pypi: igraph | Projects | Ecosyste.ms: Papers

10.1128/mSystems.00960-20

Human Gene Functional Network-Informed Prediction of HIV-1 Host Dependency Factors
Cited by: 3
Author(s): Chen Fu, Shiping Yang, Xiaodi Yang, Xianyi Lian, Yan Huang, Xiaobao Dong, Ziding Zhang
Software Mentions: 4
Published: almost 4 years ago

10.3390/molecules24142529

High Impact: The Role of Promiscuous Binding Sites in Polypharmacology
Cited by: 8
Author(s): Natacha Cerisier, Michel Petitjean, Leslie Regad, Quentin Bayard, Manon Réau, Anne Badel, Anne-Claude Camproux
Software Mentions: 4
Published: over 5 years ago

10.1016/j.mcpro.2021.100061

Protein Phosphorylation in Depolarized Synaptosomes: Dissecting Primary Effects of Calcium from Synaptic Vesicle Cycling
Cited by: 8
Author(s): Ivan Silbern, Kuan‐Ting Pan, Maksims Fiošins, Stefan Bonn, Silvio O. Rizzoli, Eugenio F. Fornasiero, Henning Urlaub, Reinhard Jahn
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12862-020-01690-9

Genotypic similarities among the parthenogenetic Darevskia rock lizards with different hybrid origins
Cited by: 9
Author(s): David Tarkhnishvili, Alexey Yanchukov, Mehmet Kürşat Şahin, Mariam Gabelaia, Marine Murtskhvaladze, Kamίl Candan, Eduard Galoyan, Marine Arakelyan, Giorgi Iankoshvili, Yusuf Kumlutaş, Çetίn Ilgaz, Ferhat Matur, Faruk Çolak, Meriç Erdolu, Sofiko Kurdadze, Natia Barateli, Cort L. Anderson
Software Mentions: 4
Published: about 4 years ago

10.1002/ece3.4646

Killer whales (Orcinus orca) in Iceland show weak genetic structure among diverse isotopic signatures and observed movement patterns
Cited by: 6
Author(s): Sara B. Tavares, Filipa I. P. Samarra, Sónia Pascoal, Jeff A. Graves, Patrick J. O. Miller
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pcbi.1003808

SANTA: Quantifying the Functional Content of Molecular Networks
Cited by: 56
Author(s): Alex J. Cornish, Florian Markowetz
Software Mentions: 4
Published: about 10 years ago

10.3389/fmicb.2016.00434

Restructuring of Epibacterial Communities on Fucus vesiculosus forma mytili in Response to Elevated pCO2 and Increased Temperature Levels
Cited by: 26
Author(s): Birte Mensch, Sven C. Neulinger, Angelika Graiff, Andreas Pansch, Sven Künzel, Martin Fischer, Ruth A. Schmitz
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pcbi.1002603

An Integrated Regulatory Network Reveals Pervasive Cross-Regulation among Transcription and Splicing Factors
Cited by: 15
Author(s): Idit Kosti, Predrag Radivojac, Yael Mandel-Gutfreund
Software Mentions: 4
Published: over 12 years ago

10.1002/ece3.4664

Social structure contains epidemics and regulates individual roles in disease transmission in a group-living mammal
Cited by: 34
Author(s): Carly Rozins, Matthew J. Silk, Darren P. Croft, Richard J. Delahay, Dave Hodgson, Robbie A. McDonald, Nicola Weber, Mike Boots
Software Mentions: 4
Published: about 6 years ago

10.1038/s41598-021-94724-1

A systematic comparison of community detection algorithms for measuring selective exposure in co-exposure networks
Cited by: 5
Author(s): Subhayan Mukerjee
Software Mentions: 4
Published: over 3 years ago

10.2196/10942

Estimating Determinants of Attrition in Eating Disorder Communities on Twitter: An Instrumental Variables Approach
Cited by: 6
Author(s): Tao Wang, Emmanouil Mentzakis, Markus Brede, Antonella Ianni
Software Mentions: 4
Published: over 5 years ago

10.1186/s12862-015-0298-0

A Boolean gene regulatory model of heterosis and speciation
Cited by: 8
Author(s): Peter M. F. Emmrich, Hannah Roberts, Véra Pancaldi
Software Mentions: 4
Published: over 9 years ago

10.3390/microorganisms9030549

Lake Ecosystem Robustness and Resilience Inferred from a Climate-Stressed Protistan Plankton Network
Cited by: 16
Author(s): Dominik Forster, Zhishuai Qu, Gianna Pitsch, Estelle P. Bruni, Barbara Kammerlander, Thomas Pröschold, Bettina Sonntag, Thomas Posch, Thorsten Stoeck
Software Mentions: 4
Published: over 3 years ago

