10.1098/rsob.160183

Prediction and validation of protein–protein interactors from genome-wide DNA-binding data using a knowledge-based machine-learning approach
Cited by: 10
Author(s): Ashley J. Waardenberg, Homan Bernou, Mohamed Salim, Richard P. Harvey, Romaric Bouveret
Software Mentions: 6
Published: about 10 years ago

10.1111/jcmm.14651

Identification of prognosis‐related alternative splicing events in kidney renal clear cell carcinoma
Cited by: 13
Author(s): Yongdi Zuo, Liang Zhang, Weihao Tang, Wanxin Tang
Software Mentions: 6
Published: about 7 years ago

10.1155/2020/1686480

miRNA-Based Feature Classifier Is Associated with Tumor Mutational Burden in Head and Neck Squamous Cell Carcinoma
Cited by: 7
Author(s): Yu Xia, Qi Wang, Xiaolin Huang, Xinhai Yin, Jukun Song, Ke Zhao, Xiaofeng Duan
Software Mentions: 6
Published: almost 6 years ago

10.7150/jca.50413

Construction of a Glycolysis-related long noncoding RNA signature for predicting survival in endometrial cancer
Cited by: 27
Author(s): Yuan Jiang, Jie Chen, Jiwei Ling, Xiaonian Zhu, Pinping Jiang, Xiaohu Tang, Huaqiang Zhou, Rong Li
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41416-018-0236-1

Phenotype-independent DNA methylation changes in prostate cancer
Cited by: 11
Author(s): Davide Pellacani, Alastair Droop, Fiona M. Frame, Matthew Simms, Vincent M. Mann, Anne T. Collins, Connie J. Eaves, Norman J. Maitland
Software Mentions: 6
Published: about 8 years ago

10.18632/aging.102817

Identification of prognostic immune-related genes in the tumor microenvironment of endometrial cancer
Cited by: 61
Author(s): Peigen Chen, Yongtao Yang, Yu Zhang, Senwei Jiang, Xiaomao Li, Jing Wan
Software Mentions: 6
Published: over 6 years ago

10.1172/jci.insight.146242

Comorbid illnesses are associated with altered adaptive immune responses to SARS-CoV-2
Cited by: 36
Author(s): Krystle K. Q. Yu, Stephanie Fischinger, Malisa T. Smith, Caroline Atyeo, Deniz Cizmeci, Caitlin R Wolf, Erik D. Layton, Jennifer K. Logue, Melissa S. Aguilar, Kiel Shuey, Carolin Loos, Jingyou Yu, Nicholas Franko, Robert Y. Choi, Anna Wald, Dan H. Barouch, David M. Koelle, Douglas A. Lauffenburger, Helen Y. Chu, Galit Alter, Chetan Seshadri
Software Mentions: 6
Published: over 5 years ago

10.1172/jci.insight.140380

Patient ancestry significantly contributes to molecular heterogeneity of systemic lupus erythematosus
Cited by: 41
Author(s): Michelle D. Catalina, Prathyusha Bachali, Anthony E. T. Yeo, Nicholas S. Geraci, Michelle Petri, Amrie C. Grammer, Peter E. Lipsky
Software Mentions: 6
Published: about 6 years ago

10.3934/Neuroscience.2021016

ISOMAP and machine learning algorithms for the construction of embedded functional connectivity networks of anatomically separated brain regions from resting state fMRI data of patients with Schizophrenia
Cited by: 11
Author(s): Ioannis Gallos, Kostakis Gkiatis, George K. Matsopoulos, Constantinos Siettos
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12935-020-01635-8

A multi-parametric prognostic model based on clinical features and serological markers predicts overall survival in non-small cell lung cancer patients with chronic hepatitis B viral infection
Cited by: 4
Author(s): Shulin Chen, Hanqing Huang, Yijun Liu, Changchun Lai, Songguo Peng, Lei Zhou, Hao Chen, Yi‐Wei Xu, Xia He
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12935-020-01249-0

Prognostic role of alternative splicing events in head and neck squamous cell carcinoma
Cited by: 3
Author(s): Yanni Ding, Guang Feng, Min Yang
Software Mentions: 6
Published: over 6 years ago

10.1186/s40644-021-00408-4

High resolution MRI-based radiomic nomogram in predicting perineural invasion in rectal cancer
Cited by: 17
Author(s): Yan-Song Yang, Yong-Juan Qiu, Gengbin Zheng, Hai‐Peng Gong, Yubin Ge, Yifei Zhang, Feng Feng, Yuetao Wang
Software Mentions: 6
Published: over 5 years ago

10.1001/jamanetworkopen.2020.20664

Estimating Nonfatal Gunshot Injury Locations With Natural Language Processing and Machine Learning Models
Cited by: 10
Author(s): Susan T. Parker
Software Mentions: 6
Published: almost 6 years ago

