Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: package

https://packages.ecosyste.ms/registries/pypi.org/packages/package

package is a package to package your package
1 version
Latest release: over 13 years ago
7,219 downloads last month

Papers Mentioning package 1,300

10.1371/journal.pone.0015827
Discovering Conformational Sub-States Relevant to Protein Function
Cited by: 64
Author(s): Arvind Ramanathan, Andrej J. Savol, Christopher J. Langmead, Pratul K. Agarwal, Chakra Chennubhotla
Software Mentions: 1
Published: almost 14 years ago
10.1371/journal.pone.0112592
Predictive Value of Interferon-Lambda Gene Polymorphisms for Treatment Response in Chronic Hepatitis C
Cited by: 20
Author(s): S. Süsser, Eva Herrmann, Christian Lange, Nabila Hamdi, Tobias Müller, Thomas Berg, D. Perner, Stefan Zeuzem, Christoph Sarrazin
Software Mentions: 1
Published: about 10 years ago
10.1186/s12864-016-3338-2
Carbohydrate metabolism in Oenococcus oeni: a genomic insight
Cited by: 17
Author(s): Alice Cibrario, Claire Peanne, Marine Lailheugue, Hugo Campbell-Sills, Marguerite Dols‐Lafargue
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pone.0011626
Probabilistic Daily ILI Syndromic Surveillance with a Spatio-Temporal Bayesian Hierarchical Model
Cited by: 21
Author(s): Ta‐Chien Chan, Chwan-Chuen King, Muh–Yong Yen, Po‐Hui Chiang, Chien-Sheng Huang, Chuhsing Kate Hsiao
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0184400
Sources of pain in laparoendoscopic gynecological surgeons: An analysis of ergonomic factors and proposal of an aid to improve comfort
Cited by: 7
Author(s): Sa Ra Lee, Sunah Shim, Taeri Yu, Kyoung Sook Jeong, Hye Won Chung
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0057953
Spatiotemporal Dynamics of Early DNA Damage Response Proteins on Complex DNA Lesions
Cited by: 37
Author(s): Frank Tobias, Daniel Löb, Nicor Lengert, Marco Durante, Barbara Drossel, G. Taucher-Scholz, Burkhard Jakob
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0044397
Genetical Genomics Identifies the Genetic Architecture for Growth and Weevil Resistance in Spruce
Cited by: 23
Author(s): Ilga Porth, Richard Allen White, Barry Jaquish, René I. Alfaro, Carol Ritland, Kermit Ritland
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0114180
Deciphering the Prokaryotic Community and Metabolisms in South African Deep-Mine Biofilms through Antibody Microarrays and Graph Theory
Cited by: 22
Author(s): Yolanda Blanco, Luis A. Rivas, Antonio García-Moyano, Jacobo Aguirre, Patricia Cruz-Gil, Arantxa Palacín, Esta van Heerden, Vı́ctor Parro
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pone.0059487
Disparities in Outcomes following Admission for Cholangitis
Cited by: 9
Author(s): Julia McNabb‐Baltar, Quoc‐Dien Trinh, Alan N. Barkun
Software Mentions: 1
Published: over 11 years ago
10.1101/2021.02.05.21251235
Emergence of an early SARS-CoV-2 epidemic in the United States
Cited by: 5
Author(s): Mark Zeller, Karthik Gangavarapu, Catelyn Anderson, Allison R. Smither, John A. Vanchiere, Rebecca Rose, Gytis Dudas, Donald R. Snyder, Alexander Watts, Nathaniel L. Matteson, Refugio Robles‐Sikisaka, Maximilian Marshall, Amy K. Feehan, Gilberto Sabino‐Santos, Antoinette R. Bell-Kareem, Laura D. Hughes, Manar Alkuzweny, Patricia Snarski, Julia Garcia‐Diaz, Rona S. Scott, Lilia I. Melnik, Raphaëlle Klitting, Michelle McGraw, Pedro Belda-Ferre, Peter DeHoff, Shashank Sathe, Clarisse Marotz, Nathan D. Grubaugh, David J. Nolan, Arnaud Drouin, Kaylynn J. Genemaras, Karissa Chao, Sarah E. Topol, Emily Spencer, Laura Nicholson, Stefan Aigner, G Yeo, Lauge Farnaes, Charlotte A. Hobbs, Louise C. Laurent, Rob Knight, Emma B. Hodcroft, Kamran Khan, Dahlene N. Fusco, Vaughn S. Cooper, Phillipe Lemey, Lauren Gardner, Susanna L. Lamers, Jeremy P. Kamil, Robert F. Garry, Marc A. Suchard, Kristian G. Andersen
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0083720
QTL Map Meets Population Genomics: An Application to Rice
Cited by: 9
Author(s): Jeffrey A. Fawcett, Tomoyuki Kado, Eriko Sasaki, Shohei Takuno, Kentaro Yoshida, Ryuichi P. Sugino, Shunichi Kosugi, Satoshi Natsume, Chikako Mitsuoka, Aiko Uemura, Hiroki Takagi, Akira Abe, Takashige Ishii, Hideki Innan
