Projects: pypi: scikit-learn

https://packages.ecosyste.ms/registries/pypi.org/packages/scikit-learn

A set of python modules for machine learning and data mining
72 versions
Latest release: almost 3 years ago
5,918 dependent packages
43,777,417 downloads last month

Enhanced Analysis
Educational Contributors: a.joly@ulg.ac.be vanderplas@astro.washington.edu bh00038@cvplws63.eps.surrey.ac.uk ha258@cornell.edu satra@mit.edu zl2480@columbia.edu pinto@alum.mit.edu jz4721@nyu.edu matteo.visconti.gr@dartmouth.edu vighneshbirodkar@nyu.edu robert.l.marchman@dartmouth.edu rs2715@stern.nyu.edu claire.savard@colorado.edu aaaagrawal@iitb.ac.in ihaque@cs.stanford.edu rspeer@mit.edu mluessi@nmr.mgh.harvard.edu amitibo@tx.technion.ac.il ericchang2017@u.northwestern.edu jkarno@seas.upenn.edu minghui.liu@trincoll.edu m.lyra@sussex.ac.uk andrew.knyazev@ucdenver.edu lamb@cs.stanford.edu camilo@neurostat.mit.edu martino.sorbaro@ed.ac.uk t.sheerman-chase@surrey.ac.uk cgohlke@uci.edu batulaa@drexel.edu kcarnold@alum.mit.edu apw@seas.harvard.edu abie@alum.mit.edu rossbar@berkeley.edu alceballosa@unal.edu.co fhoang7@berkeley.edu hechen@seas.upenn.edu stefan@sun.ac.za deepyaman.datta@utexas.edu rebekah.kim@columbia.edu shubham.bhardwaj2015@vit.ac.in slama@berkeley.edu nisingh@wharton.upenn.edu kanikas3@vt.edu jdlabal@stanford.edu kjells@uw.edu markus.loning.17@ucl.ac.uk k_nzw@klis.tsukuba.ac.jp dkirkby@uci.edu balawson@bu.edu c.brummitt@columbia.edu choo8@illinois.edu giorgio.patrini@anu.edu.au shangwuy@andrew.cmu.edu rafael.possas@sydney.edu.au olsonran@msu.edu brian.mcfee@nyu.edu naj273@nyu.edu dgrusak@trinity.edu emd222@cornell.edu voth0@sewanee.edu trishnendu.dd2014@cs.iiests.ac.in apeng@berkeley.edu boucher@cs.umass.edu lunt@ctbp.ucsd.edu bakhbari@mgh.harvard.edu piraka@brandeis.edu neal.lathia@cl.cam.ac.uk razhoshia@post.bgu.ac.il michal.romaniuk06@ic.ac.uk m.batchkarov@sussex.ac.uk lemin@cs.colostate.edu rudvlf0413@korea.ac.kr vredev16@msu.edu raschkas@msu.edu ali.baharev@univie.ac.at a.krasoulis@sms.ed.ac.uk arokem@berkeley.edu gabrielvr@al.insper.edu.br eric.sanchez1234@email.bakersfieldcollege.edu fcchou@stanford.edu rofuyu@cs.utexas.edu glemaitre@visor.udg.edu naoyaiijima@hiroshima-u.ac.jp ayushgup@iitk.ac.in joel@vlan-2666-10-17-16-173.staff.wireless.sydney.edu.au jam7w2@mail.missouri.edu j.hale09@imperial.ac.uk tw991@nyu.edu patel_zeel@iitgn.ac.in vincent.lostanlen@nyu.edu stvjc@channing.harvard.edu ritchieng@u.nus.edu bansalsi@usc.edu rbarnes@umn.edu rrohan@cs.cmu.edu liutong.zhou@columbia.edu mdh386@nyu.edu mlf419@nyu.edu shreyave@usc.edu jin.siy@northeastern.edu samuel_ainsworth@brown.edu cwijes1@lsu.edu wadawson@ucdavis.edu xinyuliu@umich.edu rz258@cornell.edu daniel.mallia21@myhunter.cuny.edu argriffi@ncsu.edu filipj@umich.edu kms15@case.edu sam.dixon@berkeley.edu khong008@e.ntu.edu.sg jnelso11@gmu.edu jclawton@umich.edu jaehyunahn@sogang.ac.kr ijpulidos@unal.edu.co gstupp@scripps.edu justhube@umich.edu noamkeidar@campus.technion.ac.il nityamd@nyu.edu css459@nyu.edu alyee@ucsd.edu andersk@mit.edu dhanus@mit.edu coreylevinson@uchicago.edu cailean.carter@quadram.ac.uk bral4884@colorado.edu dschult@colgate.edu dpwe@ee.columbia.edu dylan.cashman@tufts.edu pawelsendyk@berkeley.edu qzhang90@gatech.edu mhaberla@calpoly.edu saketk@student.unimelb.edu.au eunjikim@dm.snu.ac.kr erinrhof@uw.edu ksivaman@purdue.edu garmstrong@ucsd.edu konstantin.shmelkov@polytechnique.edu e175774@ie.u-ryukyu.ac.jp hermidal@cs.umd.edu jbearer@hmc.edu jmarin@csail.mit.edu
Repository Activity:
Repository Owner: scikit-learn (organization)
Repositories related to the scikit-learn Python machine learning library. Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +2840 Educational commit emails
    142 contributors with educational email addresses
  • +20 Academic repository owner
    Repository owned by academic institution
  • +15 Institutional repository owner
    Repository owned by research institution
  • +6 Science terms in README
    3 scientific terms found in README
Penalties:
  • -10 PyPI ecosystem
    General-purpose ecosystem

Very Likely Science (100)

Papers Mentioning scikit-learn 2,431

10.3390/e22111198
FASTENER Feature Selection for Inference from Earth Observation Data
Cited by: 2
Author(s): Filip Koprivec, Klemen Kenda, Beno Šircelj