10.1002/hbm.24554

Detection of mild cognitive impairment in a community‐dwelling population using quantitative, multiparametric MRI‐based classification
Cited by: 6
Author(s): Mark J. R. J. Bouts, Jeroen van der Grond, Meike W. Vernooij, Marisa Koini, Tijn M. Schouten, Frank de Vos, Rogier A. Feis, Lotte G.M. Cremers, Anita Lechner, Reinhold Schmidt, Mark de Rooij, Wiro J. Niessen, M. Arfan Ikram, Serge A.R.B. Rombouts
Software Mentions: 6
Published: over 7 years ago

10.18632/aging.103743

Identification of subtype-specific genes signature by WGCNA for prognostic prediction in diffuse type gastric cancer
Cited by: 6
Author(s): Qi Zhou, Liqun Zhou, Shihao Li, Yi‐Wu Yuan, Li Liu, Jinliang Wang, Deng-Zhong Wu, You Wu, Lin Xin
Software Mentions: 6
Published: about 6 years ago

10.1002/cam4.3859

Identification of an individualized RNA binding protein‐based prognostic signature for diffuse large B‐cell lymphoma
Cited by: 6
Author(s): Yuanyang Xie, Ximei Luo, Haiqing He, Tao Pan, Yizi He
Software Mentions: 6
Published: over 5 years ago

10.1002/cam4.4115

Development and validation of a <i>PBRM1</i>‐associated immune prognostic model for clear cell renal cell carcinoma
Cited by: 5
Author(s): Jiayi Chen, Chunlin Yao, Nan Qiao, Yangyang Ge, Jianhua Li, Yun Lin, Shanglong Yao
Software Mentions: 6
Published: about 5 years ago

10.1016/j.gpb.2016.03.006

Comparison of Cox Model Methods in A Low-dimensional Setting with Few Events
Cited by: 15
Author(s): Francisco Ojeda, Christian Müller, Daniela Börnigen, David‐Alexandre Trégouët, Arne Schillert, Matthias Heinig, Tanja Zeller, Renate B. Schnabel
Software Mentions: 6
Published: about 10 years ago

10.3390/microorganisms9020252

Relationships among Fecal, Air, Oral, and Tracheal Microbial Communities in Pigs in a Respiratory Infection Disease Model
Cited by: 7
Author(s): Robert Valeris-Chacín, Amanda Sponheim, Eduardo Fano, Richard E. Isaacson, Randall S. Singer, Joel Nerem, Fernando Leite, Maria Pieters
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2021.657002

Prognostic Value of Eight-Gene Signature in Head and Neck Squamous Carcinoma
Cited by: 20
Author(s): Baoling Liu, Qiang Su, Jianhua Ma, Cheng Chen, Limin Wang, Fengyuan Che, Xueyuan Heng
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2019.01064

Radiomic Nomogram Improves Preoperative T Category Accuracy in Locally Advanced Laryngeal Carcinoma
Cited by: 21
Author(s): Fei Wang, Bin Zhang, Xiangjun Wu, Lizhi Liu, Fang Jin, Justin Chen, Minmin Li, Zhuozhi Chen, Yueyue Li, Di Dong, Jie Tian, Shuixing Zhang
Software Mentions: 6
Published: almost 7 years ago

10.1002/1878-0261.12707

Classification of diffuse lower‐grade glioma based on immunological profiling
Cited by: 40
Author(s): Fan Wu, Zhiliang Wang, Kuan‐Yu Wang, Guanzhang Li, Rui‐Chao Chai, Yuqing Liu, Haiyan Jiang, You Zhai, Yuemei Feng, Zheng Zhao, Wei Zhang
Software Mentions: 6
Published: over 6 years ago

10.1002/1878-0261.12351

GeneExpressScore Signature: a robust prognostic and predictive classifier in gastric cancer
Cited by: 18
Author(s): Xiaoqiang Zhu, Xianglong Tian, Tiantian Sun, Chuangqi Yu, Yingying Cao, Tingting Yan, Chaoqin Shen, Yanwei Lin, Jing–Yuan Fang, Jie Hong, Haoyan Chen
Software Mentions: 6
Published: about 8 years ago

10.15252/msb.20167435

Transcriptional regulatory networks underlying gene expression changes in Huntington's disease
Cited by: 51
Author(s): Seth A. Ament, Jocelynn Pearl, Jeffrey P. Cantle, Robert M. Bragg, Peter J. Skene, Sydney R. Coffey, Dani E Bergey, Vanessa C. Wheeler, Marcy E. MacDonald, Nitin S. Baliga, Jim Rosinski, Leroy Hood, Jeffrey B. Carroll, Nathan D. Price
Software Mentions: 6
Published: over 8 years ago