10.3389/fmicb.2019.01015

Leaf and Root Endospheres Harbor Lower Fungal Diversity and Less Complex Fungal Co-occurrence Patterns Than Rhizosphere
Cited by: 48
Author(s): Xin Qian, Hanzhou Li, Yong-Long Wang, Bian Wu, Mingsong Wu, Liang Chen, Xingchun Li, Ying Zhang, Xiangping Wang, Miaomiao Shi, Yong Zheng, Liang‐Dong Guo, Dianxiang Zhang
Software Mentions: 4
Published: over 5 years ago

10.1002/ece3.5567

Predicting species occurrences with habitat network models
Cited by: 1
Author(s): Damian O. Ortiz‐Rodríguez, Antoine Guisan, Rolf Holderegger, Maarten J. van Strien
Software Mentions: 4
Published: about 5 years ago

10.2196/jmir.7347

Tracing the Potential Flow of Consumer Data: A Network Analysis of Prominent Health and Fitness Apps
Cited by: 39
Author(s): Quinn Grundy, Fabian Held, Lisa Bero
Software Mentions: 4
Published: over 7 years ago

10.3390/microorganisms8020190

Keystone Species and Modularity in Microbial Hydrocarbon Degradation Uncovered by Network Analysis and Association Rule Mining
Cited by: 5
Author(s): Florian Centler, Sarah Günnigmann, Ingo Fetzer, Annelie Wendeberg
Software Mentions: 4
Published: almost 5 years ago

10.3389/fmicb.2018.02922

Occurrence and Fate of Ultramicrobacteria in a Full-Scale Drinking Water Treatment Plant
Cited by: 8
Author(s): Jie Liu, Renxin Zhao, Jiayu Zhang, Guijuan Zhang, Ke Yu, Xiaoyan Li, Bing Li
Software Mentions: 4
Published: almost 6 years ago

10.3390/microorganisms8111631

Rapid Changes in Microbial Community Structures along a Meandering River
Cited by: 11
Author(s): Perrine Cruaud, Adrien Vigneron, Caetano C. Dorea, Manuel J. Rodriguez, Steve J. Charette
Software Mentions: 4
Published: about 4 years ago

10.3390/microorganisms7120611

Elevation is Associated with Human Skin Microbiomes
Cited by: 16
Author(s): Huan Li, Yijie Wang, Qiaoling Yu, Tianshu Feng, Rui Zhou, Liye Shao, Jiapeng Qu, Nan Li, Tingbei Bo, Huakun Zhou
Software Mentions: 4
Published: almost 5 years ago

10.1186/s40168-020-00799-9

Rhizosphere protists are key determinants of plant health
Cited by: 123
Author(s): Wu Xiong, Yuqi Song, Kun Yang, Yian Gu, Zhong Wei, George A. Kowalchuk, Yangchun Xu, Alexandre Jousset, Qirong Shen, Stefan Geisen
Software Mentions: 4
Published: over 4 years ago

10.3389/fgene.2015.00208

Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality
Cited by: 585
Author(s): Zhian N. Kamvar, Jonah C. Brooks, Niklaus J. Grünwald
Software Mentions: 4
Published: over 9 years ago

10.1186/s12859-018-2131-4

On the rank-distance median of 3 permutations
Cited by: 4
Author(s): Leonid Chindelevitch, João Paulo Pereira Zanetti, João Meidânis
Software Mentions: 4
Published: over 6 years ago

10.3390/nu9121307

Exploring the Impact of Food on the Gut Ecosystem Based on the Combination of Machine Learning and Network Visualization
Cited by: 14
Author(s): Hideaki Shima, Shizuka Masuda, Yasuhiro Date, Amiu Shino, Yuuri Tsuboi, Mizuho Kajikawa, Yoshihiro Inoué, Taisei Kanamoto, Jun Kikuchi
Software Mentions: 4
Published: almost 7 years ago

10.1186/s12864-017-4242-0

Unraveling the evolution and coevolution of small regulatory RNAs and coding genes in Listeria
Cited by: 16
Author(s): Franck Cerutti, Ludovic Mallet, Anaïs Painset, Claire Hoede, Annick Moisan, Christophe Bécavin, Manuel Duval, Olivier Dussurget, Pascale Cossart, Christine Gaspin, Hélène Chiapello
Software Mentions: 4
Published: about 7 years ago