Software Mentions: 5
Published: almost 6 years ago
10.1038/s41598-021-87064-7
Predicting the clinical management of skin lesions using deep learning
Cited by: 16
Author(s): Kumar Abhishek, Jeremy Kawahara, Ghassan Hamarneh
Software Mentions: 5
Published: over 5 years ago
10.1186/s12920-019-0519-2
A systematic analysis of genomics-based modeling approaches for prediction of drug response to cytotoxic chemotherapies
Cited by: 7
Author(s): Joshua Mannheimer, Dawn L. Duval, Ashok Prasad, Daniel L. Gustafson
Software Mentions: 5
Published: about 7 years ago
10.1128/mSystems.00123-17
Machine Learning Leveraging Genomes from Metagenomes Identifies Influential Antibiotic Resistance Genes in the Infant Gut Microbiome
Cited by: 62
Author(s): Sumayah F. Rahman, Matthew R. Olm, Michael J. Morowitz, Jillian F. Banfield
Software Mentions: 5
Published: over 8 years ago
10.3389/fcell.2020.601145
Spontaneous Membrane Nanodomain Formation in the Absence or Presence of the Neurotransmitter Serotonin
Cited by: 11
Author(s): Anna Bochicchio, Astrid F. Brandner, Oskar Engberg, Daniel Huster, Rainer A. Böckmann
Software Mentions: 5
Published: almost 6 years ago
10.2196/24073
A Natural Language Processing–Based Virtual Patient Simulator and Intelligent Tutoring System for the Clinical Diagnostic Process: Simulator Development and Case Study
Cited by: 14
Author(s): Raffaello Furlan, Mauro Gatti, Roberto Menè, Dana Shiffer, Chiara Marchiori, Alessandro Giaj Levra, Vincenzo Saturnino, Enrico Brunetta, Franca Dipaola
Software Mentions: 5
Published: over 5 years ago
10.3389/frai.2021.680564
Topological Data Analysis Highlights Novel Geographical Signatures of the Human Gut Microbiome
Cited by: 3
Author(s): Eva Lymberopoulos, Giorgia Isabella Gentili, Muhannad Alomari, Nikhil Sharma
Software Mentions: 5
Published: about 5 years ago
10.3389/frai.2020.536086
Attitudes Toward Multilingualism in Luxembourg. A Comparative Analysis of Online News Comments and Crowdsourced Questionnaire Data
Cited by: 5
Author(s): Christoph Purschke
Software Mentions: 5
Published: almost 6 years ago
10.1186/s12859-020-03661-9
METROID: an automated method for robust quantification of subcellular fluorescence events at low SNR
Cited by: 0
Author(s): Marcelo Zoccoler, Pedro Xavier de Oliveira
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pcbi.1009021
MiMeNet: Exploring microbiome-metabolome relationships using neural networks
Cited by: 33
Author(s): Derek Reiman, Brian T. Layden, Yang Dai
Software Mentions: 5
Published: over 5 years ago
10.1038/s41598-020-74748-9
Dynamic changes in the brain protein interaction network correlates with progression of Aβ42 pathology in Drosophila
Cited by: 6
Author(s): Harry M. Scholes, Adam Cryar, Fiona Kerr, David Sutherland, Lee A. Gethings, Johannes P.C. Vissers, Jonathan G. Lees, Christine A. Orengo, Linda Partridge, Konstantinos Thalassinos
Software Mentions: 5
Published: almost 6 years ago
10.1038/s41598-020-67209-w
Laboratory culture of the California Sea Firefly Vargula tsujii (Ostracoda: Cypridinidae): Developing a model system for the evolution of marine bioluminescence
Cited by: 5
Author(s): Jessica A. Goodheart, Geetanjali Minsky, Mira N. Brynjegard-Bialik, Michael S. Drummond, Jacqueline Muñoz, Timothy R. Fallon, Darrin T. Schultz, Jing‐Ke Weng, Elizabeth Torres, Todd H. Oakley
Software Mentions: 5
Published: about 6 years ago
10.1242/dev.183855
Aging induces aberrant state transition kinetics in murine muscle stem cells
Cited by: 50
Author(s): Jacob C. Kimmel, Ara B. Hwang, Annarita Scaramozza, Wallace F. Marshall, Andrew S. Brack
Software Mentions: 5
Published: over 6 years ago
10.1186/s12864-020-6661-6
Analysis of heterogeneous genomic samples using image normalization and machine learning
Cited by: 3
Author(s): Sunitha Basodi, Pelin Icer Baykal, Alexander Zelikovsky, Pavel Skums, Yi Pan
Software Mentions: 5
Published: almost 6 years ago
10.1098/rstb.2020.0241
Phylogenetic signal in the vocalizations of vocal learning and vocal non-learning birds
Cited by: 10
Author(s): József Arató, W. Tecumseh Fitch
Software Mentions: 5
Published: about 5 years ago
10.3390/jcdd8040044
Predicting Long-Term Mortality in TAVI Patients Using Machine Learning Techniques
Cited by: 12
