Ecosyste.ms: Papers

10.3389/fphys.2018.01377

Causality Analysis and Cell Network Modeling of Spatial Calcium Signaling Patterns in Liver Lobules
Cited by: 7
Author(s): Aalap Verma, Anil Noronha Antony, Babatunde A. Ogunnaike, Jan B. Hoek, Rajanikanth Vadigepalli
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2021.640731

Post-Transformation IGHV-IGHD-IGHJ Mutations in Chronic Lymphocytic Leukemia B Cells: Implications for Mutational Mechanisms and Impact on Clinical Course
Cited by: 9
Author(s): Davide Bagnara, Catherine Tang, Jennifer R. Brown, Siddha Kasar, Stacey M. Fernandes, Monica Colombo, Stefano Vergani, Andrea Nicola Mazzarello, Fabio Ghiotto, Silvia Bruno, Fortunato Morabito, R. Kanti, Jonathan E. Kolitz, Jacqueline C. Barrientos, Steven L. Allen, Franco Fais, Matthew D. Scharff, Thomas MacCarthy, Nicholas Chiorazzi
Software Mentions: 2
Published: almost 3 years ago

10.3389/fonc.2021.720400

Construction and Characterization of Long Non-Coding RNA-Associated Networks to Reveal Potential Prognostic Biomarkers in Human Lung Adenocarcinoma
Cited by: 4
Author(s): Wenting Zhou, Chen Bai, C. B. Long, Li Hu, Yanfei Zheng
Software Mentions: 2
Published: over 2 years ago

10.3389/fnins.2015.00472

Identification of Voxels Confounded by Venous Signals Using Resting-State fMRI Functional Connectivity Graph Community Identification
Cited by: 9
Author(s): Klaudius Kalcher, Roland N. Boubela, Wolfgang Huf, Christian Našel, Ewald Moser
Software Mentions: 2
Published: over 8 years ago

10.3389/fmicb.2018.02237

Diversity of Yeasts and Molds by Culture-Dependent and Culture-Independent Methods for Mycobiome Surveillance of Traditionally Prepared Dried Starters for the Production of Indian Alcoholic Beverages
Cited by: 34
Author(s): Shankar Prasad Sha, Mangesh V. Suryavanshi, Kunal Jani, Avinash Sharma, Yogesh S. Shouche, Jyoti Prakash Tamang
Software Mentions: 2
Published: over 5 years ago

10.1093/gigascience/giaa019

Comparative proteomics analysis of Tibetan hull-less barley under osmotic stress via data-independent acquisition mass spectrometry
Cited by: 17
Author(s): Yulin Wang, Zha Sang, Shaohang Xu, Qijun Xu, Xingquan Zeng, Dunzhu Jabu, Hongjun Yuan
Software Mentions: 2
Published: about 4 years ago

10.3389/fmicb.2021.632695

Evaluation of the Inflammatory Cytokines and IL-10 Network in Individuals Co-infected With Human T-Cell Lymphotropic Virus and Hepatitis C Virus (HTLV/HCV)
Cited by: 1
Author(s): Felicidade Mota Pereira, Pablo Ivan Pereira Ramos, Monique Lírio, Ajax Mercês Atta, Ilka Regina Souza de Oliveira, Fabio Carneiro Vosqui Nascimento, Marcelo Costa Silva, Bernardo Galvão–Castro, Maria Fernanda Rios Grassi
Software Mentions: 2
Published: about 3 years ago

10.1186/s41256-018-0067-x

Scientific authorship and collaboration network analysis on malaria research in Benin: papers indexed in the web of science (1996–2016)
Cited by: 15
Author(s): Roseric Azondékon, Zachary J. Harper, Fiacre Agossa, Charles M. Welzig, Susan McRoy
Software Mentions: 2
Published: about 6 years ago

10.3389/fmicb.2020.01361

Scoring Species for Synthetic Community Design: Network Analyses of Functional Core Microbiomes
Cited by: 22
Author(s): Hirokazu Toju, Masato S. Abe, Chiharu Ishii, Haruo Yoshiki, Hiroaki Fujita, Shinji Fukuda
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2019.03123