10.1186/s40168-021-01016-x

Revealing taxon-specific heavy metal-resistance mechanisms in denitrifying phosphorus removal sludge using genome-centric metaproteomics
Cited by: 27
Author(s): Yuan Lin, Liye Wang, Ke Xu, Kan Li, Hongqiang Ren
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0070551

The Discrimination Power of Structural SuperIndices
Cited by: 3
Author(s): Matthias Dehmer, Abbe Mowshowitz
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0057780

Functional and Structural Neural Network Characterization of Serotonin Transporter Knockout Rats
Cited by: 15
Author(s): Kajo van der Marel, Judith R. Homberg, Willem M. Otte, Rick M. Dijkhuizen
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0202063

Cross-species alcohol dependence-associated gene networks: Co-analysis of mouse brain gene expression and human genome-wide association data
Cited by: 11
Author(s): Kristin M. Mignogna, Silviu‐Alin Bacanu, Brien P. Riley, Aaron R. Wolen, Michael F. Miles
Software Mentions: 4
Published: over 5 years ago

10.1186/s12870-017-1062-y

Relationships between drought, heat and air humidity responses revealed by transcriptome-metabolome co-analysis
Cited by: 46
Author(s): Elisabeth Georgii, Ming Jin, Jin Zhao, Basem Kanawati, Philippe Schmitt‐Kopplin, Andreas Albert, Jana Barbro Winkler, Anton R. Schäffner
Software Mentions: 4
Published: over 7 years ago

10.1080/22221751.2018.1563458

Differential effects of depot medroxyprogesterone acetate administration on vaginal microbiome in Hispanic White and Black women
Cited by: 22
Author(s): Liying Yang, Yuhan Hao, Jiyuan Hu, Dervla Kelly, Hui-Lin Li, Stuart M. Brown, Carley Tasker, Natalie Roche, Theresa L. Chang, Zhiheng Pei
Software Mentions: 4
Published: almost 6 years ago

10.1186/s12864-020-07148-y

Analysing the meta-interaction between pathways by gene set topological impact analysis
Cited by: 2
Author(s): Yan Shu, Xu Chi, Xiao Chang, Mengliang Tian
Software Mentions: 4
Published: about 4 years ago

10.1186/s40168-015-0089-2

Linear growth faltering in infants is associated with Acidaminococcus sp. and community-level changes in the gut microbiota
Cited by: 101
Author(s): Ethan Gough, David A. Stephens, Erica E. M. Moodie, Andrew J. Prendergast, Rebecca J. Stoltzfus, Jean H. Humphrey, Amee R. Manges
Software Mentions: 4
Published: over 9 years ago

10.3389/fmicb.2021.726923

Genome-Resolved Metagenomics of the Chicken Gut Microbiome
Cited by: 25
Author(s): Maia Segura-Wang, Nikolaus Grabner, Andreas Koestelbauer, Viviana Klose, Mahdi Ghanbari
Software Mentions: 4
Published: over 3 years ago

10.3390/e15114932

Dynamical Structure of a Traditional Amazonian Social Network
Cited by: 24
Author(s): Paul L. Hooper, Simon DeDeo, Ann E. Caldwell Hooper, Michael Gurven, Hillard Kaplan
Software Mentions: 4
Published: about 11 years ago

10.1186/s40168-020-00827-8

Disentangling the mechanisms shaping the surface ocean microbiota
Cited by: 131
Author(s): Ramiro Logares, Ina Maria Deutschmann, Pedro C. Junger, Caterina R. Giner, Anders K. Krabberød, Thomas Sebastian Benedikt Schmidt, Laura Rubinat-Ripoll, Mireia Mestre, Guillem Salazar, Clara Ruiz‐González, Marta Sebastián, Colomban de Vargas, Silvia G. Acinas, Carlos M. Duarte, Josep M. Gasol, Ramón Massana
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0165987

Networks Depicting the Fine-Scale Co-Occurrences of Fungi in Soil Horizons
Cited by: 67
Author(s): Hirokazu Toju, Osamu Kishida, Noboru Katayama, Kentaro Takagi
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0123082

Genomic Heterogeneity of Osteosarcoma - Shift from Single Candidates to Functional Modules
Cited by: 27
Author(s): Kathrin Poos, Jan Smida, Doris Maugg, Gertrud Eckstein, Daniel Baumhoer, Michaela Nathrath, Eberhard Korsching
Software Mentions: 4
Published: over 9 years ago

10.1186/s12859-019-2800-y

Integrating data and knowledge to identify functional modules of genes: a multilayer approach
Cited by: 10
Author(s): Lifan Liang, Vicky Chen, Kunju Zhu, Xiao-Nan Fan, Xinghua Lu, Songjian Lu
Software Mentions: 4
Published: over 5 years ago