Author(s): Marco Penso, Mauro Pepi, Laura Fusini, Manuela Muratori, C. Claudia, Valentina Mantegazza, Paola Gripari, Sarah Ali, Franco Fabbiocchi, Antonio L. Bartorelli, Enrico G. Caiani, Gloria Tamborini
Software Mentions: 5
Published: over 5 years ago
10.1038/s41598-019-57198-w
Monitoring canid scent marking in space and time using a biologging and machine learning approach
Cited by: 8
Author(s): Owen R. Bidder, Agustina di Virgilio, J. F. Hunter, Alex McInturff, Kaitlyn M. Gaynor, Alison M. Smith, Janelle Dorcy, Frank Rosell
Software Mentions: 5
Published: over 6 years ago
10.7717/peerj-cs.533
AndroAnalyzer: android malicious software detection based on deep learning
Cited by: 13
Author(s): Recep Sinan Arslan
Software Mentions: 5
Published: over 5 years ago
10.1186/s13321-020-00420-z
COVER: conformational oversampling as data augmentation for molecules
Cited by: 19
Author(s): Jennifer Hemmerich, E. Asilar, Gerhard F. Ecker
Software Mentions: 5
Published: over 6 years ago
10.1016/j.compbiomed.2015.12.002
Rapid development of image analysis research tools: Bridging the gap between researcher and clinician with pyOsiriX
Cited by: 33
Author(s): Matthew Blackledge, David J. Collins, Dow‐Mu Koh, Martin O. Leach
Software Mentions: 5
Published: over 10 years ago
10.1186/s13321-021-00514-2
SANCDB: an update on South African natural compounds and their readily available analogs
Cited by: 22
Author(s): Bakary N'tji Diallo, Michael Glenister, Thommas M. Musyoka, Kevin A. Lobb, Özlem Tastan Bishop
Software Mentions: 5
Published: over 5 years ago
10.1186/1471-2164-15-76
Combinatorial epigenetic patterns as quantitative predictors of chromatin biology
Cited by: 16
Author(s): Marcin Cieślik, Stefan Bekiranov
Software Mentions: 5
Published: over 12 years ago
10.7717/peerj.9235
Bacterial communities associated with cell phones and shoes
Cited by: 5
Author(s): David A. Coil, Russell Y. Neches, Jenna M. Lang, Guillaume Jospin, Wendy E. Brown, Darlene Cavalier, Jarrad Hampton-Marcell, Jack A. Gilbert, Jonathan A. Eisen
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pone.0236827
Extraction of radiographic findings from unstructured thoracoabdominal computed tomography reports using convolutional neural network based natural language processing
Cited by: 12
Author(s): Mohit Pandey, Zhuoran Xu, Evan Sholle, Gabriel Maliakal, Gurpreet Singh, Zahra Fatima, Daria Larine, Benjamin C. Lee, Jing Wang, Alexander R. van Rosendael, Leslee J. Shaw, James K. Min, Subhi J. Al’Aref
Software Mentions: 5
Published: about 6 years ago
10.1186/s13321-017-0232-0
Beyond the hype: deep neural networks outperform established methods using a ChEMBL bioactivity benchmark set
Cited by: 207
Author(s): Eelke B. Lenselink, Niels ten Dijke, Brandon J. Bongers, George Papadatos, Herman van Vlijmen, Wojtek Kowalczyk, Adriaan P. IJzerman, Gerard J. P. van Westen
Software Mentions: 5
Published: about 9 years ago
10.7717/peerj.3035
BinSanity: unsupervised clustering of environmental microbial assemblies using coverage and affinity propagation
Cited by: 132
Author(s): Elaina D. Graham, John F. Heidelberg, Benjamin J. Tully
Software Mentions: 5
Published: over 9 years ago
10.7717/peerj.8871
Data-driven classification of the certainty of scholarly assertions
Cited by: 4
Author(s): Mario Prieto, Helena F. Deus, Anita de Waard, Erik Schultes, Beatriz García-Jiménez, Mark D. Wilkinson
Software Mentions: 5
Published: over 6 years ago
10.7717/peerj.6559
Estimating probabilistic context-free grammars for proteins using contact map constraints
Cited by: 7
Author(s): Witold Dyrka, Mateusz Pyzik, F Coste, Hugo Talibart
Software Mentions: 5
Published: over 7 years ago
10.7717/peerj.9654
Identification of DNA methylation patterns and biomarkers for clear-cell renal cell carcinoma by multi-omics data analysis
Cited by: 5
Author(s): Pengfei Liu, Weidong Tian
Software Mentions: 5
Published: about 6 years ago
10.1016/j.csbj.2021.05.028
Distinguishing between PTEN clinical phenotypes through mutation analysis
Cited by: 14
Author(s): Stephanie Portelli, Lucy Barr, Alex Guimarães Cardoso de Sá, Douglas E. V. Pires, David B. Ascher
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0201263
The mRNA cap methyltransferase gene TbCMT1 is not essential in vitro but is a virulence factor in vivo for bloodstream form Trypanosoma brucei