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0044043
Cost per QALY (Quality-Adjusted Life Year) and Lifetime Cost of Prolonged Mechanical Ventilation in Taiwan
Cited by: 21
Author(s): Mei Hung, Hsin Ming Lu, Likwang Chen, Mingxiang Lin, Cheng Ren Chen, Chong‐Jen Yu, Jung‐Der Wang
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0062233
DNA Methylation Profile Distinguishes Clear Cell Sarcoma of the Kidney from Other Pediatric Renal Tumors
Cited by: 21
Author(s): Hikaru Ueno, Hajime Okita, Shingo Akimoto, Kenichiro Kobayashi, Kazuhiko Nakabayashi, Kenichiro Hata, Junichiro Fujimoto, Jun Ichi Hata, Masahiro Fukuzawa, Nobutaka Kiyokawa
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0017622
Wild Bird Migration across the Qinghai-Tibetan Plateau: A Transmission Route for Highly Pathogenic H5N1
Cited by: 98
Author(s): Diann J. Prosser, Peng Cui, John Y. Takekawa, Mingjie Tang, Yuansheng Hou, Bridget M. Collins, Binbin Yan, Nichola J. Hill, Tianxian Li, Yongdong Li, Fumin Lei, Shan Guo, Xiefei Zhi, Yong He, Yuanchun Zhou, David C. Douglas, William M. Perry, Scott H. Newman
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pone.0095413
Overrepresentation of Glutamate Signaling in Alzheimer's Disease: Network-Based Pathway Enrichment Using Meta-Analysis of Genome-Wide Association Studies
Cited by: 48
Author(s): Eduardo Pérez‐Palma, Bernabé I. Bustos, Camilo Villamán, Marcelo Alarcón, Miguel E. Ávila, Giorgia D. Ugarte, Ariel E. Reyes, Carlos Opazo, Giancarlo V. De Ferrari
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0104241
Population Genomics of the Fission Yeast Schizosaccharomyces pombe
Cited by: 44
Author(s): Jeffrey A. Fawcett, Tetsushi Iida, Shohei Takuno, Ryuichi P. Sugino, Tomoyuki Kado, Kazuto Kugou, Sachiko Mura, Takehiko Kobayashi, Kunihiro Ohta, Jun‐ichi Nakayama, Hideki Innan
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0176951
Surface reflectance drives nest box temperature profiles and thermal suitability for target wildlife
Cited by: 34
Author(s): Stephen R. Griffiths, Jessica A. Rowland, Natalie J. Briscoe, Pia E. Lentini, Kathrine A. Handasyde, Linda F. Lumsden, Kylie A. Robert
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0011635
Predators Reduce Extinction Risk in Noisy Metapopulations
Cited by: 3
Author(s): James C. Bull, Michael B. Bonsall
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0162552
Impact of Resident Rotations on Critically Ill Patient Outcomes: Results of a French Multicenter Observational Study
Cited by: 3
Author(s): Benjamin Chousterman, Romain Pirracchio, Bertrand Guidet, Philippe Aegerter, Hervé Mentec
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0233397
Geographical variations in cancer mortality and social inequalities in southern Spain (Andalusia). 2002-2013
Cited by: 10
Author(s): Vanessa Santos-Sánchez, Juan Antonio Córdoba-Doña, Francisco Viciana, Antonio Escolar-Pujolar, Lucia Pozzi, Rebeca Ramis
Software Mentions: 1
Published: over 4 years ago
10.1101/2021.05.13.21257065
A common allele of HLA mediates asymptomatic SARS-CoV-2 infection
Cited by: 5
Author(s): Danillo G. Augusto, Tasneem Yusufali, Noah D. Peyser, Xochitl Butcher, Gregory M. Marcus, Jeffrey E. Olgin, Mark J. Pletcher, Martin Maiers, Jill A. Hollenbach
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0071916
Taxonomic and Life History Bias in Herbicide Resistant Weeds: Implications for Deployment of Resistant Crops
Cited by: 26
Author(s): Jodie S. Holt, Shana R. Welles, Katia Silvera, Ian Heap, Sylvia M. Heredia, Alejandra Martínez‐Berdeja, Kai T. Palenscar, Lynn C. Sweet, Norman C. Ellstrand
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0161306
A Cytokine Signalling Network for the Regulation of Inducible Nitric Oxide Synthase Expression in Rheumatoid Arthritis
Cited by: 59
Author(s): Poulami Dey, Venugopal Panga, Srivatsan Raghunathan
Software Mentions: 1
Published: about 8 years ago
10.1186/s13613-021-00863-z
Role of sleep on respiratory failure after extubation in the ICU
Cited by: 8
Author(s): Arnaud W. Thille, Stéphanie Barrau, C. Beuvon, Damien Marié, Faustine Reynaud, J. L. Bardin, Adrien Pépin-Lehalleur, Vanessa Bironneau, J.-C. Meurice, Rémi Coudroy, Jean‐Pierre Frat, René Robert, Christophe Rault, Xavier Drouot