10.1186/s40168-019-0721-7

Longitudinal investigation of the swine gut microbiome from birth to market reveals stage and growth performance associated bacteria
Cited by: 231
Author(s): Xiaofan Wang, Tsung Cheng Tsai, Feilong Deng, Xiaoyuan Wei, Jianmin Chai, J. S. Knapp, J. K. Apple, C. V. Maxwell, Jung Ae Lee, Ying Liu, Jiangchao Zhao
Software Mentions: 4
Published: over 5 years ago

10.1002/mbo3.1200

Active microbial ecosystem in glacier basal ice fuelled by iron and silicate comminution‐derived hydrogen
Cited by: 2
Author(s): Mario Toubes-Rodrigo, Sanja Potgieter‐Vermaak, Robin Sen, Edda Sigurdís Oddsdóttir, David R. Elliott, Simon J. Cook
Software Mentions: 4
Published: over 3 years ago

10.1002/mbo3.727

Change in the intestinal bacterial community structure associated with environmental microorganisms during the growth of Eriocheir sinensis
Cited by: 25
Author(s): Chenhe Wang, Yanfeng Zhou, Dawei Lv, You Ge, Huan Li, You Yang
Software Mentions: 4
Published: about 6 years ago

10.1099/mgen.0.000108

A population genomics approach to exploiting the accessory 'resistome' of Escherichia coli
Cited by: 18
Author(s): Robert Goldstone, David George Emslie Smith
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0252471

Influence of number of individuals and observations per individual on a model of community structure
Cited by: 4
Author(s): Julia Sunga, Quinn M. R. Webber, Hugh G. Broders
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-021-81507-x

Multiple bacteria associated with the more dysbiotic genitourinary microbiomes in patients with type 2 diabetes mellitus
Cited by: 6
Author(s): Hua Zha, Fengping Liu, Zongxin Ling, Kevin Chang, Jiezuan Yang, Lanjuan Li
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0211546

Factors influencing sedentary behaviour: A system based analysis using Bayesian networks within DEDIPAC
Cited by: 23
Author(s): Christoph Buck, Anne Loyen, Ronja Foraita, Jelle Van Cauwenberg, Marieke De Craemer, Ciarán MacDonncha, Jean‐Michel Oppert, Johannes Brug, Nanna Lien, Greet Cardon, Iris Pigeot, Sébastien Chastin
Software Mentions: 4
Published: almost 6 years ago

10.1099/mgen.0.000070

Phylogenetic structure of European Salmonella Enteritidis outbreak correlates with national and international egg distribution network
Cited by: 53
Author(s): Tim Dallman, Thomas Inns, Thibaut Jombart, Philip Ashton, Nicholas J. Loman, Carol Chatt, Ute Messelhaeusser, Wolfgang Rabsch, Sandra Simon, Sergejs Nikisins, Helen Bernard, Simon Le Hello, Nathalie Jourdan da-Silva, Christian Kornschober, Joël Mossong, Peter M. Hawkey, Elizabeth de Pinna, Kathie Grant, Paul Cleary
Software Mentions: 4
Published: about 8 years ago

10.1186/s13012-016-0499-y

Forging a link between mentoring and collaboration: a new training model for implementation science
Cited by: 35
Author(s): Douglas A. Luke, Ana A. Baumann, Bobbi J. Carothers, John Landsverk, Enola K. Proctor
Software Mentions: 4
Published: about 8 years ago

10.1371/journal.pone.0230941

Demarcating geographic regions using community detection in commuting networks with significant self-loops
Cited by: 14
Author(s): Mark He, Joseph Glasser, Nathaniel Pritchard, Shankar Bhamidi, Nikhil Kaza
Software Mentions: 4
Published: over 4 years ago

10.1007/s00248-021-01719-6

Assessing Biotic and Abiotic Interactions of Microorganisms in Amazonia through Co-Occurrence Networks and DNA Metabarcoding
Cited by: 8
Author(s): Camila Duarte Ritter, Dominik Forster, Josué A. R. Azevedo, Alexandre Antonelli, R. Henrik Nilsson, Martha E. Trujillo, Micah Dunthorn
Software Mentions: 4
Published: almost 4 years ago

10.1186/1471-2164-16-S5-S2

Integrative network-based approach identifies key genetic elements in breast invasive carcinoma
Cited by: 27
Author(s): Mohamed Hamed, Christian Spaniol, Alexander Zapp, Volkhard Helms
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-020-75259-3