Cited by: 2
Author(s): Anna Kelner, Michele Tinti, Maria Lucia S. Güther, Bernardo J. Foth, Lia Chappell, Matthew Berriman, Victoria H. Cowling, Michael A. J. Ferguson
Software Mentions: 5
Published: about 8 years ago
10.3390/jcm9082603
Prediction of Adverse Events in Stable Non-Variceal Gastrointestinal Bleeding Using Machine Learning
Cited by: 8
Author(s): Dong-Woo Seo, Hahn Yi, Beomhee Park, Youn-Jung Kim, Dong Hwan Jung, Ilsang Woo, Chang Hwan Sohn, Byuk Sung Ko, Namkug Kim, Won Young Kim
Software Mentions: 5
Published: about 6 years ago
10.1155/2021/5522729
Prediction of COVID-19 with Computed Tomography Images using Hybrid Learning Techniques
Cited by: 13
Author(s): P. Varalakshmi, Vasumathi Narayanan, Sakthi Jaya Sundar Rajasekar
Software Mentions: 5
Published: over 5 years ago
10.1093/gigascience/gix111
ProphTools: general prioritization tools for heterogeneous biological networks
Cited by: 10
Author(s): Carmen Navarro, Víctor R. Martínez, Armando Blanco, Carlos Cano
Software Mentions: 5
Published: almost 9 years ago
10.1186/s12885-021-08645-3
Gene-associated methylation status of ST14 as a predictor of survival and hormone receptor positivity in breast Cancer
Cited by: 3
Author(s): Yang-Hong Dai, Ying-Fu Wang, Po-Chien Shen, Cheng‐Hsiang Lo, Juxiang Yang, Chun‐Shu Lin, Hsing‐Lung Chao, Weimin Huang
Software Mentions: 5
Published: about 5 years ago
10.1371/journal.pone.0144820
CloudForest: A Scalable and Efficient Random Forest Implementation for Biological Data
Cited by: 2
Author(s): Ryan Bressler, Richard Kreisberg, Brady Bernard, John E. Niederhuber, Joseph G. Vockley, Ilya Shmulevich, Theo Knijnenburg
Software Mentions: 5
Published: over 10 years ago
10.1038/s41598-020-69298-z
Standardization of brain MR images across machines and protocols: bridging the gap for MRI-based radiomics
Cited by: 121
Author(s): Alexandre Carré, G. Klausner, Myriam Edjlali, Marvin Lerousseau, Jade Briend-Diop, Roger Sun, Samy Ammari, Sylvain Reuzé, É. Alvarez Andres, Théo Estienne, S. Niyoteka, Enzo Battistella, Maria Vakalopoulou, Frédéric Dhermain, Nikos Paragios, Éric Deutsch, Catherine Oppenheim, Johan Pallud, Charlotte Robert
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pone.0246396
High SARS-CoV-2 load in the nasopharynx of patients with a mild form of COVID-19 is associated with clinical deterioration regardless of the hydroxychloroquine administration
Cited by: 4
Author(s): Alexey A. Komissarov, Ivan Molodtsov, O. Ivanova, Elena Maryukhnich, Svetlana S. Kudryavtseva, А. И. Мазус, E. L. Nikonov, Elena Vasilieva
Software Mentions: 5
Published: over 5 years ago
10.1186/s12859-020-3425-x
OffsampleAI: artificial intelligence approach to recognize off-sample mass spectrometry images
Cited by: 26
Author(s): Katja Ovchinnikova, Vitaly Kovalev, Lachlan Stuart, Theodore Alexandrov
Software Mentions: 5
Published: over 6 years ago
10.1186/s13059-021-02313-2
Schema: metric learning enables interpretable synthesis of heterogeneous single-cell modalities
Cited by: 19
Author(s): Rohit Singh, Brian Hie, Ashwin Narayan, Bonnie Berger
Software Mentions: 5
Published: over 5 years ago
10.1186/s13059-021-02452-6
Sfaira accelerates data and model reuse in single cell genomics
Cited by: 16
Author(s): David Fischer, Leander Dony, Martin König, Abdul Moeed, Luke Zappia, Lukas Heumos, Sophie Tritschler, Olle Holmberg, Hananeh Aliee, Fabian J. Theis
Software Mentions: 5
Published: about 5 years ago
10.1186/s13059-021-02296-0
2passtools: two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing
Cited by: 12
Author(s): Matthew T Parker, Katarzyna Knop, Geoffrey J. Barton, Gordon G. Simpson
Software Mentions: 5
Published: over 5 years ago
10.1186/s12916-021-01953-2
Deep learning-based six-type classifier for lung cancer and mimics from histopathological whole slide images: a retrospective study
Cited by: 50
Author(s): Huan Yang, Lili Chen, Zhiqiang Cheng, Mo Yang, Jianbo Wang, Cheng-Hao Lin, Yuefeng Wang, Leilei Huang, Yangshan Chen, Sui Peng, Zunfu Ke, Weizhong Li
Software Mentions: 5
Published: over 5 years ago
10.1186/s13059-020-01977-6
Avocado: a multi-scale deep tensor factorization method learns a latent representation of the human epigenome
Cited by: 67