10.3389/fonc.2020.572708

Hematopoietic Gene Expression Regulation Through m6A Methylation Predicts Prognosis in Stage III Colorectal Cancer
Cited by: 1
Author(s): Zheng Zhou, Shaobo Mo, Ruiqi Gu, Weixing Dai, Xinhui Zou, Lingyu Han, Long Zhang, Renjie Wang, Guoxiang Cai
Software Mentions: 6
Published: about 6 years ago

10.3390/v13020169

The Ecology of Nipah Virus in Bangladesh: A Nexus of Land-Use Change and Opportunistic Feeding Behavior in Bats
Cited by: 39
Author(s): Clifton McKee, Ariful Islam, Stephen P. Luby, Henrik Salje, Peter J. Hudson, Raina K. Plowright, Emily S. Gurley
Software Mentions: 6
Published: over 5 years ago

10.1186/s13071-018-2960-z

Detection of Plasmodium berghei infected Anopheles stephensi using near-infrared spectroscopy
Cited by: 26
Author(s): Pedro M. Esperança, Andrew M. Blagborough, Dari F. Da, Floyd E. Dowell, Thomas S. Churcher
Software Mentions: 6
Published: over 8 years ago

10.7717/peerj.9621

Identification and validation of prognostic signature for breast cancer based on genes potentially involved in autophagy
Cited by: 11
Author(s): Shanliang Zhong, Huanwen Chen, Su-Jin Yang, Jifeng Feng, Siying Zhou
Software Mentions: 6
Published: about 6 years ago

10.7717/peerj.8827

Identification of a three-m6A related gene risk score model as a potential prognostic biomarker in clear cell renal cell carcinoma
Cited by: 21
Author(s): Yiqiao Zhao, Zijia Tao, Xiaonan Chen
Software Mentions: 6
Published: over 6 years ago

10.3389/fonc.2020.01496

Development and Validation of a Clinical Prognostic Model Based on Immune-Related Genes Expressed in Clear Cell Renal Cell Carcinoma
Cited by: 11
Author(s): Shengxiang Ren, Wei Wang, Hanyu Shen, Chenlin Zhang, Haiyan Hao, Mengjing Sun, Yingjing Wang, Xiaojing Zhang, Bing Lu, Chen Chen, Ziheng Wang
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pcbi.1008315

Leveraging functional annotation to identify genes associated with complex diseases
Cited by: 13
Author(s): Wei Liu, Mo Li, Wenfeng Zhang, Geyu Zhou, Weijie Xing, Jiawei Wang, Qiongshi Lu, Hongyu Zhao
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pcbi.1009197

Multidimensional analysis of immune responses identified biomarkers of recent Mycobacterium tuberculosis infection
Cited by: 1
Author(s): Tessa Lloyd, Pia Steigler, Cheleka A M Mpande, Virginie Rozot, Boitumelo Mosito, Constance Schreuder, Timothy D. Reid, Mark Hatherill, Thomas J. Scriba, Francesca Little, Elisa Nemes
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pcbi.1008831

Accuracy in the prediction of disease epidemics when ensembling simple but highly correlated models
Cited by: 9
Author(s): Denis A. Shah, E. D. De Wolf, Pierce A. Paul, L. V. Madden
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pcbi.1007337

Identification of gene specific cis-regulatory elements during differentiation of mouse embryonic stem cells: An integrative approach using high-throughput datasets
Cited by: 15
Author(s): M. Vijayabaskar, Debbie K. Goode, Nadine Obier, Monika Lichtinger, Amber M.L. Emmett, Fatin N Zainul Abidin, Nisar Ahmed Shar, Rebecca Hannah, Salam A. Assi, Michael Lie-A-Ling, Berthold Göttgens, Georges Lacaud, Valérie Kouskoff, Constanze Bonifer, David R. Westhead
Software Mentions: 6
Published: almost 7 years ago

10.3389/fonc.2021.732447

Comprehensive Molecular Analyses of a Six-Gene Signature for Predicting Late Recurrence of Hepatocellular Carcinoma
Cited by: 7
Author(s): Yuyuan Zhang, Xinwei Han, Xin Li, Long Liu, Libo Wang, Xinwei Han, Zhen Li
Software Mentions: 6
Published: about 5 years ago

10.1155/2021/9943465

Construction and Validation of an Autophagy-Related Prognostic Model for Osteosarcoma Patients
Cited by: 2
Author(s): Qian-Nan Hu, Ting Lei, Pengfei Lei, Yihe Hu
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2021.631803

Prognostic and Predictive Value of m6A “Eraser” Related Gene Signature in Gastric Cancer
Cited by: 14
Author(s): Xin Xu, Enbo Zhou, Jun Zheng, Chihao Zhang, Yinghua Zou, Jiayun Lin, Jiwei Yu
Software Mentions: 6
Published: over 5 years ago