The cyl Genes Reveal the Biosynthetic and Evolutionary Origins of the Group B Streptococcus Hemolytic Lipid, Granadaene
Cited by: 13
Author(s): Blair Armistead, Christopher Whidbey, Lakshminarayan M. Iyer, Pilar Herrero-Foncubierta, Phoenicia Quach, Alí Haïdour, L. Aravind, Juan M. Cuerva, Heather B. Jaspan, Lakshmi Rajagopal
Software Mentions: 2
Published: over 4 years ago

10.1111/hex.13130

A skills network approach to physicians’ competence in shared decision making
Cited by: 4
Author(s): Levente Kriston, Pola Hahlweg, Martin Härter, Isabelle Scholl
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2017.00545

Genetic Characterization of the Exceptionally High Heat Resistance of the Non-toxic Surrogate Clostridium sporogenes PA 3679
Cited by: 16
Author(s): Robert R. Butler, Kristin M. Schill, Yun Wang, Jean‐François Pombert
Software Mentions: 2
Published: about 7 years ago

10.1186/s12961-021-00774-2

Collaboration on evidence synthesis in Africa: a network study of growing research capacity
Cited by: 2
Author(s): Jiluan Pan, Yongqi Zhong, Sarah Young, Nynke M. D. Niezink
Software Mentions: 2
Published: over 2 years ago

10.1016/j.heliyon.2020.e05069

Animating inter-organisational resilience communication: A participatory social network analysis of water governance in the UK
Cited by: 6
Author(s): Sarah Ward, Fanlin Meng, Sarah Bunney, Kegong Diao, David Butler
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2016.01285

Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System
Cited by: 84
Author(s): Adrian Ho, Roey Angel, Annelies J. Veraart, Anne Daebeler, Zhongjun Jia, Sang Yoon Kim, Frederiek‐Maarten Kerckhof, Nico Boon, Paul L. E. Bodelier
Software Mentions: 2
Published: over 7 years ago

10.3389/fmicb.2016.00570

Data-based Reconstruction of Gene Regulatory Networks of Fungal Pathogens
Cited by: 5
Author(s): Reinhard Guthke, Silvia Gerber, Theresia Conrad, Sebastian Vlaic, Saliha Durmuş, Tunahan Çakır, Fatih Erdoğan Sevilgen, Ekaterina Shelest, Jörg Linde
Software Mentions: 2
Published: about 8 years ago

10.3389/fmicb.2020.556002

Effects of Plant and Soil Characteristics on Phyllosphere and Rhizosphere Fungal Communities During Plant Development in a Copper Tailings Dam
Cited by: 15
Author(s): Tong Jia, Yushan Yao, Tingyan Guo, Ruihong Wang, Bo Chai
Software Mentions: 2
Published: over 3 years ago

10.1186/2042-6410-4-20

Sex chromosome complement regulates expression of mood-related genes
Cited by: 54
Author(s): Marianne L. Seney, Kokomma I Ekong, Ying Ding, George C. Tseng, Etienne Sibille
Software Mentions: 2
Published: over 10 years ago

10.3389/fmicb.2012.00278

Phylodynamic analysis of a viral infection network
Cited by: 7
Author(s): Teiichiro Shiino
Software Mentions: 2
Published: over 12 years ago

10.1186/s13012-017-0611-y

Rapid sociometric mapping of community health workers to identify opinion leaders using an SMS platform: a short report
Cited by: 4
Author(s): Thomas Odeny, Maya Petersen, Charles T. Muga, Jayne Lewis-Kulzer, Elizabeth A. Bukusi, Elvin Geng
Software Mentions: 2
Published: almost 7 years ago

10.1186/s13012-021-01150-y

Influence of physician networks on prescribing a new ingredient combination in heart failure: a longitudinal claim data-based study
Cited by: 2
Author(s): Christine Arnold, Jan Koetsenruijter, Johanna Forstner, Frank Peters-Klimm, Michel Wensing
Software Mentions: 2
Published: over 2 years ago

10.1186/s40249-020-00668-5

Pretreatment HIV drug resistance in adults initiating antiretroviral therapy in China, 2017
Cited by: 19
Author(s): Ran Kang, Shanshan Liang, Yanhui Ma, Shu Liang, Lin Xiao, Xinhui Zhang, Hongzhou Lu, Xun Xu, Suxin Luo, Xiaoguang Sun, Lin Chen, Jianmei He, Guohui Wu, Lingjie Liao, Hui Xing, Yiming Shao, Yuhua Ruan
Software Mentions: 2
Published: almost 4 years ago