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0059551
Risk of Cardiovascular Disease from Antiretroviral Therapy for HIV: A Systematic Review
Cited by: 175
Author(s): Clay Bavinger, Eran Bendavid, Katherine E. Niehaus, Richard A. Olshen, Ingram Olkin, Vandana Sundaram, Nicole Wein, Mark Holodniy, Nanjiang Hou, Douglas K Owens, Manisha Desai
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0194889
Statistical and Machine Learning forecasting methods: Concerns and ways forward
Cited by: 721
Author(s): Spyros Makridakis, Evangelos Spiliotis, Vassilios Assimakopoulos
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0172133
Genetic architecture of cold tolerance in rice (Oryza sativa) determined through high resolution genome-wide analysis
Cited by: 96
Author(s): Ehsan Shakiba, Jeremy D. Edwards, F. Jodari, Sara E. Duke, Angela M. Baldo, Pavel Korniliev, Susan R. McCouch, G. C. Eizenga
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0041528
Advanced Methylome Analysis after Bisulfite Deep Sequencing: An Example in Arabidopsis
Cited by: 19
Author(s): Huy Q. Dinh, Manu Dubin, Fritz J. Sedlazeck, Nicole Lettner, Ortrun Mittelsten Scheid, Arndt von Haeseler
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0247394
IL-6 promotes MYC-induced B cell lymphomagenesis independent of STAT3
Cited by: 2
Author(s): Oleksi Petrenko, Jinyu Li, Velasco Cimica, Patricio Mena-Taboada, Ha Youn Shin, Stephen D’Amico, Nancy C. Reich
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0195587
Microalgal photophysiology and macronutrient distribution in summer sea ice in the Amundsen and Ross Seas, Antarctica
Cited by: 10
Author(s): Anders Torstensson, Agneta Fransson, Kim Currie, Angela Wulff, Melissa Chierici
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0040744
Testing for the Effects and Consequences of Mid Paleogene Climate Change on Insect Herbivory
Cited by: 53
Author(s): Torsten Wappler, Conrad C. Labandeira, Jes Rust, Herbert Frankenhäuser, Volker Wilde
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0097562
Genetic Diversity of Circulating Rotavirus Strains in Tanzania Prior to the Introduction of Vaccination
Cited by: 35
Author(s): Sabrina John Moyo, Bjørn Blomberg, Kurt Hanevik, Øyvind Kommedal, M Kirsti Vainio, Samuel Y Maselle, Nina Langeland
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0031910
Genetic Dissection of the Canq1 Locus Governing Variation in Extent of the Collateral Circulation
Cited by: 48
Author(s): Shiliang Wang, Hua Zhang, Tim Wiltshire, Robert Sealock, James E. Faber
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0181135
The association between ethnicity and vaginal microbiota composition in Amsterdam, the Netherlands
Cited by: 113
Author(s): Hanneke Borgdorff, Charlotte van der Veer, Robin van Houdt, Catharina J. Alberts, Henry Jc de Vries, Sylvia M. Bruisten, Marieke B. Snijder, Maria Prins, Suzanne E. Geerlings, Maarten F. Schim van der Loeff, Janneke van de Wijgert
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0216390
Recent changes in women’s Olympic shooting and effects in performance
Cited by: 16
Author(s): Daniel Mon‐López, Carlos Ma Tejero-González, Santiago Calero
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0170778
Skin Autofluorescence and Subclinical Atherosclerosis in Mild to Moderate Chronic Kidney Disease: A Case-Control Study
Cited by: 13
Author(s): Enric Sánchez, Àngels Betriu, David Arroyo, Carolina Martínez López, Marta Hernández, Ferrán Rius, Elvira Fernández, Albert Lecube
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pone.0207878
Periods of high dengue transmission defined by rainfall do not impact efficacy of dengue vaccine in regions of endemic disease
Cited by: 4
Author(s): Chloé Pasin, M. Elizabeth Halloran, Peter B. Gilbert, Edith Langevin, R. Leon Ochiai, Punnee Pitisuttithum, María Rosario Capeding, Gabriel Carrasquilla, Carina Frago, Margarita Cortés, Laurent Chambonneau, Zoe Moodie
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0041361
Differential DNA Methylation in Purified Human Blood Cells: Implications for Cell Lineage and Studies on Disease Susceptibility