10.1155/2021/6693219

A Novel 8-Gene Prognostic Signature for Survival Prediction of Uveal Melanoma
Cited by: 3
Author(s): Zhongjun Tang, Kebo Cai
Software Mentions: 6
Published: about 5 years ago

10.3389/fonc.2021.592211

An Immune-Related Gene Pairs Signature Predicts Prognosis and Immune Heterogeneity in Glioblastoma
Cited by: 1
Author(s): Nijia Zhang, Ming Ge, Tao Jiang, Xiaoxia Peng, Hailang Sun, Qi Xiang, Zhewei Zou, Dapeng Li
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2021.580886

Radiomics Nomogram for Identifying Sub-1 cm Benign and Malignant Thyroid Lesions
Cited by: 7
Author(s): Xinxin Wu, Jingjing Li, Yakui Mou, Yao Yao, Jingjing Cui, Ning Mao, Xuejiao Song
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2021.675545

Identification of a Ferroptosis-Related LncRNA Signature as a Novel Prognosis Model for Lung Adenocarcinoma
Cited by: 52
Author(s): Lu Lu, Leping Liu, Qiangqiang Zhao, Rong Gui, Qiancheng Zhao
Software Mentions: 6
Published: over 5 years ago

10.3389/fnins.2019.01203

Multimodal Integration of Brain Images for MRI-Based Diagnosis in Schizophrenia
Cited by: 25
Author(s): Raymond Salvador, Erick Jorge Canales-Rodríguez, Amalia Guerrero-Pedraza, Salvador Sarró, Diana Tordesillas‐Gutiérrez, Teresa Maristany, Benedicto Crespo‐Facorro, Peter McKenna, Edith Pomarol‐Clotet
Software Mentions: 6
Published: almost 7 years ago

10.3389/fneur.2019.00844

Bifurcation Configuration Is an Independent Risk Factor for Aneurysm Rupture Irrespective of Location
Cited by: 17
Author(s): Qinglin Liu, Peng Jiang, Yuhua Jiang, Shaolin Li, Huijian Ge, Hengwei Jin, Youxiang Li
Software Mentions: 6
Published: about 7 years ago

10.1186/s13756-020-00825-3

Risk prediction models to guide antibiotic prescribing: a study on adult patients with uncomplicated upper respiratory tract infections in an emergency department
Cited by: 4
Author(s): Joshua Wong, Aung-Hein Aung, Weixiang Lian, David C. Lye, Chee-Kheong Ooi, Angela Chow
Software Mentions: 6
Published: almost 6 years ago

10.3389/fninf.2018.00036

Unraveling the Complexity of Amyotrophic Lateral Sclerosis Survival Prediction
Cited by: 32
Author(s): Stephen R. Pfohl, Renaid B. Kim, Grant Coan, Cassie S. Mitchell
Software Mentions: 6
Published: over 8 years ago

10.3389/fmolb.2020.620765

Development and External Validation of a Novel Immune Checkpoint–Related Gene Signature for Prediction of Overall Survival in Hepatocellular Carcinoma
Cited by: 11
Author(s): Enfa Zhao, Shimin Chen, Yujie Dang
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0153355

Immune Profiles to Predict Response to Desensitization Therapy in Highly HLA-Sensitized Kidney Transplant Candidates
Cited by: 20
Author(s): Julie M. Yabu, Janet Siebert, Holden T. Maecker
Software Mentions: 6
Published: over 10 years ago

10.3389/fmolb.2021.607090

Identification of an IRGP Signature to Predict Prognosis and Immunotherapeutic Efficiency in Bladder Cancer
Cited by: 12
Author(s): Lianghao Zhang, Long‐Qing Li, Yonghao Zhan, Zhaowei Zhu, Xuepei Zhang
Software Mentions: 6
Published: over 5 years ago

10.3390/ijms22031189

Comparison of Proteomic Technologies for Blood-Based Detection of Colorectal Cancer
Cited by: 7
Author(s): Megha Bhardwaj, Tobias Terzer, Petra Schrotz‐King, Hermann Brenner
Software Mentions: 6
Published: over 5 years ago

10.3389/fmolb.2016.00026

biosigner: A New Method for the Discovery of Significant Molecular Signatures from Omics Data
Cited by: 46
Author(s): Philippe Rinaudo, Samia Boudah, Christophe Junot, Etienne Thévenot
Software Mentions: 6
Published: over 10 years ago

10.3389/fmolb.2021.636991

Identifying Dendritic Cell–Related Genes Through a Co-Expression Network to Construct a 12-Gene Risk-Scoring Model for Predicting Hepatocellular Carcinoma Prognosis
Cited by: 7
Author(s): Chao-Yuan Huang, Xiaotao Jiang, Yuancheng Huang, Lina Zhao, Peiwu Li, Fengbin Liu
Software Mentions: 6
Published: over 5 years ago