Author(s): Jacob Schreiber, Timothy Durham, Jeffrey A. Bilmes, William Stafford Noble
Software Mentions: 5
Published: over 6 years ago
10.1186/s13059-019-1858-1
Evaluating nanopore sequencing data processing pipelines for structural variation identification
Cited by: 30
Author(s): Anbo Zhou, Timothy Lin, Jinchuan Xing
Software Mentions: 5
Published: almost 7 years ago
10.1186/s13059-017-1196-0
The within-host population dynamics of Mycobacterium tuberculosis vary with treatment efficacy
Cited by: 88
Author(s): Andrej Trauner, Qingyun Liu, Laura E. Via, Xin Liu, Xianglin Ruan, Lili Liang, Huimin Shi, Ying Chen, Ziling Wang, Ruixia Liang, Wei Zhang, Wei Wang, Jingcai Gao, Gang Sun, Daniela Brites, Kathleen England, Guolong Zhang, Sébastien Gagneux, Clifton E. Barry, Qian Gao
Software Mentions: 5
Published: over 9 years ago
10.1371/journal.pntd.0004549
Transforming Clinical Data into Actionable Prognosis Models: Machine-Learning Framework and Field-Deployable App to Predict Outcome of Ebola Patients
Cited by: 52
Author(s): Andrés Colubri, Thomas Silver, Terrence Fradet, Kalliroi Retzepi, Benjamin N. Fry, Pardis C. Sabeti
Software Mentions: 5
Published: over 10 years ago
10.1093/bioinformatics/btv593
Automatic generation of bioinformatics tools for predicting protein–ligand binding sites
Cited by: 12
Author(s): Yusuke Komiyama, Masaki Banno, Kokoro Ueki, Gul Saad, Kentaro Shimizu
Software Mentions: 5
Published: almost 11 years ago
10.3389/frma.2021.644614
PubMed-Scale Chemical Concept Embeddings Reconstruct Physical Protein Interaction Networks
Cited by: 0
Author(s): Blaž Škrlj, Enja Kokalj, Nada Lavrač
Software Mentions: 5
Published: over 5 years ago
10.3390/metabo11080488
Investigating Global Lipidome Alterations with the Lipid Network Explorer
Cited by: 17
Author(s): Nikolai Köhler, Tim Rose, Lisa Falk, Josch Pauling
Software Mentions: 5
Published: about 5 years ago
10.3390/nu13093289
Analyzing Type 2 Diabetes Associations with the Gut Microbiome in Individuals from Two Ethnic Backgrounds Living in the Same Geographic Area
Cited by: 13
Author(s): Manon Balvers, Mélanie Deschasaux, Bert‐Jan H. van den Born, Koos Zwinderman, Max Nieuwdorp, Evgeni Levin
Software Mentions: 5
Published: almost 5 years ago
10.3389/fpsyt.2016.00130
Development and Clinical Evaluation of an mHealth Application for Stress Management
Cited by: 26
Author(s): Brent Winslow, George L. Chadderdon, Sara Dechmerowski, David Jones, Solomon Kalkstein, Jennifer L. Greene, Philip Gehrman
Software Mentions: 5
Published: about 10 years ago
10.1371/journal.pcbi.1009316
A probabilistic model for the ultradian timing of REM sleep in mice
Cited by: 6
Author(s): Sung-Ho Park, Justin Baik, June Seok Hong, Hanna Antila, Benjamin Kurland, Shinjae Chung, Franz Weber
Software Mentions: 5
Published: about 5 years ago
10.1186/s40168-021-01056-3
Anna Karenina and the subgingival microbiome associated with periodontitis
Cited by: 15
Author(s): Khaled Altabtbaei, Pooja Maney, Sukirth M. Ganesan, Shareef M Dabdoub, Haikady N. Nagaraja, Purnima Kumar
Software Mentions: 5
Published: over 5 years ago
10.3389/fimmu.2018.02059
A Distinct Esophageal mRNA Pattern Identifies Eosinophilic Esophagitis Patients With Food Impactions
Cited by: 8
Author(s): Benjamin F. Sallis, Utkucan Acar, Kelsey Hawthorne, Stephen Babcock, Cynthia Kanagaratham, Jeffrey D. Goldsmith, Rachel Rosen, Jon A. Vanderhoof, Samuel Nurko, Edda Fiebiger
Software Mentions: 5
Published: almost 8 years ago
10.1186/s12918-018-0547-0
BTNET : boosted tree based gene regulatory network inference algorithm using time-course measurement data
Cited by: 30
Author(s): Sungjoon Park, Jung Min Kim, Weon Ho Shin, Sung Won Han, Minji Jeon, Hyun Jin Jang, Ik Soon Jang, Jaewoo Kang
Software Mentions: 5
Published: over 8 years ago
10.3390/ijerph18189912
Assessing Patient-Perceived Hospital Service Quality and Sentiment in Malaysian Public Hospitals Using Machine Learning and Facebook Reviews
Cited by: 12
Author(s): Afiq Izzudin A. Rahim, Mohd Ismail Ibrahim, Kamarul Imran Musa, Sook-Ling Chua, Najib Majdi Yaacob
Software Mentions: 5
Published: almost 5 years ago
10.3389/fimmu.2019.01716
Enhanced Immunomodulation in Inflammatory Environments Favors Human Cardiac Mesenchymal Stromal-Like Cells for Allogeneic Cell Therapies
Cited by: 3