Cited by: 857
Author(s): Lovisa E. Reinius, Nathalie Acevedo, Maaike Joerink, Göran Pershagen, Sven-Erik Dahlén, Dario Greco, Cilla Söderhäll, Annika Scheynius, Juha Kere
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0075880
Deployment and Post-Deployment Experiences in OEF/OIF Veterans: Relationship to Gray Matter Volume
Cited by: 14
Author(s): Robin L. Aupperle, Colm G. Connolly, Ashley N. Stillman, April C. May, Martin P. Paulus
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0032890
Evidence for a Trade-Off Strategy in Stone Oak (Lithocarpus) Seeds between Physical and Chemical Defense Highlights Fiber as an Important Antifeedant
Cited by: 28
Author(s): Xi Chen, Charles H. Cannon, Nancy Lou Conklin-Brittan
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0239333
Effect of smoking on tuberculosis treatment outcomes: A systematic review and meta-analysis
Cited by: 26
Author(s): Abay Burusie, Fikre Enquesilassie, Adamu Addissie, Berhe Dessalegn, Tafesse Lamaro
Software Mentions: 1
Published: about 4 years ago
10.1371/journal.pone.0088374
Phenotypic Microarrays Suggest Escherichia coli ST131 Is Not a Metabolically Distinct Lineage of Extra-Intestinal Pathogenic E. coli
Cited by: 21
Author(s): Abdulaziz Alqasim, Richard D. Emes, Gemma Clark, Jane Newcombe, Roberto M. La Ragione, Alan McNally
Software Mentions: 1
Published: almost 11 years ago
10.1371/journal.pone.0017040
An Updated Algorithm for the Generation of Neutral Landscapes by Spectral Synthesis
Cited by: 21
Author(s): Joseph D. Chipperfield, Calvin Dytham, Thomas Hovestadt
Software Mentions: 1
Published: almost 14 years ago
10.1111/apha.13532
Proliferation does not contribute to murine models of renin cell recruitment
Cited by: 11
Author(s): Omar Guessoum, Momna Zainab, Maria Luisa S. Sequeira-Lόpez, R. Ariel Gomez
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0185005
Molecular population genetics of the Polycomb genes in Drosophila subobscura
Cited by: 0
Author(s): Juan M. Calvo-Martín, Montserrat Papaceit, Carmen Segarra
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0070903
Genome-Wide Association Study Identifies a Novel Canine Glaucoma Locus
Cited by: 23
Author(s): Saija Ahonen, Elina Maria Pietilä, Cathryn S. Mellersh, Katriina Tiira, Liz Hansen, Gary S. Johnson, Hannes Lohi
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0042855
Generation of Induced Pluripotent Stem Cells from Human Nasal Epithelial Cells Using a Sendai Virus Vector
Cited by: 45
Author(s): Manabu Ono, Yuko Hamada, Yasue Horiuchi, Mami Matsuo-Takasaki, Yoshimasa Imoto, Kaishi Satomi, Tadao Arinami, Mamoru Hasegawa, Tsuyoshi Fujioka, Yukio Nakamura, Emiko Noguchi
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0051419
P3b Reflects Periodicity in Linguistic Sequences
Cited by: 13
Author(s): Sascha Otterbein, Cornelius Abel, Linda V. Heinemann, Jochen Kaiser, Maren Schmidt-Kassow
Software Mentions: 1
Published: almost 12 years ago
10.1038/ismej.2016.47
Genetic and life-history traits associated with the distribution of prophages in bacteria
Cited by: 268
Author(s): Marie Touchon, Aude Bernheim, Eduardo P. C. Rocha
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0217813
Characterization of bovine (Bos taurus) imprinted genes from genomic to amino acid attributes by data mining approaches
Cited by: 5
Author(s): Keyvan Karami, Saeed Zerehdaran, Ali Javadmanesh, Mohammad Mahdi Shariati, Hossein Fallahi
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0008695
Magnitude of Stratification in Human Populations and Impacts on Genome Wide Association Studies
Cited by: 13
Author(s): Ke-Ke Hao, Eugene Chudin, Danielle M. Greenawalt, Eric E. Schadt
Software Mentions: 1
Published: almost 15 years ago
10.1371/journal.pone.0089860
A Data-Driven Algorithm Integrating Clinical and Laboratory Features for the Diagnosis and Prognosis of Necrotizing Enterocolitis
Cited by: 40
Author(s): Jun Ji, Xuefeng B. Ling, Yue Zhao, Zhongkai Hu, Xiaolin Zheng, Zhening Xu, Qiaojun Wen, Zachary J. Kastenberg, Ping Li, Fizan Abdullah, Mary L. Brandt, Richard A. Ehrenkranz, Mary Catherine Harris, Timothy C. Lee, B. Joyce Simpson, Corinna Bowers, Richard L. Moss, Karl G. Sylvester