10.3389/fmolb.2021.615084

Development of a Machine Learning-Based Autophagy-Related lncRNA Signature to Improve Prognosis Prediction in Osteosarcoma Patients
Cited by: 12
Author(s): Guangzhi Zhang, Zhi-Xi Wu, Chunying Li, Enhui Ren, Wenhua Yuan, Yajun Deng, Qiqi Xie
Software Mentions: 6
Published: over 5 years ago

10.3389/fmicb.2019.02120

Incorporating Statistical Test and Machine Intelligence Into Strain Typing of Staphylococcus haemolyticus Based on Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry
Cited by: 18
Author(s): Chia-Ru Chung, Hsin-Yao Wang, Frank Lien, Yi-Ju Tseng, Chun‐Hsien Chen, Tzong-Yi Lee, Tsui Ping Liu, Jorng-Tzong Horng, Jang Jih Lu
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pone.0192859

18F-fluorodeoxyglucose positron-emission tomography (FDG-PET)-Radiomics of metastatic lymph nodes and primary tumor in non-small cell lung cancer (NSCLC) – A prospective externally validated study
Cited by: 54
Author(s): Sara Carvalho, Ralph T.H. Leijenaar, Esther G.C. Troost, Janita E. van Timmeren, Cary Oberije, Wouter van Elmpt, Lioe-Fee de Geus-Oei, Johan Bussink
Software Mentions: 6
Published: over 8 years ago

10.3389/fmicb.2020.610009

Evidence That Microorganisms at the Animal-Water Interface Drive Sea Star Wasting Disease
Cited by: 28
Author(s): Citlalli A Aquino, Ryan M Besemer, Christopher M. DeRito, Jan Kocian, Ian Porter, Peter T. Raimondi, Jordan E Rede, Lauren M. Schiebelhut, Jed P. Sparks, John P. Wares, Ian Hewson
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0217536

Challenges and caveats of a multi-center retrospective radiomics study: an example of early treatment response assessment for NSCLC patients using FDG-PET/CT radiomics
Cited by: 30
Author(s): Janita E. van Timmeren, Sara Carvalho, Ralph T.H. Leijenaar, Esther G.C. Troost, Wouter van Elmpt, Dirk De Ruysscher, Jean-Pierre Muratet, Fabrice Denis, T. Schimek-Jasch, Ursula Nestle, Arthur Jochems, Henry C. Woodruff, Cary Oberije, Philippe Lambin
Software Mentions: 6
Published: over 7 years ago

10.1371/journal.pone.0204819

Sensor-based measurement of critical care nursing workload: Unobtrusive measures of nursing activity complement traditional task and patient level indicators of workload to predict perceived exertion
Cited by: 20
Author(s): Michael A. Rosen, Aimee Dietz, Nam Lee, I-Jeng Wang, J. Markowitz, Rhonda Wyskiel, Ting Yang, Carey E. Priebe, Adam Sapirstein, Ayşe P. Gürses, Peter J. Pronovost
Software Mentions: 6
Published: almost 8 years ago

10.3389/fgene.2020.00992

Identification of the Six-RNA-Binding Protein Signature for Prognosis Prediction in Bladder Cancer
Cited by: 13
Author(s): Yucai Wu, Yi Liu, Anbang He, Bao Guan, Shiming He, Cuijian Zhang, Zhengjun Kang, Yanqing Gong, Xuesong Li, Liqun Zhou
Software Mentions: 6
Published: about 6 years ago

10.1038/s41598-020-68343-1

Performance prediction of crosses in plant breeding through genotype by environment interactions
Cited by: 13
Author(s): Javad Ansarifar, Faezeh Akhavizadegan, Lizhi Wang
Software Mentions: 6
Published: about 6 years ago

10.3390/cancers13133330

Differential Regulation of Lacto-/Neolacto- Glycosphingolipid Biosynthesis Pathway Reveals Transcription Factors as Potential Candidates in Triple-Negative Breast Cancer
Cited by: 1
Author(s): Rui-chao Zeng, Ahmed Mohamed, Kum Kum Khanna, Michelle M. Hill
Software Mentions: 6
Published: over 5 years ago

10.3389/fnagi.2021.602781

Exploring the Key Genes and Identification of Potential Diagnosis Biomarkers in Alzheimer’s Disease Using Bioinformatics Analysis
Cited by: 20
Author(s): Wuhan Yu, Weihua Yu, Yan Yang, Yang Lü
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2020.596087

Identification of a Novel Glycolysis-Related Gene Signature for Predicting Breast Cancer Survival
Cited by: 18
Author(s): Dai Zhang, Yi Zheng, Shuanying Yang, Yiche Li, Meng Wang, Jia Yao, Yao Deng, Na Li, Bajin Wei, Ying Wu, Yuyao Zhu, Hongtao Li, Zhijun Dai
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2019.01485