Author(s): Falk Diedrichs, Meaghan Stolk, Karsten Jürchott, Marion Haag, Michael Sittinger, Martina Seifert
Software Mentions: 5
Published: about 7 years ago
10.1099/mgen.0.000500
Identifying novel β-lactamase substrate activity through in silico prediction of antimicrobial resistance
Cited by: 7
Author(s): Kara K. Tsang, Finlay Maguire, Haley L. Zubyk, Sommer Chou, Arman Edalatmand, Gerard D. Wright, Robert G. Beiko, Andrew G. McArthur
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pcbi.1005541
High-order epistasis shapes evolutionary trajectories
Cited by: 88
Author(s): Zachary Sailer, Michael J. Harms
Software Mentions: 5
Published: over 9 years ago
10.7554/eLife.69068
Reconciling functional differences in populations of neurons recorded with two-photon imaging and electrophysiology
Cited by: 26
Author(s): Joshua H. Siegle, Peter Ledochowitsch, Xiaoxuan Jia, Daniel Millman, Gabriel Koch Ocker, Shiella Caldejon, Linzy Casal, Andy Cho, Daniel J. Denman, Séverine Durand, Peter A. Groblewski, Gregg Heller, India Kato, Sara Kivikas, Jérôme Lecoq, Chelsea Nayan, Kiet Ngo, Philip R. Nicovich, Kat North, Tamina K Ramirez, Jackie Swapp, Xana Waughman, Ali Williford, Shawn R. Olsen, Christof Koch, Michael A. Buice, Saskia E. J. de Vries
Software Mentions: 5
Published: about 5 years ago
10.1186/s40360-018-0282-6
eToxPred: a machine learning-based approach to estimate the toxicity of drug candidates
Cited by: 77
Author(s): Limeng Pu, Misagh Naderi, Tairan Liu, Hsiao-Chun Wu, Supratik Mukhopadhyay, Michał Bryliński
Software Mentions: 4
Published: over 7 years ago
10.1107/S2052252520000895
The predictive power of data-processing statistics
Cited by: 6
Author(s): M. Vollmar, James M. Parkhurst, Dominic Jaques, Arnaud Baslé, Garib N. Murshudov, David Waterman, Gwyndaf Evans
Software Mentions: 4
Published: over 6 years ago
10.1107/S2052252520008830
Machine learning deciphers structural features of RNA duplexes measured with solution X-ray scattering
Cited by: 11
Author(s): Yen-Lin Chen, Lois Pollack
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.pcbi.1006520
Molecular characterization of breast and lung tumors by integration of multiple data types with functional sparse-factor analysis
Cited by: 13
Author(s): Tycho Bismeijer, Sander Canisius, Lodewyk Wessels
Software Mentions: 4
Published: almost 8 years ago
10.1155/2021/6668985
Deep Learning Approach for Discovery of In Silico Drugs for Combating COVID-19
Cited by: 20
Author(s): Nishant Jha, Deepak Prashar, Mamoon Rashid, Mohammad Shafiq, Razaullah Khan, Catalin I. Pruncu, Shams Tabrez Siddiqui, Manindra Kumar
Software Mentions: 4
Published: about 5 years ago
10.1186/s12866-018-1341-2
The murine vaginal microbiota and its perturbation by the human pathogen group B Streptococcus
Cited by: 46
Author(s): Alison Vrbanac, Angelica M. Riestra, Alison Coady, Rob Knight, Victor Nizet, Kathryn A. Patras
Software Mentions: 4
Published: almost 8 years ago
10.1371/journal.pcbi.1008347
Integrating across neuroimaging modalities boosts prediction accuracy of cognitive ability
Cited by: 30
Author(s): Javier Rasero, A. Sentis, Fang‐Cheng Yeh, Timothy Verstynen
Software Mentions: 4
Published: over 5 years ago
10.1186/s12874-020-01046-3
Don’t dismiss logistic regression: the case for sensible extraction of interactions in the era of machine learning
Cited by: 33
Author(s): Joshua Levy, A. James O’Malley
Software Mentions: 4
Published: about 6 years ago
10.2196/19069
Multidimensional Machine Learning Personalized Prognostic Model in an Early Invasive Breast Cancer Population-Based Cohort in China: Algorithm Validation Study
Cited by: 8
Author(s): Xiaorong Zhong, Ting Luo, Ling Deng, Pei Liu, Kejia Hu, Donghao Lü, Dan Zheng, Chunying Luo, Yuxin Xie, Jiayuan Li, Ping He, Tianjie Pu, Feng Ye, Hong Bu, Bo Fu, Hong Zheng
Software Mentions: 4
Published: almost 6 years ago
10.1186/s12859-020-3427-8
Standard machine learning approaches outperform deep representation learning on phenotype prediction from transcriptomics data
Cited by: 33
Author(s): Aaron Smith, Jonathan R. Walsh, John M. Long, Craig B. Davis, Peter V. Henstock, Martin R. Hodge, Mateusz Maciejewski, Xinmeng Jasmine Mu, Stephen Ra, Shanrong Zhao, Daniel Ziemek, Charles K. Fisher
Software Mentions: 4