Software Mentions: 1
Published: over 10 years ago
10.1186/s13613-016-0202-0
Increased mortality in hematological malignancy patients with acute respiratory failure from undetermined etiology: a Groupe de Recherche en Réanimation Respiratoire en Onco-Hématologie (Grrr-OH) study
Cited by: 60
Author(s): Adrien Contejean, Virginie Lemiale, Matthieu Resche‐Rigon, Djamel Mokart, Frédéric Pène, Achille Kouatchet, Julien Mayaux, François Vincent, Martine Nyunga, Fabrice Bruneel, Antoine Rabbat, Pierre Perez, Anne-Pascale Meert, Dominique Benoît, Rébecca Hamidfar, Michaël Darmon, M. Jourdain, Anne Renault, Benoı̂t Schlemmer, Élie Azoulay
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0070509
Identification of a Novel Bacterial Outer Membrane Interleukin-1Β-Binding Protein from Aggregatibacter actinomycetemcomitans
Cited by: 22
Author(s): Annamari Paino, Tuuli Ahlstrand, Jari Nuutila, Indre Navickaite, Maria Lahti, Heidi Tuominen, Hannamari Välimaa, Urpo Lamminmäki, Marja Pöllänen, Riikka Ihalin
Software Mentions: 1
Published: over 11 years ago
10.1186/1756-9966-33-49
A 41-gene signature derived from breast cancer stem cells as a predictor of survival
Cited by: 24
Author(s): Zhiqiang Yin, Jing Liu, Yingchun Xu, Jian Yu, Guohui Ding, Feng Yang, Lei Tang, Baohong Liu, Yue Ma, Yuwei Xia, Xiaolin Lin, Hongxia Wang
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0064238
The Hot Pepper (Capsicum annuum) MicroRNA Transcriptome Reveals Novel and Conserved Targets: A Foundation for Understanding MicroRNA Functional Roles in Hot Pepper
Cited by: 51
Author(s): Dong-Gyu Hwang, June Hyun Park, Jae Yun Lim, Dong-Hyun Kim, Yourim Choi, Soyoung Kim, Gregory Reeves, Seon-In Yeom, Jeong-Soo Lee, Minkyu Park, Seungill Kim, Ik‐Young Choi, Doil Choi, Chanseok Shin
Software Mentions: 1
Published: over 11 years ago
10.1371/journal.pone.0030820
STAT3 Is Activated by JAK2 Independent of Key Oncogenic Driver Mutations in Non-Small Cell Lung Carcinoma
Cited by: 103
Author(s): Brendan D. Looyenga, Danielle Hutchings, Irene Cherni, Chris Kingsley, Glen J. Weiss, Jeffrey P. MacKeigan
Software Mentions: 1
Published: almost 13 years ago
10.1186/s12864-015-1563-8
Ribosome profiling reveals translation control as a key mechanism generating differential gene expression in Trypanosoma cruzi
Cited by: 104
Author(s): Pablo Smircich, Guillermo Eastman, Saloê Bispo, Marı́a Ana Duhagon, Eloise Pavão Guerra-Slompo, Beatríz Garat, Samuel Goldenberg, David J. Munroe, Bruno Dallagiovanna, Fabíola Holetz, José Sotelo‐Silveira
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0165619
Structural Patterns under X-Rays: Is SNOMED CT Growing Straight?
Cited by: 5
Author(s): Pablo López-García, Stefan Schulz
Software Mentions: 1
Published: about 8 years ago
10.1186/1471-2164-10-385
Microbial comparative pan-genomics using binomial mixture models
Cited by: 94
Author(s): Lars Snipen, Trygve Almøy, David W. Ussery
Software Mentions: 1
Published: almost 16 years ago
10.1371/journal.pone.0044234
Genetic Factors Control Nicotine Self-Administration in Isogenic Adolescent Rat Strains
Cited by: 33
Author(s): Hao Chen, Katie A. Hiler, Elizabeth A. Tolley, Shannon G. Matta, Burt M. Sharp
Software Mentions: 1
Published: about 12 years ago
10.1371/journal.pone.0229943
A novel seed treatment-based multiplication approach for cassava planting material
Cited by: 5
Author(s): Eder Jorge de Oliveira, S. A. S. de Oliveira, Caroline Otto, Titus Alicai, Juan Paulo Xavier de Freitas, Diego Fernando Marmolejo Cortes, Anthony Pariyo, Charles Liri, Gerald Adiga, Andrea Balmer, Dominik Klauser, Mike Robinson
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0218654
Delivering community-led integrated HIV and sexual and reproductive health services for sex workers: A mixed methods evaluation of the DIFFER study in Mysore, South India
Cited by: 10
Author(s): Sushena Reza-Paul, Lisa Lazarus, Raviprakash Maiya, K T Venukumar, Bhagya Lakshmi, Anuradha Roy, Partha Haldar, M Andina, Yves Lafort, Robert Lorway
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0104172
Transient Overexposure of Neuregulin 3 during Early Postnatal Development Impacts Selective Behaviors in Adulthood