The Potential of Radiomics Nomogram in Non-invasively Prediction of Epidermal Growth Factor Receptor Mutation Status and Subtypes in Lung Adenocarcinoma
Cited by: 31
Author(s): Wei Zhao, Ying Wu, Yanan Xu, Yingli Sun, Pan Gao, Min Tan, Wenrui Ma, Cheng Li, Liang Jin, Yanqing Hua, Jun Liu, Ming Li
Software Mentions: 6
Published: over 6 years ago

10.3390/cells10061459

A Distinct Faecal Microbiota and Metabolite Profile Linked to Bowel Habits in Patients with Irritable Bowel Syndrome
Cited by: 19
Author(s): Bani Ahluwalia, Cristina Iribarren, Maria K. Magnusson, Johanna Sundin, Egbert Clevers, Otto Savolainen, Alastair B. Ross, Hans Törnblom, Magnus Simrén, Lena Öhman
Software Mentions: 6
Published: over 5 years ago

10.1038/s42003-021-01868-x

Distribution of microRNA profiles in pre-clinical and clinical forms of murine and human prion disease
Cited by: 8
Author(s): Lesley Cheng, Camelia Quek, Xia Li, Shayne A. Bellingham, Laura J Ellett, Mitch Shambrook, Saima Zafar, Inga Zerr, Victoria Lawson, Andrew F. Hill
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-018-37802-1

The transdiagnostic structure of mental effort avoidance
Cited by: 27
Author(s): Edward H. Patzelt, Wouter Kool, Alexander J. Millner, Samuel J. Gershman
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-021-97891-3

Soft threshold partial least squares predicts the survival fraction of malignant glioma cells against different concentrations of methotrexate’s derivatives
Cited by: 0
Author(s): Tahir Mehmood, Mudassir Iqbal
Software Mentions: 6
Published: about 5 years ago

10.3389/fonc.2020.580513

A Novel RNA Binding Protein-Related Prognostic Signature for Hepatocellular Carcinoma
Cited by: 25
Author(s): Yongbiao Huang, Sheng Chen, Qin Wan, Yali Wang, Long Li, Qianxia Li, Xianglin Yuan
Software Mentions: 6
Published: almost 6 years ago

10.12688/f1000research.17149.2

Hub genes in a pan-cancer co-expression network show potential for predicting drug responses
Cited by: 0
Author(s): Francisco Azuaje, Tony Kaoma, Céline Jeanty, Petr V. Nazarov, Arnaud Muller, Sang Yoon Kim, Gunnar Dittmar, Anna Golebiewska, Simone P. Niclou
Software Mentions: 6
Published: over 7 years ago

10.1002/sim.6782

Review and evaluation of penalised regression methods for risk prediction in low‐dimensional data with few events
Cited by: 208
Author(s): Menelaos Pavlou, Gareth Ambler, Shaun Seaman, Maria De Iorio, Rumana Omar
Software Mentions: 6
Published: almost 11 years ago

10.1016/j.tube.2019.101859

Distinct serum biosignatures are associated with different tuberculosis treatment outcomes
Cited by: 22
Author(s): Katharina Ronacher, Novel N. Chegou, Léanie Kleynhans, Joel Fleury Djoba Siawaya, Nelita du Plessis, André G. Loxton, Elizna Maasdorp, Gerard Tromp, Martin Kidd, Kim Stanley, Magdalena Kriel, Ângela Menezes, Andrea Gutschmidt, Gian D. van der Spuy, Robin M. Warren, Reynaldo Dietze, Alphonse Okwera, Bonnie Thiel, John T. Belisle, Jacqueline M. Cliff, W. Henry Boom, John L. Johnson, Paul D. van Helden, Hazel M. Dockrell, Gerhard Walzl
Software Mentions: 6
Published: about 7 years ago

10.3390/s19204496

Simultaneous Assessment of Urinary and Fecal Volatile Organic Compound Analysis in De Novo Pediatric IBD
Cited by: 9
Author(s): Sofia el Manouni el Hassani, Sofie Bosch, Jesse P. M. Lemmen, Marina Brizzio Brentar, Ibrahim Ayada, Alfian Wicaksono, James A. Covington, Marc A. Benninga, Nanne K. H. de Boer, Tim G. J. de Meij
Software Mentions: 6
Published: almost 7 years ago

10.3389/fonc.2021.642563

A Novel Five-Gene Signature for Prognosis Prediction in Hepatocellular Carcinoma
Cited by: 14
Author(s): Lisa Su, Genhao Zhang, Xiangdong Kong
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-018-23494-0