Decrease in social cohesion in a colonial seabird under a perturbation regime
Cited by: 6
Author(s): Meritxell Genovart, Olivier Giménez, Albert Bertolero, Rémi Choquet, Daniel Oró, Roger Pradel
Software Mentions: 4
Published: about 4 years ago

10.1038/s41598-020-74798-z

Epigenetic alterations in skin homing CD4+CLA+ T cells of atopic dermatitis patients
Cited by: 19
Author(s): Nathalie Acevedo, Rui Benfeitas, Shintaro Katayama, Sören Bruhn, Ann‐Catrin Andersson, Gustav Wikberg, Lena Lundeberg, Jessica M. Lindvall, Dario Greco, Juha Kere, Cilla Söderhäll, Annika Scheynius
Software Mentions: 4
Published: about 4 years ago

10.3390/metabo10060220

Non-Targeted Metabolite Profiles and Sensory Properties Elucidate Commonalities and Differences of Wines Made with the Same Variety but Different Cultivar Clones
Cited by: 6
Author(s): Álvaro Cuadros-Inostroza, Claudio Verdugo-Alegría, Lothar Willmitzer, Yerko Moreno-Simunovic, José G. Vallarino
Software Mentions: 4
Published: over 4 years ago

10.3390/metabo9100210

Plasma Metabolic Signature and Abnormalities in HIV-Infected Individuals on Long-Term Successful Antiretroviral Therapy
Cited by: 41
Author(s): Hemalatha Babu, Maike Sperk, Anoop T. Ambikan, Gladys Rachel, Vinod Kumar Viswanathan, Srikanth Tripathy, Piotr Nowak, Luke Elizabeth Hanna, Ujjwal Neogi
Software Mentions: 4
Published: about 5 years ago

10.1111/1462-2920.13463

Pediatric obesity is associated with an altered gut microbiota and discordant shifts in <scp>F</scp>irmicutes populations
Cited by: 286
Author(s): Alessandra Riva, Francesca Borgo, Carlotta Lassandro, Elvira Verduci, Giulia Morace, Elisa Borghi, David Berry
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0194656

Social network cohesion in school classes promotes prosocial behavior
Cited by: 31
Author(s): Wouter van den Bos, Eveline A. Crone, Rosa Meuwese, Berna Güroğlu
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0028646

RegnANN: Reverse Engineering Gene Networks Using Artificial Neural Networks
Cited by: 10
Author(s): Marco Grimaldi, Roberto Visintainer, Giuseppe Jurman
Software Mentions: 4
Published: almost 13 years ago

10.1371/journal.pone.0254852

Ward-level factors associated with methicillin-resistant Staphylococcus aureus acquisition–an electronic medical records study in Singapore
Cited by: 2
Author(s): Zaw Tun, Dale Fisher, Sharon Salmon, Clarence C. Tam
Software Mentions: 4
Published: over 3 years ago

10.1186/s40793-020-00363-w

Reducing the arbitrary: fuzzy detection of microbial ecotones and ecosystems – focus on the pelagic environment
Cited by: 3
Author(s): Antoine Bagnaro, Federico Baltar, G. Brownstein, William G. Lee, Sergio E. Morales, Daniel W. Pritchard, Christopher D. Hepburn
Software Mentions: 4
Published: over 4 years ago

10.3389/fmicb.2021.657471

Comparative Genomics and Environmental Distribution of Large dsDNA Viruses in the Family Asfarviridae
Cited by: 15
Author(s): Sangita Karki, Mohammad Moniruzzaman, Frank O. Aylward
Software Mentions: 4
Published: over 3 years ago

10.3389/fnhum.2015.00440

Genetic network properties of the human cortex based on regional thickness and surface area measures
Cited by: 12
Author(s): Anna R. Docherty, Chelsea Sawyers, Matthew S. Panizzon, Michael C. Neale, Lisa T. Eyler, Christine Fennema-Notestine, Carol E. Franz, Chi‐Hua Chen, Linda K. McEvoy, Brad Verhulst, Ming T. Tsuang, William S. Kremen
Software Mentions: 4
Published: over 9 years ago

10.2196/27317

Analyzing Cross-country Pandemic Connectedness During COVID-19 Using a Spatial-Temporal Database: Network Analysis
Cited by: 14
Author(s): Amanda M. Y. Chu, Jacky N. L. Chan, Jenny T. Y. Tsang, Afy Tiwari, Mike K. P. So
Software Mentions: 4
Published: over 3 years ago

10.3390/ani10112123

Social Network Analysis of Agonistic Behaviour and Its Association with Economically Important Traits in Pigs
Cited by: 8
Author(s): Saif Agha, E. Fábrega, Raquel Quintanilla, Juan Pablo Sánchez
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0231832