Cited by: 33
Author(s): Clare Paterson, Amanda J. Law
Software Mentions: 1
Published: over 10 years ago
10.1371/journal.pone.0152760
Protection against SHIV Challenge by Subcutaneous Administration of the Plant-Derived PGT121 Broadly Neutralizing Antibody in Macaques
Cited by: 11
Author(s): Yvonne J. Rosenberg, David C. Montefiori, Celia C. LaBranche, Mark G. Lewis, Markus Sack, Jonathan Lees, Xiaoming Jiang
Software Mentions: 1
Published: over 8 years ago
10.1002/jev2.12064
Molecular and functional profiling of apical versus basolateral small extracellular vesicles derived from primary human proximal tubular epithelial cells under inflammatory conditions
Cited by: 13
Author(s): Xiangju Wang, Rachel Wilkinson, Katrina Kildey, Jacobus Ungerer, Michelle M. Hill, Alok K. Shah, Ahmed Mohamed, Mriga Dutt, Jeffrey Molendijk, Helen Healy, Andrew J. Kassianos
Software Mentions: 1
Published: almost 4 years ago
10.1371/journal.pone.0141697
Characterising Uncertainty in Expert Assessments: Encoding Heavily Skewed Judgements
Cited by: 3
Author(s): Rebecca A. O’Leary, Samantha Low‐Choy, Rebecca Fisher, Kerrie Mengersen, M. Julian Caley
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0146230
A New High-Throughput Approach to Genotype Ancient Human Gastrointestinal Parasites
Cited by: 46
Author(s): Nathalie Côté, Julien Daligault, Mélanie Pruvost, E. Andrew Bennett, Olivier Gorgé, Sílvia Guimarães, Nicolas Capelli, Matthieu Le Bailly, Eva-María Geigl, Thierry Grange
Software Mentions: 1
Published: almost 9 years ago
10.1186/s12864-017-4162-z
eRP arrangement: a strategy for assembled genomic contig rearrangement based on replication profiling in bacteria
Cited by: 4
Author(s): Nobuaki Kono, Masaru Tomita, Kazuharu Arakawa
Software Mentions: 1
Published: about 7 years ago
10.1371/journal.pone.0216928
Transcriptional changes associated with advancing stages of heart failure underlie atrial and ventricular arrhythmogenesis
Cited by: 2
Author(s): Mariana Argenziano, Michael Xavier Doss, Megan Tabler, Agapios Sachinidis, Charles Antzelevitch
Software Mentions: 1
Published: over 5 years ago
10.1371/journal.pone.0007155
Identification by Automated Screening of a Small Molecule that Selectively Eliminates Neural Stem Cells Derived from hESCs but Not Dopamine Neurons
Cited by: 38
Author(s): Yi Han, Aaron W. Miller, Julie Mangada, Ying Liu, Andrzej Swistowski, Ming Zhan, Mahendra S. Rao, Xianmin Zeng
Software Mentions: 1
Published: about 15 years ago
10.1371/journal.pone.0194571
Detection of sister-species in invasive populations of the fall armyworm Spodoptera frugiperda (Lepidoptera: Noctuidae) from Uganda
Cited by: 76
Author(s): Michael Otim, Wee Tek Tay, Tom Walsh, Dalton Kanyesigye, Stella Adumo, Joseph Abongosi, Stephen Ochen, Julius Pyton Sserumaga, Simon Alibu, Grace Abalo, Godfrey Asea, A. Agona
Software Mentions: 1
Published: over 6 years ago
10.1371/journal.pone.0156096
Evaluation of the Effects of Pasireotide LAR Administration on Lymphocele Prevention after Axillary Node Dissection for Breast Cancer: Results of a Randomized Non-Comparative Phase 2 Study
Cited by: 5
Author(s): E. Chéreau, Catherine Uzan, Emmanuelle Boutmy, Sarah Zohar, C. Bézu, Chafika Mazouni, Jean-Rémi Garbay, Émile Daraı̈, Roman Rouzier
Software Mentions: 1
Published: over 8 years ago
10.1371/journal.pone.0215794
Research applications of primary biodiversity databases in the digital age
Cited by: 69
Author(s): Joan E. Ball-Damerow, Laura Brenskelle, Narayani Barve, Pamela S. Soltis, Petra Sierwald, Rüdiger Bieler, Raphael LaFrance, Arturo H. Ariño, Robert Guralnick
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0140171
Modelling Blood Flow and Metabolism in the Preclinical Neonatal Brain during and Following Hypoxic-Ischaemia
Cited by: 11
Author(s): Matthew Caldwell, Tracy Moroz, Tharindi Hapuarachchi, Alan Bainbridge, Nicola J. Robertson, Chris E. Cooper, Ilias Tachtsidis
Software Mentions: 1
Published: about 9 years ago
10.1007/s00384-017-2802-z
Diversion colitis 25 years later: the phenomenon of the disease
Cited by: 16
Author(s): Marek Szczepkowski, Tomasz Banasiewicz, Adam Kobus
Software Mentions: 1
Published: over 7 years ago