10.3389/fmicb.2019.00234

Sperm Microbiota and Its Impact on Semen Parameters
Cited by: 110
Author(s): David Baud, Céline Pattaroni, Nicolas Vulliemoz, Vincent Castella, Benjamin J. Marsland, Miloš Stojanov
Software Mentions: 2
Published: over 5 years ago

10.3390/insects11020081

Allometry and Fighting Behaviour of a Dimorphic Stag Beetle Cyclommatus mniszechi (Coleoptera: Lucanidae)
Cited by: 9
Author(s): Zhen Yi Chen, Yu-Wei Hsu, Chung Ping Lin
Software Mentions: 2
Published: over 4 years ago

10.3389/fimmu.2018.01785

Simulation of the Dynamics of Primary Immunodeficiencies in B Cells
Cited by: 2
Author(s): Gabriel Teku, Mauno Vihinen
Software Mentions: 2
Published: almost 6 years ago

10.1155/2011/238743

Contact Heterogeneity and Phylodynamics: How Contact Networks Shape Parasite Evolutionary Trees
Cited by: 17
Author(s): Eamon B. O’Dea, Claus O. Wilke
Software Mentions: 2
Published: over 13 years ago

10.3389/fimmu.2021.644548

Delineating the Association Between Soluble CD26 and Autoantibodies Against G-Protein Coupled Receptors, Immunological and Cardiovascular Parameters Identifies Distinct Patterns in Post-Infectious vs. Non-Infection-Triggered Myalgic Encephalomyelitis/Chronic Fatigue Syndrome
Cited by: 12
Author(s): Marvin Szklarski, Helma Freitag, Siegfried Lorenz, S Becker, Franziska Sotzny, Sandra Bauer, Jelka Hartwig, Harald Heidecke, Kirsten Wittke, Claudia Kedor, Leif G. Hanitsch, Patricia Grabowski, Nuno Sepúlveda, Carmen Scheibenbogen
Software Mentions: 2
Published: about 3 years ago

10.3390/ijerph18083922

Time Granularity Impact on Propagation of Disruptions in a System-of-Systems Simulation of Infrastructure and Business Networks
Cited by: 3
Author(s): Mateusz Iwo Dubaniowski, Hans Rudolf Heinimann
Software Mentions: 2
Published: about 3 years ago

10.1093/bioinformatics/btt486

Optimizing a global alignment of protein interaction networks
Cited by: 56
Author(s): Leonid Chindelevitch, Chengyu Ma, Chung-Shou Liao, Bonnie Berger
Software Mentions: 2
Published: over 10 years ago

10.3389/fimmu.2020.01887

FcRn Overexpression Expands Diversity of the Humoral Immune Response in bFcRn Transgenic Mice
Cited by: 2
Author(s): Bence Szikora, Anita Marx, Péter K. Jani, Orsolya Pipek, Viktor Müller, István Csabai, Imre Kacskovıcs
Software Mentions: 2
Published: over 3 years ago

10.3389/fgene.2021.597983

Identification of the Key Regulators of Spina Bifida Through Graph-Theoretical Approach
Cited by: 2
Author(s): Naaila Tamkeen, Suliman Yousef Alomar, Saeed Awad M Alqahtani, Abdullah Al-jurayyan, Anam Farooqui, Safia Tazyeen, Nadeem Ahmad, Romana Ishrat
Software Mentions: 2
Published: about 3 years ago

10.1186/1746-6148-9-198

The performance of approximations of farm contiguity compared to contiguity defined using detailed geographical information in two sample areas in Scotland: implications for foot-and-mouth disease modelling
Cited by: 13
Author(s): Jessica Flood, Thibaud Porphyre, Michael J. Tildesley, Mark E. J. Woolhouse
Software Mentions: 2
Published: over 11 years ago