Abundance, density, and social structure of African forest elephants (Loxodonta cyclotis) in a human-modified landscape in southwestern Gabon
Cited by: 4
Author(s): Colin M. Brand, Mireille Johnson, Lillian D. Parker, Jesús E. Maldonado, Lisa Körte, Hadrien Vanthomme, Alfonso Alonso, María José Ruiz‐López, Caitlin Wells, Nelson Ting
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0156807

Pyrosequencing Unveils Cystic Fibrosis Lung Microbiome Differences Associated with a Severe Lung Function Decline
Cited by: 23
Author(s): Giovanni Bacci, Patrizia Paganin, Loredana Lopez, Chiara Vanni, Claudia Dalmastri, Cristina Cantale, Loretta Daddiego, Gaetano Perrotta, Daniela Dolce, Patrizia Morelli, Vanessa Tuccio Guarna Assanti, A. De Alessandri, Ersilia Fiscarelli, Giovanni Taccetti, Vincenzina Lucidi, Annamaria Bevivino, Alessio Mengoni
Software Mentions: 4
Published: over 8 years ago

10.1186/1471-2164-14-728

Quantitative trait loci-dependent analysis of a gene co-expression network associated with Fusarium head blight resistance in bread wheat (Triticum aestivumL.)
Cited by: 80
Author(s): Karl G. Kugler, Gerald Siegwart, Thomas Nußbaumer, Christian Ametz, Manuel Spannagl, Barbara Steiner, Marc Lemmens, Klaus Mayer, Hermann Buerstmayr, Wolfgang Schweiger
Software Mentions: 4
Published: about 11 years ago

10.1038/s41598-020-61288-5

Forecasting risk gene discovery in autism with machine learning and genome-scale data
Cited by: 21
Author(s): Leo Brueggeman, Tanner Koomar, Jacob J. Michaelson
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0249839

A targeted e-learning approach for keeping universities open during the COVID-19 pandemic while reducing student physical interactions
Cited by: 19
Author(s): Sing Chen Yeo, Clin K Y Lai, Jacinda Tan, Joshua J. Gooley
Software Mentions: 4
Published: over 3 years ago

10.1007/s00262-020-02833-z

Early changes in the circulating T cells are associated with clinical outcomes after PD-L1 blockade by durvalumab in advanced NSCLC patients
Cited by: 14
Author(s): Elliot Naidus, Jérôme Bouquet, David Y. Oh, Timothy J. Looney, Hai Yang, Lawrence Fong, Nathan Standifer, Li Zhang
Software Mentions: 4
Published: almost 4 years ago

10.3390/brainsci11010094

Assessing the Relationship between Verbal and Nonverbal Cognitive Abilities Using Resting-State EEG Functional Connectivity
Cited by: 1
Author(s): Inna Feklicheva, Ilya Zakharov, Nadezda Chipeeva, Ekaterina Maslennikova, Svetlana Korobova, Timofey Adamovich, Victoria Ismatullina, Sergey Malykh
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0122309

Module-Based Association Analysis for Omics Data with Network Structure
Cited by: 5
Author(s): Zhi Wang, Arnab Maity, Chuhsing Kate Hsiao, Deepak Voora, Rima Kaddurah‐Daouk, Jung Ying Tzeng
Software Mentions: 4
Published: over 9 years ago

10.3389/fmicb.2020.580363

Compositions and Co-occurrence Patterns of Bacterial Communities Associated With Polymer- and ASP-Flooded Petroleum Reservoir Blocks
Cited by: 6
Author(s): Guoling Ren, Jinlong Wang, Lei Qu, Wei Li, Min Hu, Lihong Bian, Yiting Zhang, Jing Liu, Xumou Dou, Xinhong Chen, Lulu Bai, Yue Li
Software Mentions: 4
Published: almost 4 years ago

10.1186/s12859-017-1762-1

Variable selection for disease progression models: methods for oncogenetic trees and application to cancer and HIV
Cited by: 3
Author(s): Katrin Hainke, Sebastian Szugat, Roland Fried, Jörg Rahnenführer
Software Mentions: 4
Published: over 7 years ago

10.3390/ijerph16203966

Spatial-Temporal Variation of Bacterial Communities in Sediments in Lake Chaohu, a Large, Shallow Eutrophic Lake in China
Cited by: 16
Author(s): Lei Zhang, Yu Cheng, Guang Gao, Jiahu Jiang
Software Mentions: 4
Published: about 5 years ago