Published: over 6 years ago
10.1186/s12911-020-01331-7
An interpretable risk prediction model for healthcare with pattern attention
Cited by: 6
Author(s): Sundreen Asad Kamal, Changchang Yin, Buyue Qian, Ping Zhang
Software Mentions: 4
Published: almost 6 years ago
10.1371/journal.pcbi.1008001
Longitudinal wastewater sampling in buildings reveals temporal dynamics of metabolites
Cited by: 2
Author(s): Ethan D. Evans, Dai Cl, Siavash Isazadeh, Shinkyu Park, Carlo Ratti, Eric J. Alm
Software Mentions: 4
Published: about 6 years ago
10.3389/fgene.2021.648329
Deep Learning Reveals Key Immunosuppression Genes and Distinct Immunotypes in Periodontitis
Cited by: 10
Author(s): Wanchen Ning, Aneesha Acharya, Zhenjie Sun, Anthony Chukwunonso Ogbuehi, Cong Liu, Shiting Hua, Qiyun Ou, Muhui Zeng, Xiangqiong Liu, Yupei Deng, Rainer Haak, Dirk Ziebolz, Gerhard Schmalz, George Pelekos, Yan Wang, Xianda Hu
Software Mentions: 4
Published: over 5 years ago
10.1186/s12859-019-3076-y
DeepEP: a deep learning framework for identifying essential proteins
Cited by: 36
Author(s): Min Zeng, Min Li, Fang‐Xiang Wu, Yaohang Li, Yi Pan
Software Mentions: 4
Published: almost 7 years ago
10.3389/fgene.2020.618478
ATACgraph: Profiling Genome-Wide Chromatin Accessibility From ATAC-seq
Cited by: 7
Author(s): Rita Jui-Hsien Lu, Yen-Ting Liu, Chih-Wei Huang, Ming‐Ren Yen, Chung‐Yen Lin, Pao‐Yang Chen
Software Mentions: 4
Published: over 5 years ago
10.1128/mSystems.00960-20
Human Gene Functional Network-Informed Prediction of HIV-1 Host Dependency Factors
Cited by: 3
Author(s): Chen Fu, Shiping Yang, Xiaodi Yang, Xianyi Lian, Yan Huang, Xiaobao Dong, Ziding Zhang
Software Mentions: 4
Published: over 5 years ago
10.1186/s40246-021-00357-w
Evaluation of low-pass genome sequencing in polygenic risk score calculation for Parkinson’s disease
Cited by: 2
Author(s): Sung-Jae Kim, Jong-Yeon Shin, Nak‐Jung Kwon, Chang-Uk Kim, Changhoon Kim, Chong Sik Lee, Jeong‐Sun Seo
Software Mentions: 4
Published: about 5 years ago
10.2196/17364
Predicting Breast Cancer in Chinese Women Using Machine Learning Techniques: Algorithm Development
Cited by: 25
Author(s): Can Hou, Xiaorong Zhong, Ping He, Bin Xu, Sha Diao, Yi Fang, Hong Zheng, Jiayuan Li
Software Mentions: 4
Published: over 6 years ago
10.1186/s12859-021-04147-y
Systematic interrogation of mutation groupings reveals divergent downstream expression programs within key cancer genes
Cited by: 1
Author(s): Michal R. Grzadkowski, Hannah D. Holly, Julia Somers, Emek Demir
Software Mentions: 4
Published: over 5 years ago
10.1186/s12911-018-0679-6
A decision support system to follow up and diagnose primary headache patients using semantically enriched data
Cited by: 20
Author(s): Gilles Vandewiele, Femke De Backere, Kiani Lannoye, Maarten Vanden Berghe, Olivier Janssens, Sofie Van Hoecke, Vincent Keereman, Koen Paemeleire, Femke Ongenae, Filip De Turck
Software Mentions: 4
Published: almost 8 years ago
10.3389/fncom.2018.00056
Modern Machine Learning as a Benchmark for Fitting Neural Responses
Cited by: 52
Author(s): Ari S. Benjamin, Hugo L. Fernandes, Tucker Tomlinson, Pavan Ramkumar, Chris VerSteeg, Raeed H. Chowdhury, Lee E. Miller, Konrad Kording
Software Mentions: 4
Published: about 8 years ago
10.3389/fncom.2020.580632
DNNBrain: A Unifying Toolbox for Mapping Deep Neural Networks and Brains
Cited by: 11
Author(s): Xiayu Chen, Ming Zhou, Zhengxin Gong, Wei Xu, Xingyu Liu, Taicheng Huang, Zonglei Zhen, Jia Liu
Software Mentions: 4
Published: almost 6 years ago
10.1186/s12911-016-0306-3
Temporal bone radiology report classification using open source machine learning and natural langue processing libraries
Cited by: 15
Author(s): Aaron J. Masino, Robert W. Grundmeier, Jeffrey W. Pennington, John A. Germiller, E. Bryan Crenshaw
Software Mentions: 4
Published: over 10 years ago
10.1186/s12911-019-0805-0
Identifying clinically important COPD sub-types using data-driven approaches in primary care population based electronic health records
Cited by: 54
Author(s): Maria Pikoula, Jennifer K Quint, Francis Nissen, Harry Hemingway, Liam Smeeth, Spiros Denaxas
Software Mentions: 4
Published: over 7 years ago
10.3389/fgene.2019.01182
Graph Embedding Deep Learning Guides Microbial Biomarkers' Identification
Cited by: 19