10.1371/journal.pone.0204994
Recent experience impacts social behavior in a novel context by adult zebrafish (Danio rerio)
Cited by: 16
Author(s): Delawrence J. Sykes, Piyumika S. Suriyampola, Emilı́a P. Martins
Software Mentions: 1
Published: about 6 years ago
10.1371/journal.pone.0192348
Retinal genes are differentially expressed in areas of primary versus secondary degeneration following partial optic nerve injury
Cited by: 10
Author(s): Wissam Chiha, Chrisna J LeVaillant, Carole A. Bartlett, Alex W. Hewitt, Phillip E. Melton, Maria Fitzgerald, Alan R. Harvey
Software Mentions: 1
Published: almost 7 years ago
10.1371/journal.pone.0212649
Introduction of the YTE mutation into the non-immunogenic HIV bnAb PGT121 induces anti-drug antibodies in macaques
Cited by: 10
Author(s): Yvonne J. Rosenberg, George K. Lewis, David C. Montefiori, Celia C. LaBranche, Mark G. Lewis, Lori A. Urban, Jonathan Lees, Lingjun Mao, Xiaoming Jiang
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pone.0073827
Metagenomic Profiling Reveals Lignocellulose Degrading System in a Microbial Community Associated with a Wood-Feeding Beetle
Cited by: 106
Author(s): Erin D. Scully, Scott M. Geib, Kelli Hoover, Ming Tien, Susannah G. Tringe, Kerrie Barry, Tijana Glavina del Rio, Mansi Chovatia, Joshua R. Herr, John E. Carlson
Software Mentions: 1
Published: about 11 years ago
10.1371/journal.pone.0084517
Angiotensin-Induced Abdominal Aortic Aneurysms in Hypercholesterolemic Mice: Role of Serum Cholesterol and Temporal Effects of Exposure
Cited by: 13
Author(s): Petra Prins, Michael Hill, David Airey, Sam Nwosu, Prudhvidhar R. Perati, Hagai Tavori, MacRae F. Linton, Valentina Kon, Sergio Fazio, Uchechukwu K.A. Sampson
Software Mentions: 1
Published: almost 11 years ago
10.1111/ics.12622
Comprehensive histological investigation of age‐related changes in dermal extracellular matrix and muscle fibers in the upper lip vermilion
Cited by: 0
Author(s): Takamasa Gomi, Toru Imamura
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0046359
Deregulated Sex Chromosome Gene Expression with Male Germ Cell-Specific Loss of Dicer1
Cited by: 46
Author(s): Anne R. Greenlee, Meng-Shin Shiao, Elizabeth M. Snyder, F. William Buaas, Tongjun Gu, Timothy M. Stearns, Manju Sharma, Elizabeth P. Murchison, Gabriella Puente, Robert E. Braun
Software Mentions: 1
Published: about 12 years ago
10.1186/s13613-015-0056-x
Withholding or withdrawal of treatment under French rules: a study performed in 43 intensive care units
Cited by: 53
Author(s): Olivier Lesieur, Maxime Leloup, Frédéric Gonzalez, Marie‐France Mamzer
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0235141
Differences in the frequency of genetic variants associated with iron imbalance among global populations
Cited by: 14
Author(s): Momodou W. Jallow, Anthony Cerami, Taane G. Clark, Andrew M. Prentice, Susana Campino
Software Mentions: 1
Published: over 4 years ago
10.1371/journal.pone.0034683
Effective DNA/RNA Co-Extraction for Analysis of MicroRNAs, mRNAs, and Genomic DNA from Formalin-Fixed Paraffin-Embedded Specimens
Cited by: 59
Author(s): Adam Kotorashvili, Andrew Ramnauth, Christina Liu, Juan Lin, Kenny Ye, Ryung Kim, Rachel B. Hazan, Thomas E. Rohan, Susan Fineberg, Olivier Loudig
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0120311
Scanning the Landscape of Genome Architecture of Non-O1 and Non-O139 Vibrio cholerae by Whole Genome Mapping Reveals Extensive Population Genetic Diversity
Cited by: 18
Author(s): Carol Chapman, Matthew Henry, Kimberly A. Bishop‐Lilly, Joy Awosika, Adam Briska, Ryan Ptashkin, Trevor Wagner, Chythanya Rajanna, Hsinyi Tsang, Shannon L. Johnson, Vishwesh Mokashi, Patrick Chain, Shanmuga Sozhamannan
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0128651
Evidence for Immune Response, Axonal Dysfunction and Reduced Endocytosis in the Substantia Nigra in Early Stage Parkinson’s Disease
Cited by: 103
Author(s): Anke A. Dijkstra, Angela Ingrassia, Renée X. de Menezes, Ronald E. van Kesteren, Annemieke Rozemüller, Peter Heutink, Wilma D. J. van de Berg
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0118847
Genetic Dissection of Grain Size and Grain Number Trade-Offs in CIMMYT Wheat Germplasm