Methylation-to-Expression Feature Models of Breast Cancer Accurately Predict Overall Survival, Distant-Recurrence Free Survival, and Pathologic Complete Response in Multiple Cohorts
Cited by: 6
Author(s): Jeffrey Thompson, Brock C. Christensen, Carmen J. Marsit
Software Mentions: 6
Published: over 8 years ago

10.3389/fonc.2021.636479

An Immune Cell-Based Signature Associating With EMT Phenotype Predicts Postoperative Overall Survival of ESCC
Cited by: 4
Author(s): Hongliang Yu, Dayong Gu, Chao Yang, Jianhua Xu, Feng Yan, Xu He
Software Mentions: 6
Published: over 5 years ago

10.1155/2015/178572

A Systematic Evaluation of Feature Selection and Classification Algorithms Using Simulated and Real miRNA Sequencing Data
Cited by: 7
Author(s): Sheng Yang, Li Guo, Fang Shao, Yang Zhao, Feng Chen
Software Mentions: 6
Published: almost 12 years ago

10.1038/s41598-018-21851-7

Elastic net regularized regression for time-series analysis of plasma metabolome stability under sub-optimal freezing condition
Cited by: 15
Author(s): Gerard Bryan Gonzales, Sarah De Saeger
Software Mentions: 6
Published: over 8 years ago

10.1038/s42003-021-01673-6

Glacial melt disturbance shifts community metabolism of an Antarctic seafloor ecosystem from net autotrophy to heterotrophy
Cited by: 11
Author(s): Ulrike Braeckman, Francesca Pasotti, Ralf Hoffmann, Susana Vázquez, Angela Wulff, Irene R Schloss, Ulrike Falk, Dolores Deregibus, Nene Lefaible, Anders Torstensson, Adil Y. Al-Handal, Frank Wenzhöfer, Ann Vanreusel
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-82474-z

Assessing biophysical and socio-economic impacts of climate change on regional avian biodiversity
Cited by: 8
Author(s): Simon Kapitza, Pham Van Ha, Tom Kompas, Nick Golding, Natasha C. R. Cadenhead, Payal Bal, Brendan A. Wintle
Software Mentions: 6
Published: over 5 years ago

10.1093/g3journal/jkab248

Harnessing multivariate, penalized regression methods for genomic prediction and QTL detection of drought-related traits in grapevine
Cited by: 5
Author(s): Charlotte Brault, Agnès Doligez, Le Cunff, Aude Coupel‐Ledru, Thierry Simonneau, Julien Chiquet, Patrice This, Timothée Flutre
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-021-81728-0

The impact of tinnitus distress on cognition
Cited by: 21
Author(s): Patrick Neff, Jorge Simões, S Psatha, Nyamaa Amarjargal, Benjamin Boecking, Leonie Rausch, Juliane Dettling-Papargyris, Christine Funk, Petra Brüeggemann, Birgit Mazurek
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-018-21161-y

Combinatory use of distinct single-cell RNA-seq analytical platforms reveals the heterogeneous transcriptome response
Cited by: 16
Author(s): Yukie Kashima, Ayako Suzuki, Ying Liu, Masahito Hosokawa, Hiroko Matsunaga, Masamitsu Shirai, Kohji Arikawa, Sumio Sugano, Takashi Kohno, Haruko Takeyama, Katsuya Tsuchihara, Yutaka Suzuki
Software Mentions: 6
Published: over 8 years ago

10.1186/s13059-020-01953-0

ncHMR detector: a computational framework to systematically reveal non-classical functions of histone modification regulators
Cited by: 7
Author(s): Shengen Hu, Dawei Huo, Zhaowei Yu, Yujie Chen, Jing Liu, Lin Liu, Xudong Wu, Yong Zhang
Software Mentions: 6
Published: over 6 years ago

10.3389/fonc.2020.01121

Radiomics Based on CECT in Differentiating Kimura Disease From Lymph Node Metastases in Head and Neck: A Non-Invasive and Reliable Method
Cited by: 7
Author(s): Ying Zhang, Sheng-Bo Yu, Li Zhang, Lillian Kang
Software Mentions: 6
Published: about 6 years ago

10.1038/s41598-021-83338-2

Inclusion of genetic variants in an ensemble of gradient boosting decision trees does not improve the prediction of citalopram treatment response
Cited by: 6
Author(s): Jason Shumake, Travis T. Mallard, John E. McGeary, Christopher G. Beevers
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-019-54447-w

A genomic predictor of lifespan in vertebrates
Cited by: 43
Author(s): Benjamin Mayne, Oliver Berry, Campbell R. Davies, Jessica Farley, Simon Jarman
Software Mentions: 6
Published: almost 7 years ago