Author(s): Qiang Zhu, Xingpeng Jiang, Qing Zhu, Min Pan, Tingting He
Software Mentions: 4
Published: almost 7 years ago
10.3389/fncel.2021.668230
Impaired Adaptation and Laminar Processing of the Oddball Paradigm in the Primary Visual Cortex of Fmr1 KO Mouse
Cited by: 4
Author(s): Alexandr Pak, Samuel T. Kissinger, Alexander A. Chubykin
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.pcbi.1007348
Learning unsupervised feature representations for single cell microscopy images with paired cell inpainting
Cited by: 64
Author(s): Alex X. Lu, Oren Kraus, Sam Cooper, Alan M. Moses
Software Mentions: 4
Published: about 7 years ago
10.1186/s12859-020-03682-4
NEDD: a network embedding based method for predicting drug-disease associations
Cited by: 22
Author(s): Renyi Zhou, Zhangli Lu, Huimin Luo, Xu Ju, Min Zeng, Min Li
Software Mentions: 4
Published: about 6 years ago
10.3389/fcimb.2021.663068
Taxonomic and Functional Dysregulation in Salivary Microbiomes During Oral Carcinogenesis
Cited by: 7
Author(s): Jiung Wen Chen, Jer Horng Wu, Wei Fan Chiang, Yuh Ling Chen, Wei Wu, Li-Wha Wu
Software Mentions: 4
Published: almost 5 years ago
10.1371/journal.pcbi.1008219
A simple, scalable approach to building a cross-platform transcriptome atlas
Cited by: 12
Author(s): Paul W. Angel, Nadia Rajab, Yidi Deng, Chris M. Pacheco, Tyrone Chen, Kim‐Anh Lê Cao, Jarny Choi, Christine A. Wells
Software Mentions: 4
Published: almost 6 years ago
10.3389/fgene.2020.00513
Estimating Conformational Traits in Dairy Cattle With DeepAPS: A Two-Step Deep Learning Automated Phenotyping and Segmentation Approach
Cited by: 13
Author(s): Jessica Nye, Laura M. Zingaretti, Miguel Pérez‐Enciso
Software Mentions: 4
Published: over 6 years ago
10.1128/mSystems.00211-19
Identification of Primary Antimicrobial Resistance Drivers in Agricultural Nontyphoidal Salmonella enterica Serovars by Using Machine Learning
Cited by: 16
Author(s): Finlay Maguire, Muhammad Attiq Rehman, Catherine D. Carrillo, Moussa S. Diarra, Robert G. Beiko
Software Mentions: 4
Published: about 7 years ago
10.1186/s12859-018-2029-1
Deep learning of mutation-gene-drug relations from the literature
Cited by: 36
Author(s): Kyubum Lee, Byounggun Kim, Yong-Hwa Choi, Sunkyu Kim, Weon Ho Shin, Sunwon Lee, Sungjoon Park, Seongsoon Kim, Aik Choon Tan, Jaewoo Kang
Software Mentions: 4
Published: over 8 years ago
10.3389/fbioe.2020.00959
What Has Been Trending in the Research of Polyhydroxyalkanoates? A Systematic Review
Cited by: 25
Author(s): Maciej Guzik, Tomasz Witko, Alexander Steinbüchel, Magdalena Wojnarowska, Mariusz Sołtysik, Sławomir Wawak
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.pcbi.1008377
Active probing to highlight approaching transitions to ictal states in coupled neural mass models
Cited by: 2
Author(s): Vinícius Rezende Carvalho, Márcio Flávio Dutra Moraes, Sydney S. Cash, Eduardo M. A. M. Mendes
Software Mentions: 4
Published: over 5 years ago
10.12688/f1000research.52350.2
RNAmining: A machine learning stand-alone and web server tool for RNA coding potential prediction
Cited by: 6
Author(s): Thaís Ramos, Nilbson R. O. Galindo, Raúl Arias‐Carrasco, Cecília F. da Silva, Vinícius Maracaja-Coutinho, Thaís Gaudêncio do Rêgo
Software Mentions: 4
Published: over 5 years ago
10.1093/scan/nsaa141
HyPyP: a Hyperscanning Python Pipeline for inter-brain connectivity analysis
Cited by: 38
Author(s): Anaël Ayrolles, Florence Brun, Yi‐Ping Phoebe Chen, Amir Djalovski, Yann Beauxis, Richard Delorme, Thomas Bourgeron, Suzanne Dikker, Guillaume Dumas
Software Mentions: 4
Published: almost 6 years ago
10.7150/thno.55676
A panel of selected serum protein biomarkers for the detection of aggressive prostate cancer
Cited by: 12
Author(s): Jin Song, Shiyong Ma, Lori J. Sokoll, Rodrigo Vargas Eguez, Naseruddin Höti, Hui Zhang, Phaedre Mohr, Renu Dua, Dattatraya Patil, Kristen Douglas May, Sierra Williams, Rebecca S. Arnold, Martin G. Sanda, Daniel W. Chan, Zhen Zhang
Software Mentions: 4
Published: over 5 years ago
10.3390/s21124172
Uplink vs. Downlink: Machine Learning-Based Quality Prediction for HTTP Adaptive Video Streaming
Cited by: 7
Author(s): Frank Loh, Fabian Poignée, Florian Wamser, Ferdinand Leidinger, Tobias Hoßfeld
Software Mentions: 4
Published: about 5 years ago