Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1004105

https://doi.org/10.1371/journal.pcbi.1004105

Transcriptome Sequencing Reveals Potential Mechanism of Cryptic 3’ Splice Site Selection in SF3B1-mutated Cancers

Cited by: 173
Author(s): Christopher DeBoever, Emanuela M. Ghia, Peter J. Shepard, Laura Z. Rassenti, Christian Barrett, Kristen Jepsen, Catriona Jamieson, Dennis A. Carson, Thomas J. Kipps, Kelly A. Frazer
Published: over 9 years ago

Software Mentions 5

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: DEXSeq
Inference of differential exon usage in RNA-Seq
Papers that mentioned: 226
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: Archive
Simple library that provides a common interface for extracting zip and tar archives.
Papers that mentioned: 363
pypi: scipy
Fundamental algorithms for scientific computing in Python
Papers that mentioned: 1,071