Linster
Software Mentions: 4
Published: over 9 years ago

10.1186/s12920-020-0659-4

Impact of mutations in DNA methylation modification genes on genome-wide methylation landscapes and downstream gene activations in pan-cancer
Cited by: 16
Author(s): Chai-Jin Lee, Hongryul Ahn, Dabin Jeong, Minwoo Pak, Ji Hwan Moon, Sun Kim
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0245368

Utilization of the Naranjo scale to evaluate adverse drug reactions at a free-standing children’s hospital
Cited by: 11
Author(s): Madhavi Murali, Sarah L. Suppes, Keith Feldman, Jennifer L. Goldman
Software Mentions: 4
Published: almost 4 years ago

10.3389/fninf.2019.00064

The Dmipy Toolbox: Diffusion MRI Multi-Compartment Modeling and Microstructure Recovery Made Easy
Cited by: 44
Author(s): Rutger Fick, Demián Wassermann, Rachid Deriche
Software Mentions: 4
Published: about 5 years ago

10.1186/s12859-021-04329-8

DI2: prior-free and multi-item discretization of biological data and its applications
Cited by: 2
Author(s): Leonardo Alexandre, Rafael S. Costa, Rui Henriques
Software Mentions: 4
Published: about 3 years ago

10.15252/msb.20167233

A method for high‐throughput production of sequence‐verified <scp>DNA</scp> libraries and strain collections
Cited by: 36
Author(s): Justin D. Smith, Ulrich Schlecht, Weihong Xu, Sundari Suresh, Joe Horecka, Michael Proctor, Raeka S. Aiyar, Richard A. O. Bennett, Angela M. Chu, Yong Fuga Li, Kevin Roy, Ronald W. Davis, Lars M. Steinmetz, Richard W. Hyman, Sasha F. Levy, Robert P. St.Onge
Software Mentions: 4
Published: almost 8 years ago

10.1038/s42003-021-02361-1

Multiplexed imaging analysis of the tumor-immune microenvironment reveals predictors of outcome in triple-negative breast cancer
Cited by: 21
Author(s): Aalok Patwa, Rikiya Yamashita, Long Jin, Tyler Risom, Michael Angelo, Leeat Keren, Daniel L. Rubin
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-017-13828-9

A generalized simulation development approach for predicting refugee destinations
Cited by: 54
Author(s): Diana Suleimenova, David Bell, Derek Groen
Software Mentions: 4
Published: about 7 years ago

10.1371/journal.pone.0163556

Separating Predicted and Perceived Sensory Consequences of Motor Learning
Cited by: 23
Author(s): Bernard Marius ’t Hart, Denise Y. P. Henriques
Software Mentions: 4
Published: about 8 years ago

10.3389/fncir.2017.00019

NCAM Regulates Inhibition and Excitability in Layer 2/3 Pyramidal Cells of Anterior Cingulate Cortex
Cited by: 4
Author(s): Xuying Zhang, Chelsea S. Sullivan, Megan B. Kratz, Michael R. Kasten, Patricia F. Maness, Paul B. Manis
Software Mentions: 4
Published: over 7 years ago

10.1038/s41598-017-04375-4

Comparative genetic, proteomic and phosphoproteomic analysis of C. elegans embryos with a focus on ham-1/STOX and pig-1/MELK in dopaminergic neuron development
Cited by: 11
Author(s): Sarah-Lena Offenburger, Dalila Bensaddek, Alejandro Brenes Murillo, Anton Gartner
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0224143

Assessing reliability of intra-tumor heterogeneity estimates from single sample whole exome sequencing data
Cited by: 14
Author(s): J. Abecassis, Anne-Sophie Hamy, Cécile Laurent, Benjamin Sadacca, Hélène Bonsang-Kitzis, Fabien Reyal, Jean-Philippe Vert
Software Mentions: 4
Published: about 5 years ago

Projects: pypi: scipy

Papers Mentioning scipy 1,071