10.3389/fgene.2020.00659

Comprehensive Network Analysis Reveals Alternative Splicing-Related lncRNAs in Hepatocellular Carcinoma
Cited by: 8
Author(s): Junqing Wang, Xiuquan Wang, Akshay Bhat, Yixin Chen, Keli Xu, Yin‐Yuan Mo, S. Stephen Yi, Yunyun Zhou
Software Mentions: 2
Published: almost 4 years ago

10.1111/jcmm.14792

Integrative transcriptomic and proteomic analysis reveals CD9/ITGA4/PI3K‐Akt axis mediates trabecular meshwork cell apoptosis in human glaucoma
Cited by: 14
Author(s): Junwei Yan, Xiaofeng Yang, Xuefei Jiao, Xian Yang, Mingzhou Guo, Yunqing Chen, Lu Zhan, Wenshi Chen
Software Mentions: 2
Published: over 4 years ago

10.3389/fgene.2019.00064

Mouse Skull Mean Shape and Shape Robustness Rely on Different Genetic Architectures and Different Loci
Cited by: 11
Author(s): Ceferino Varón‐González, Luisa F. Pallares, Vincent Debat, Nicolas Navarro
Software Mentions: 2
Published: over 5 years ago

10.3389/fgene.2015.00307

Biological networks: the microscope of the twenty-first century?
Cited by: 0
Author(s): Frank Emmert‐Streib, Matthias Dehmer
Software Mentions: 2
Published: over 8 years ago

10.3390/ijerph18168388

The Structure of Social Support in Confidant Networks: Implications for Depression
Cited by: 4
Author(s): Liyuan Wang, Lindsay E. Young, Lynn C. Miller
Software Mentions: 2
Published: almost 3 years ago

10.3389/fcimb.2021.641174

Trypanosome KKIP1 Dynamically Links the Inner Kinetochore to a Kinetoplastid Outer Kinetochore Complex
Cited by: 10
Author(s): Lorenzo Brusini, Simon D’Archivio, Jennifer McDonald, Bill Wickstead
Software Mentions: 2
Published: about 3 years ago

10.12688/f1000research.12404.1

Exploring Vietnamese co-authorship patterns in social sciences with basic network measures of 2008-2017 Scopus data
Cited by: 19
Author(s): Tung Manh Ho, Ha Viet Nguyen, Thu‐Trang Vuong, Quang-Minh Dam, Hiep‐Hung Pham, Quan‐Hoang Vuong
Software Mentions: 2
Published: over 6 years ago

10.1186/s41544-020-00057-y

nSARS-Cov-2, pulmonary edema and thrombosis: possible molecular insights using miRNA-gene circuits in regulatory networks
Cited by: 5
Author(s): Pankaj Khurana, Apoorv Gupta, R. Sugadev, Y. K. Sharma, Rajeev K. Varshney, Lilly Ganju, Bharani Kumar
Software Mentions: 2
Published: over 3 years ago

10.1111/eva.13084

Y‐chromosome haplotypes are associated with variation in size and age at maturity in male Chinook salmon
Cited by: 11
Author(s): Garrett J. McKinney, James E. Seeb, Carita E. Pascal, Daniel E. Schindler, Sara E. Gilk‐Baumer, Lisa W. Seeb
Software Mentions: 2
Published: over 3 years ago

10.1155/2020/4323989

Korean Traditional Medicine in Treating Patients with Mild Cognitive Impairment: A Multicenter Prospective Observational Case Series
Cited by: 9
Author(s): Yujin Choi, Young Eun Kim, Ui Min Jerng, Hwan Kim, Sung Ik Lee, Ga-Na Kim, Seung-Hun Cho, Hyung Won Kang, In Chul Jung, Kyungsun Han, Jun-Hwan Lee
Software Mentions: 2
Published: about 4 years ago

10.1016/j.epidem.2015.02.008

Controlling infectious disease through the targeted manipulation of contact network structure
Cited by: 59
Author(s): M. Carolyn Gates, Mark Woolhouse
Software Mentions: 2
Published: over 8 years ago

10.1186/s12917-017-1103-7

Descriptive and network analyses of the equine contact network at an equestrian show in Ontario, Canada and implications for disease spread
Cited by: 8
Author(s): Kelsey L. Spence, Terri L. O’Sullivan, Zvonimir Poljak, Amy L. Greer
Software Mentions: 2
Published: almost 7 years ago

