Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: metaplot

https://packages.ecosyste.ms/registries/pypi.org/packages/metaplot

metaplot
3 versions
Latest release: about 6 years ago
81 downloads last month

Papers Mentioning metaplot 19

Synergy between Variant PRC1 Complexes Defines Polycomb-Mediated Gene Repression
Cited by: 187
Author(s): Nadezda A. Fursova, Neil P. Blackledge, Manabu Nakayama, Shinsuke Ito, Haruhiko Koseki, Anca M. Farcas, Hamish W King, Haruhiko Koseki, Robert J. Klose
Software Mentions: 11
Published: over 5 years ago

10.1016/j.molcel.2019.12.001

PRC1 Catalytic Activity Is Central to Polycomb System Function
Cited by: 163
Author(s): Neil P. Blackledge, Nadezda A. Fursova, Jessica R. Kelley, Miles K. Huseyin, Angelika Feldmann, Robert J. Klose
Software Mentions: 11
Published: almost 5 years ago

10.1186/s13059-021-02374-3

The global and promoter-centric 3D genome organization temporally resolved during a circadian cycle
Cited by: 18
Author(s): Mayra Furlan-Magaril, Masami Ando-Kuri, Rodrigo G. Arzate-Mejía, Jörg Morf, Jonathan Cairns, Abraham Román-Figueroa, Luis Tenorio-Hernández, Augusto César Poot-Hernández, Simon Andrews, Csilla Várnai, Boo Virk, Steven Wingett, Peter Fraser
Software Mentions: 9
Published: over 3 years ago

10.1016/j.molcel.2020.09.021

Stress-Induced Translation Inhibition through Rapid Displacement of Scanning Initiation Factors
Cited by: 49
Author(s): Stefan Bresson, Vadim Shchepachev, Christos Spanos, Tomasz W. Turowski, Juri Rappsilber, David Tollervey
Software Mentions: 7
Published: about 4 years ago

10.7554/eLife.22631

The pioneer factor OCT4 requires the chromatin remodeller BRG1 to support gene regulatory element function in mouse embryonic stem cells
Cited by: 184
Author(s): Hamish W King, Robert J. Klose
Software Mentions: 7
Published: over 7 years ago

10.3389/fcell.2020.00553

ADNP Controls Gene Expression Through Local Chromatin Architecture by Association With BRG1 and CHD4
Cited by: 22
Author(s): Xiaoyun Sun, Wenjun Yu, Li Li, Yuhua Sun
Software Mentions: 6
Published: over 4 years ago

10.1186/s12870-020-02814-5

Integrated analysis of DNA methylome and transcriptome reveals epigenetic regulation of CAM photosynthesis in pineapple
Cited by: 8
Author(s): Yan Shi, Xingtan Zhang, Xiaojun Chang, Mei Yan, Hui Zhao, Yuan Qin, Haifeng Wang
Software Mentions: 5
Published: almost 4 years ago

10.7554/eLife.47891

Epimutations are associated with CHROMOMETHYLASE 3-induced de novo DNA methylation
Cited by: 54
Author(s): Jered M. Wendte, Yinwen Zhang, Lexiang Ji, Xiulin Shi, Rashmi R. Hazarika, Yadollah Shahryary, Frank Johannes, Robert J. Schmitz
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0253341

Metaplot: A new Stata module for assessing heterogeneity in a meta-analysis
Cited by: 5
Author(s): Jalal Poorolajal, Shahla Noornejad
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1008390

Identification of a novel base J binding protein complex involved in RNA polymerase II transcription termination in trypanosomes
Cited by: 31
Author(s): Rudo Kieft, Yang Zhang, Alexandre P. Marand, Jose Dagoberto Moran, Robert Bridger, Lance Wells, Robert J. Schmitz, Robert Sabatini
Software Mentions: 4
Published: over 4 years ago

10.1016/j.cell.2019.01.029

Co-targeting RNA Polymerases IV and V Promotes Efficient De Novo DNA Methylation in Arabidopsis
Cited by: 109
Author(s): Javier Gallego-Bartolomé, Wanlu Liu, Peggy Hsuanyu Kuo, Suhua Feng, Basudev Ghoshal, Jason Gardiner, Jiannan Zhao, Soo Young Park, Joanne Chory, Steven E. Jacobsen
Software Mentions: 4
Published: almost 6 years ago

10.7554/eLife.28306

Defining the location of promoter-associated R-loops at near-nucleotide resolution using bisDRIP-seq
Cited by: 94
Author(s): Jason G Dumelie, Samie R. Jaffrey
Software Mentions: 4
Published: about 7 years ago

10.7554/eLife.37084

FBXL19 recruits CDK-Mediator to CpG islands of developmental genes priming them for activation during lineage commitment
Cited by: 21
Author(s): Emilia Dimitrova, Takashi Kondo, Angelika Feldmann, Manabu Nakayama, Haruhiko Koseki, Rebecca Konietzny, Benedikt M. Kessler, Robert J. Klose
Software Mentions: 3
Published: over 6 years ago

10.1186/s13643-021-01644-2

Non-invasive and minimally invasive glucose monitoring devices: a systematic review and meta-analysis on diagnostic accuracy of hypoglycaemia detection
Cited by: 10
Author(s): Nicole Lindner, Aya Kuwabara, Tim Holt
Software Mentions: 3
Published: over 3 years ago

10.1186/s13072-020-00361-9

Efficient and accurate determination of genome-wide DNA methylation patterns in Arabidopsis thaliana with enzymatic methyl sequencing
Cited by: 50
Author(s): Suhua Feng, Zhenhui Zhong, Wang Ming, Steven E. Jacobsen
Software Mentions: 3
Published: about 4 years ago

10.1186/s13072-017-0141-5

Genome-wide search for Zelda-like chromatin signatures identifies GAF as a pioneer factor in early fly development
Cited by: 23
Author(s): Arbel Moshe, Tommy Kaplan
Software Mentions: 3
Published: over 7 years ago

10.7717/peerj.7847

Single-base-resolution methylome of giant panda’s brain, liver and pancreatic tissue
Cited by: 2
Author(s): Jianying Ren, Fang Shen, Liang Zhang, Jie Sun, Miao Yang, Mingyu Yang, Rong Hou, Bisong Yue, Xiuyue Zhang
Software Mentions: 2
Published: about 5 years ago

10.1111/pbi.13018

<scp>DNA</scp>methylome analysis provides evidence that the expansion of the tea genome is linked to<scp>TE</scp>bursts
Cited by: 36
Author(s): Lei Wang, Yan Shi, Xiaojun Chang, Shengli Jing, Qun‐Jie Zhang, Chenjiang You, Hongyu Yuan, Haifeng Wang
Software Mentions: 2
Published: about 6 years ago

10.1038/s41598-021-85970-4

LASCA: loop and significant contact annotation pipeline
Cited by: 3
Author(s): Artem V. Luzhin, Arkadiy K. Golov, А. В. Гаврилов, Artem K. Velichko, Sergey V. Ulianov, Sergey V. Razin, Omar L. Kantidze
Software Mentions: 2
Published: over 3 years ago