10.1371/journal.pone.0123569

XomAnnotate: Analysis of Heterogeneous and Complex Exome- A Step towards Translational Medicine
Cited by: 5
Author(s): Asoke K. Talukder, Shashidhar Ravishankar, Krittika Sasmal, Santhosh Gandham, Jyothsna Prabhukumar, Prahalad Achutharao, Debmalya Barh, Francesco Blasi
Software Mentions: 4
Published: over 9 years ago

10.3390/ijerph16244883

Characteristics of Bacterial Community and Function in Paddy Soil Profile around Antimony Mine and Its Response to Antimony and Arsenic Contamination
Cited by: 17
Author(s): Bocong Huang, Jian Long, Hongkai Liao, Lingfei Liu, Juan Li, Jumei Zhang, Yirong Li, Wang Xian, Rui Yang
Software Mentions: 4
Published: almost 5 years ago

10.3390/ijms22041591

Reciprocal Changes in miRNA Expression with Pigmentation and Decreased Proliferation Induced in Mouse B16F1 Melanoma Cells by l-Tyrosine and 5-Bromo-2′-Deoxyuridine
Cited by: 4
Author(s): Hernán Mauricio Rivera, Esther Natalia Muñoz, Daniel Osuna, Mauro Florez, Michael Carvajal, Luis Alberto Gómez
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-019-53966-w

Alteration of the aggregation and spatial organization of the vector of Chagas disease, Triatoma infestans, by the parasite Trypanosoma cruzi
Cited by: 8
Author(s): Stéphanie Depickère, Gonzalo Marcelo Ramírez-Ávila, Jean‐Louis Deneubourg
Software Mentions: 4
Published: about 5 years ago

10.3390/biom10060850

Can We Assume the Gene Expression Profile as a Proxy for Signaling Network Activity?
Cited by: 8
Author(s): Mehran Piran, Reza Karbalaei, Mehrdad Piran, Jehad Aldahdooh, Mehdi Mirzaie, Naser Ansari-Pour, Jing Tang, Mohieddin Jafari
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0041370

Identification of Catalytic Residues Using a Novel Feature that Integrates the Microenvironment and Geometrical Location Properties of Residues
Cited by: 12
Author(s): Lei Han, Yongjun Zhang, Jiangning Song, Ming S. Liu, Ziding Zhang
Software Mentions: 4
Published: over 12 years ago

10.1155/2015/167249

mmnet: An R Package for Metagenomics Systems Biology Analysis
Cited by: 10
Author(s): Yang Cao, Xiaofei Zheng, Fēi Li, Xiaochen Bo
Software Mentions: 4
Published: almost 10 years ago

10.1038/s41598-019-52433-w

Phonological network fluency identifies phonological restructuring through mental search
Cited by: 5
Author(s): Karl David Neergaard, Jin Luo, Chu‐Ren Huang
Software Mentions: 4
Published: about 5 years ago

10.1016/j.onehlt.2020.100177

Whence the next pandemic? The intersecting global geography of the animal-human interface, poor health systems and air transit centrality reveals conduits for high-impact spillover
Cited by: 30
Author(s): Michael Walsh, Shailendra Sawleshwarkar, Shah Monir Hossain, Siobhan M. Mor
Software Mentions: 4
Published: almost 4 years ago

10.1111/acel.13073

Global metabolic profiling to model biological processes of aging in twins
Cited by: 29
Author(s): Bryan Bunning, Kévin Contrepois, Brittany Lee‐McMullen, Gopal Krishna Dhondalay, Wenming Zhang, Dana Tupa, Olivia Raeber, Manisha Desai, Kari Nadeau, M Snyder
Software Mentions: 4
Published: about 5 years ago

10.1242/bio.049809

Single cell force profiling of human myofibroblasts reveals a biophysical spectrum of cell states
Cited by: 6
Author(s): T. B. Layton, Lynn M. Williams, Huw Colin‐York, Fiona E. McCann, Marisa Cabrita, Marc Feldmann, Cameron Brown, Weilin Xie, Marco Fritzsche, Dominic Furniss, Jagdeep Nanchahal
Software Mentions: 4
Published: almost 5 years ago

10.1186/s13059-018-1426-0

Mapping human pluripotent stem cell differentiation pathways using high throughput single-cell RNA-sequencing
Cited by: 79
Author(s): Xiaoping Han, Haide Chen, Daosheng Huang, Huidong Chen, Lijiang Fei, Chen Cheng, He Huang, Guo Cheng Yuan, Guoji Guo
Software Mentions: 4
Published: over 6 years ago

