Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-020-01964-x

https://doi.org/10.1186/s13059-020-01964-x

Longitudinal survey of microbiome associated with particulate matter in a megacity

Cited by: 55
Author(s): Nan Qin, Peng Liang, Chunyan Wu, Guanqun Wang, Qian Xu, Xiong Xiao, Tingting Wang, Moreno Zolfo, Nicola Segata, Huanlong Qin, Rob Knight, Jack A. Gilbert, Ting Zhu
Published: almost 5 years ago

Software Mentions 4

cran: igraph

Network Analysis and Visualization
Papers that mentioned: 1,555

cran: PERMANOVA

Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292

pypi: igraph

High performance graph data structures and algorithms
Papers that mentioned: 1,555

pypi: MetaPhlAn

MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.
Papers that mentioned: 306