Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.22631

https://doi.org/10.7554/eLife.22631

Cited by: 184
Author(s): Hamish W King, Robert J. Klose
Published: about 7 years ago

Software Mentions 7

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: DiffBind
Differential Binding Analysis of ChIP-Seq Peak Data
Papers that mentioned: 217
cran: metaplot
Data-Driven Plot Design
Papers that mentioned: 19
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
pypi: metaplot
metaplot
Papers that mentioned: 19
pypi: NucleoATAC
python package for calling nucleosomes with ATAC-Seq
Papers that mentioned: 17