10.3389/fgene.2019.00070

Global Genetics Research in Prostate Cancer: A Text Mining and Computational Network Theory Approach
Cited by: 5
Author(s): Md. Facihul Azam, Aliyu Musa, Matthias Dehmer, Olli Yli‐Harja, Frank Emmert‐Streib
Software Mentions: 4
Published: almost 6 years ago

10.1038/s41598-019-50224-x

Network-based method for drug target discovery at the isoform level
Cited by: 6
Author(s): Ma Jun, Jenny Wang, Laleh Soltan Ghoraie, Xin Men, Linna Liu, Peng Dai
Software Mentions: 4
Published: about 5 years ago

10.1192/j.eurpsy.2021.2223

Feelings of worthlessness links depressive symptoms and parental stress: A network analysis during the COVID-19 pandemic
Cited by: 18
Author(s): Nora Skjerdingstad, Miriam S. Johnson, Sverre Urnes Johnson, Asle Hoffart, Omid V. Ebrahimi
Software Mentions: 4
Published: almost 4 years ago

10.6026/97320630013025

Elucidation of the sequential transcriptional activity in Escherichia coli using time-series RNA-seq data
Cited by: 1
Author(s): Pui Shan Wong, Kosuke Tashiro, Satoru Kuhara, Sachiyo Aburatani
Software Mentions: 4
Published: almost 8 years ago

10.3390/ijerph18094836

Categorizing IQOS-Related Twitter Discussions
Cited by: 5
Author(s): Joshua Barker, Julia Vassey, Julia Chen-Sankey, Jon-Patrick Allem, Tess Boley Cruz, Jennifer B. Unger
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0224197

A new resolution function to evaluate tree shape statistics
Cited by: 7
Author(s): Maryam Hayati, Bita Shadgar, Leonid Chindelevitch
Software Mentions: 4
Published: about 5 years ago

10.1186/s12918-017-0412-6

Detection of statistically significant network changes in complex biological networks
Cited by: 27
Author(s): Raghvendra Mall, Luigi Cerulo, Halima Bensmail, Antonio Iavarone, Michele Ceccarelli
Software Mentions: 4
Published: over 7 years ago

10.3390/genes11010031

Transcriptome-Wide Analysis Reveals Key DEGs in Flower Color Regulation of Hosta plantaginea (Lam.) Aschers
Cited by: 7
Author(s): Jingying Zhang, Changhai Sui, Yanli Wang, Shuying Liu, Huimin Liu, Zhengren Zhang, Liu Hong-zhang
Software Mentions: 4
Published: almost 5 years ago

10.1038/s41598-018-34127-x

Bacterial and fungal gut communities of Agrilus mali at different developmental stages and fed different diets
Cited by: 26
Author(s): Zhengqing Zhang, Shuo Jiao, Xiaohui Li, LI Meng-lou
Software Mentions: 4
Published: about 6 years ago

10.1371/journal.pone.0246919

Tree rows in temperate agroforestry croplands alter the composition of soil bacterial communities
Cited by: 25
Author(s): Lukas Beule, Petr Karlovský
Software Mentions: 4
Published: almost 4 years ago

10.1186/s13059-020-01964-x

Longitudinal survey of microbiome associated with particulate matter in a megacity
Cited by: 55
Author(s): Nan Qin, Peng Liang, Chunyan Wu, Guanqun Wang, Qian Xu, Xiong Xiao, Tingting Wang, Moreno Zolfo, Nicola Segata, Huanlong Qin, Rob Knight, Jack A. Gilbert, Ting Zhu
Software Mentions: 4
Published: over 4 years ago

10.1186/s12913-020-05173-x

Care coordination for severe mental health disorders: an analysis of healthcare provider patient-sharing networks and their association with quality of care in a French region
Cited by: 3
Author(s): Coralie Gandré, Laurent Beauguitte, Alexandre Lolivier, Magali Coldefy
Software Mentions: 4
Published: over 4 years ago

10.3389/fnhum.2020.00255

Aerobic Exercise Induces Functional and Structural Reorganization of CNS Networks in Multiple Sclerosis: A Randomized Controlled Trial
Cited by: 9
Author(s): Jan‐Patrick Stellmann, Adil Maarouf, Schulz Kh, Lisa Baquet, Jana Pöttgen, Stefan Patra, Iris Katharina Penner, Susanne Gellißen, Gesche Ketels, Pierre Besson, Jean Philippe Ranjeva, Maxime Guye, Guido Nolte, Andreas K. Engel, Bertrand Audoin, Christoph Heesen, Stefan M. Gold
Software Mentions: 4
Published: over 4 years ago

Projects: pypi: igraph

Papers Mentioning igraph 1,555