10.3389/fonc.2021.725181

Identification of N6-Methylandenosine-Related lncRNAs for Subtype Identification and Risk Stratification in Gastric Adenocarcinoma
Cited by: 9
Author(s): Yuancheng Huang, Zehong Yang, Chao-Yuan Huang, Xiaotao Jiang, Yanhua Yan, Kunhai Zhuang, Yi Wen, Fengbin Liu, Peiwu Li
Software Mentions: 6
Published: about 5 years ago

10.1002/clc.23532

Predicting <scp>90 day</scp> acute heart failure readmission and death using machine <scp>learning‐supported</scp> decision analysis
Cited by: 20
Author(s): FarnazBabaie Sarijaloo, Jaeyoung Park, Xiang Zhong, Anita Wokhlu
Software Mentions: 6
Published: almost 6 years ago

10.1155/2020/8974793

Comprehensive Analysis of Tumor-Infiltrating Immune Cells and Relevant Therapeutic Strategy in Esophageal Cancer
Cited by: 14
Author(s): Guangrong Lu, Liping Chen, Shengjie Wu, Yuao Feng, Tiesu Lin
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-021-88440-z

Machine-learning based prediction of Cushing’s syndrome in dogs attending UK primary-care veterinary practice
Cited by: 7
Author(s): Imogen Schofield, David Brodbelt, Noel Kennedy, Stijn Niessen, David Church, Rebecca Geddes, Dan G. O’Neill
Software Mentions: 6
Published: over 5 years ago

10.1186/s40246-021-00323-6

An ensemble of the iCluster method to analyze longitudinal lncRNA expression data for psoriasis patients
Cited by: 2
Author(s): Suyan Tian, Chi Wang
Software Mentions: 6
Published: over 5 years ago

10.1186/s12711-016-0219-8

Genome-wide prediction using Bayesian additive regression trees
Cited by: 35
Author(s): Patrik Waldmann
Software Mentions: 6
Published: over 10 years ago

10.3390/diagnostics11050887

A Comprehensive Machine Learning Framework for the Exact Prediction of the Age of Onset in Familial and Sporadic Alzheimer’s Disease
Cited by: 3
Author(s): Jorge I. Vélez, Luiggi A. Samper, Mauricio Arcos-Holzinger, Lady G. Espinosa, Mario A. Isaza-Ruget, Francisco Lopera, Mauricio Arcos‐Burgos
Software Mentions: 6
Published: over 5 years ago

10.1038/s41598-021-87982-6

Association among extracellular superoxide dismutase genotype, plasma concentration, and comorbidity in the very old and centenarians
Cited by: 7
Author(s): Takashi Sasaki, Yukiko Abe, M. Takayama, Tetsuo Adachi, Hideyuki Okano, Nobuyoshi Hirose, Yasumichi Arai
Software Mentions: 6
Published: over 5 years ago

10.3389/fonc.2020.574228

Radiomic Feature-Based Predictive Model for Microvascular Invasion in Patients With Hepatocellular Carcinoma
Cited by: 18
Author(s): Mu He, Zhang Peng, Xiao Ma, Baochun He, Chihua Fang, Fucang Jia
Software Mentions: 5
Published: almost 6 years ago

10.1038/s41598-019-48488-4

Predicting Breast Cancer in Breast Imaging Reporting and Data System (BI-RADS) Ultrasound Category 4 or 5 Lesions: A Nomogram Combining Radiomics and BI-RADS
Cited by: 75
Author(s): Weiquan Luo, Qing-xiu Huang, Xiaowen Huang, Hang-Tong Hu, Fuqiang Zeng, Wei Wang
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-018-25679-z

A machine learning model with human cognitive biases capable of learning from small and biased datasets
Cited by: 38
Author(s): Hidetaka Taniguchi, Hiroshi Satō, Tomohiro Shirakawa
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-019-44254-8

Honey bee predisposition of resistance to ubiquitous mite infestations
Cited by: 17
Author(s): Bart J. G. Broeckx, Lina De Smet, T. Blacquière, Kevin Maebe, Mikalai Khalenkow, Mario Van Poucke, Bjørn Dahle, Peter Neumann, Kim B. Nguyen, Guy Smagghe, Dieter Deforce, Filip Van Nieuwerburgh, Luc Peelman, Dirk C. de Graaf
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-019-46718-3

Pan-Renal Cell Carcinoma classification and survival prediction from histopathology images using deep learning
Cited by: 124
Author(s): Sairam Tabibu, P. K. Vinod, C. V. Jawahar
Software Mentions: 5
Published: about 7 years ago

10.1534/g3.118.200563

Comparative Genomics Approaches Accurately Predict Deleterious Variants in Plants
Cited by: 32
Author(s): Thomas J. Y. Kono, Lei Li, Ching-Hua Shih, Paul Hoffman, Peter L. Morrell, Justin C. Fay
Software Mentions: 5
Published: about 8 years ago