Cited by: 80
Author(s): Simon Griffiths, Luzie U. Wingen, Julian Pietragalla, Guillermo García, Ahmed Khairul Hasan, Daniel J. Miralles, Daniel F. Calderini, Jignaben Bipinchandra Ankleshwaria, Michelle Leverington Waite, James Simmonds, J. W. Snape, M.P. Reynolds
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pntd.0001231
Genotype V Japanese Encephalitis Virus Is Emerging
Cited by: 127
Author(s): Minghua Li, Shihong Fu, Weixin Chen, Huanyu Wang, Yadong Guo, Qiyong Liu, Yixing Li, Heng Luo, Wa Da, Dun Zhu Duo Ji, Xiu-Min Ye, Guodong Liang
Software Mentions: 1
Published: over 13 years ago
10.1371/journal.pntd.0008207
Guinea worm in domestic dogs in Chad: A description and analysis of surveillance data
Cited by: 14
Author(s): Sarah Anne J. Guagliardo, Sharon L. Roy, Ernesto Ruiz‐Tiben, Hubert Zirimwabagabo, Mario Romero, Elisabeth Chop, Philippe Tchindebet Ouakou, Donald R. Hopkins, Adam Weiss
Software Mentions: 1
Published: over 4 years ago
10.1155/2015/197603
Exploring the Functional Disorder and Corresponding Key Transcription Factors in Intraductal Papillary Mucinous Neoplasms Progression
Cited by: 3
Author(s): Guohui Bai, Chenxuan Wu, Yingtang Gao, Shu Gao
Software Mentions: 1
Published: almost 10 years ago
10.1371/journal.pntd.0007579
Engineered action at a distance: Blood-meal-inducible paralysis in Aedes aegypti
Cited by: 11
Author(s): Roya Elaine Haghighat-Khah, Tim Harvey‐Samuel, Subhash Basu, Oliver StJohn, Sarah Scaife, Sebald A. N. Verkuijl, Erica Lovett, Luke Alphey
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0032166
Monocyte Gene Expression Signature of Patients with Early Onset Coronary Artery Disease
Cited by: 32
Author(s): Suthesh Sivapalaratnam, Hanneke Basart, Nicholas A. Watkins, Stephanie Maiwald, Augusto Rendon, Unni Krishnan, Brigitte M. Sondermeijer, Esther E. Creemers, S.J. Pinto-Sietsma, Kees Hovingh, Willem H. Ouwehand, John J.P. Kastelein, Alison H. Goodall, Mieke D. Trip
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pmed.0020284
Profile of Immune Cells in Axillary Lymph Nodes Predicts Disease-Free Survival in Breast Cancer
Cited by: 186
Author(s): Holbrook E. Kohrt, Navid Nouri, Kent W. Nowels, Denise Johnson, Susan Holmes, Peter P. Lee
Software Mentions: 1
Published: about 19 years ago
10.3390/ani9100707
Comparison of Defined Course Doses (DCDvet) for Blanket and Selective Antimicrobial Dry Cow Therapy on Conventional and Organic Farms
Cited by: 9
Author(s): Clair L. Firth, Annemarie Käsbohrer, C. Egger-Danner, Klemens Fuchs, Beate Pinior, Franz-Ferdinand Roch, W. Obritzhauser
Software Mentions: 1
Published: about 5 years ago
10.1371/journal.pone.0012141
NMDA Receptors on Non-Dopaminergic Neurons in the VTA Support Cocaine Sensitization
Cited by: 36
Author(s): Yu Luo, Cameron H. Good, Oscar Dı́az-Ruiz, Yajun Zhang, Alexander F. Hoffman, Lufei Shan, Serena Y. Kuang, Nasir Malik, Vladimir I. Chefer, Andreas C. Tomac, Carl R. Lupica, Cristina M. Bäckman
Software Mentions: 1
Published: over 14 years ago
10.1371/journal.pone.0000795
Simple Sequence Repeats Provide a Substrate for Phenotypic Variation in the Neurospora crassa Circadian Clock
Cited by: 65
Author(s): Todd P. Michael, Sohyun Park, Tae Sung Kim, Jim Booth, Amanda Byer, Qi Sun, Joanne Chory, Kwangwon Lee
Software Mentions: 1
Published: about 17 years ago
10.1016/j.jprot.2021.104236
Proteomic profiling of soft tissue sarcomas with SWATH mass spectrometry
Cited by: 11
Author(s): Martina Milighetti, Lukáš Krásný, Alex Lee, Gabriele Morani, Cornelia Szecsei, Yingtong Chen, Nafia Guljar, Frank McCarthy, Christopher P Wilding, Amani Arthur, Cyril Fisher, Ian Judson, Khin Thway, Maggie C.U. Cheang, Robin L. Jones, Paul H. Huang
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pmed.1002041
Prediction of Bladder Outcomes after Traumatic Spinal Cord Injury: A Longitudinal Cohort Study
Cited by: 48
Author(s): Chiara Pavese, Marc P. Schneider, Martin Schubert, Armin Curt, Giorgio Scivoletto, Enrico Finazzi‐Agrò, Ulrich Mehnert, Doris Maier, Rainer Abel, F. Röhrich, Norbert Weidner, Rüdiger Rupp, Alfons G.H. Kessels, Lucas M. Bachmann, Thomas M. Kessler
Software Mentions: 1
Published: over 8 years ago