10.1186/s12917-016-0835-0

Emergence of Brucella suis in dogs in New South Wales, Australia: clinical findings and implications for zoonotic transmission
Cited by: 35
Author(s): Siobhan M. Mor, Anke Wiethoelter, Amanda Lee, Barbara Moloney, Daniel James, Richard Malík
Software Mentions: 2
Published: over 7 years ago

10.3390/e23091204

Granger Causality among Graphs and Application to Functional Brain Connectivity in Autism Spectrum Disorder
Cited by: 4
Author(s): Adele Ribeiro, Maciel Calebe Vidal, João Ricardo Sato, André Fujita
Software Mentions: 2
Published: over 2 years ago

10.3390/e22121383

Research on Community Detection in Complex Networks Based on Internode Attraction
Cited by: 5
Author(s): Jinfang Sheng, Cheng Liu, Long Chen, Bin Wang, Junkai Zhang
Software Mentions: 2
Published: over 3 years ago

10.1016/j.prevetmed.2018.09.004

New approaches to pharmacosurveillance for monitoring prescription frequency, diversity, and co-prescription in a large sentinel network of companion animal veterinary practices in the United Kingdom, 2014–2016
Cited by: 24
Author(s): David A. Singleton, Fernando Sánchez‐Vizcaíno, Elena Arsevska, Susan Dawson, Philip H. Jones, P. J. W. Noble, Gina Pinchbeck, Nicola Williams, Alan Radford
Software Mentions: 2
Published: over 5 years ago

10.1186/1752-0509-8-48

Historical contingency and the gradual evolution of metabolic properties in central carbon and genome-scale metabolisms
Cited by: 10
Author(s): Aditya Barve, Sayed-Rzgar Hosseini, Olivier Martin, Andreas Wagner
Software Mentions: 2
Published: about 10 years ago

10.1098/rspb.2015.2359

The social and ecological costs of an ‘over-extended' phenotype
Cited by: 22
Author(s): Lyndon Alexander Jordan, Sean M. Maguire, Hans A. Hofmann, Masanori Kohda
Software Mentions: 2
Published: over 8 years ago

10.1111/ele.12898

Contact networks structured by sex underpin sex‐specific epidemiology of infection
Cited by: 29
Author(s): Matthew J. Silk, Nicola Weber, Lucy C. Steward, David J. Hodgson, Mike Boots, Darren P. Croft, Richard J. Delahay, Robbie A. McDonald
Software Mentions: 2
Published: over 6 years ago

10.1002/ece3.7235

Roost sites of chimney swift ( <i>Chaetura pelagica</i> ) form large‐scale spatial networks
Cited by: 5
Author(s): Courtney E. le Roux, Joseph J. Nocera
Software Mentions: 2
Published: about 3 years ago

10.1007/s00442-021-04967-y

The role of habitat configuration in shaping animal population processes: a framework to generate quantitative predictions
Cited by: 8
Author(s): Peng He, Pierre‐Olivier Montiglio, Marius Somveille, Maurício Cantor, Dan Farine
Software Mentions: 2
Published: almost 3 years ago

10.1038/s41388-018-0651-z

The coordinated action of VCP/p97 and GCN2 regulates cancer cell metabolism and proteostasis during nutrient limitation
Cited by: 32
Author(s): Katarzyna Parzych, Paula Saavedra‐García, Gabriel N. Valbuena, Hibah A Al-Sadah, Mark E. Robinson, Lucy Penfold, Desislava M Kuzeva, Angie Ruiz-Tellez, Sandra Loaiza, Viktoria Holzmann, Valentina S Caputo, David C. Johnson, Martin Kaiser, Anastasios Karadimitris, Eric Lam, Éric Chevet, Niklas Feldhahn, Hector C. Keun, Holger W. Auner
Software Mentions: 2
Published: over 5 years ago

10.18632/oncotarget.10734

Distinct distributions of genomic features of the 5’ and 3’ partners of coding somatic cancer gene fusions: arising mechanisms and functional implications
Cited by: 0
Author(s): Yang Zhao, Won‐Min Song, Fan Zhang, Ming‐Ming Zhou, Weijia Zhang, Martin J. Walsh, Bin Zhang
Software Mentions: 2
Published: almost 8 years ago