pypi: glmnet | Projects | Ecosyste.ms: Papers

10.7150/jca.50413

Construction of a Glycolysis-related long noncoding RNA signature for predicting survival in endometrial cancer
Cited by: 27
Author(s): Yuan Jiang, Jie Chen, Jiwei Ling, Xiaonian Zhu, Pinping Jiang, Xiaohu Tang, Huaqiang Zhou, Rong Li
Software Mentions: 6
Published: over 4 years ago

10.3389/fcimb.2021.643968

Gut Microbiome Alterations in Patients With Thyroid Nodules
Cited by: 15
Author(s): Ang Li, Tiantian Li, Xinxin Gao, Hang Yan, Jingfeng Chen, Mingjie Huang, Lin Wang, Dengke Yin, Hongqiang Li, Runsheng Ma, Qiang Zeng, Shuzhe Ding
Software Mentions: 6
Published: over 4 years ago

10.3389/fcell.2021.681431

Comprehensive Transcriptomic Analysis Reveals Prognostic Value of an EMT-Related Gene Signature in Colorectal Cancer
Cited by: 5
Author(s): Shaobo Mo, Weixing Dai, Zheng Zhou, Ruiqi Gu, Yaqi Li, Wenqiang Xiang, Lingyu Han, Long Zhang, Renjie Wang, Guoxiang Cai, Sanjun Cai, Lu Gan, Qingguo Li
Software Mentions: 6
Published: about 4 years ago

10.1098/rsob.160183

Prediction and validation of protein–protein interactors from genome-wide DNA-binding data using a knowledge-based machine-learning approach
Cited by: 10
Author(s): Ashley J. Waardenberg, Homan Bernou, Mohamed Salim, Richard P. Harvey, Romaric Bouveret
Software Mentions: 6
Published: almost 9 years ago

10.3389/fcell.2021.641629

Dysregulation of miR-138-5p/RPS6KA1-AP2M1 Is Associated With Poor Prognosis in AML
Cited by: 10
Author(s): Donghu Yu, Chen Chen, Xiaoping Li, Jie Yao, Sheng Li, Xiaolan Ruan
Software Mentions: 6
Published: over 4 years ago

10.3389/fonc.2021.675545

Identification of a Ferroptosis-Related LncRNA Signature as a Novel Prognosis Model for Lung Adenocarcinoma
Cited by: 52
Author(s): Lu Lu, Leping Liu, Qiangqiang Zhao, Rong Gui, Qiancheng Zhao
Software Mentions: 6
Published: about 4 years ago

10.3389/fgene.2021.642608

Significance of Tumor Mutation Burden Combined With Immune Infiltrates in the Progression and Prognosis of Advanced Gastric Cancer
Cited by: 18
Author(s): Xiong Guo, Xiaolong Liang, Yujun Wang, Anqi Cheng, Han Zhang, Chuan Qin, Ziwei Wang
Software Mentions: 6
Published: about 4 years ago

10.1002/1878-0261.12351

GeneExpressScore Signature: a robust prognostic and predictive classifier in gastric cancer
Cited by: 18
Author(s): Xiaoqiang Zhu, Xianglong Tian, Tiantian Sun, Chuangqi Yu, Yingying Cao, Tingting Yan, Chaoqin Shen, Yanwei Lin, Jing–Yuan Fang, Jie Hong, Haoyan Chen
Software Mentions: 6
Published: almost 7 years ago

10.3389/fonc.2021.580886

Radiomics Nomogram for Identifying Sub-1 cm Benign and Malignant Thyroid Lesions
Cited by: 7
Author(s): Xinxin Wu, Jingjing Li, Yakui Mou, Yao Yao, Jingjing Cui, Ning Mao, Xuejiao Song
Software Mentions: 6
Published: about 4 years ago

10.3389/fonc.2021.592211

An Immune-Related Gene Pairs Signature Predicts Prognosis and Immune Heterogeneity in Glioblastoma
Cited by: 1
Author(s): Nijia Zhang, Ming Ge, Tao Jiang, Xiaoxia Peng, Hailang Sun, Qi Xiang, Zhewei Zou, Dapeng Li
Software Mentions: 6
Published: over 4 years ago

10.3390/ijms22031189

Comparison of Proteomic Technologies for Blood-Based Detection of Colorectal Cancer
Cited by: 7
Author(s): Megha Bhardwaj, Tobias Terzer, Petra Schrotz‐King, Hermann Brenner
Software Mentions: 6
Published: over 4 years ago

10.3389/fmicb.2020.610009

Evidence That Microorganisms at the Animal-Water Interface Drive Sea Star Wasting Disease
Cited by: 28
Author(s): Citlalli A Aquino, Ryan M Besemer, Christopher M. DeRito, Jan Kocian, Ian Porter, Peter T. Raimondi, Jordan E Rede, Lauren M. Schiebelhut, Jed P. Sparks, John P. Wares, Ian Hewson
Software Mentions: 6
Published: over 4 years ago

10.3389/fcell.2021.644220

Prognostic Signatures of Metabolic Genes and Metabolism-Related Long Non-coding RNAs Accurately Predict Overall Survival for Osteosarcoma Patients
Cited by: 8
Author(s): Chang Gong, Rong Tang, Yawei Shi, Liu Tai-cong, Kaisheng Zhou, Nan Wu, Haihong Zhang
Software Mentions: 6
Published: over 4 years ago

10.3389/fmicb.2019.02120

Incorporating Statistical Test and Machine Intelligence Into Strain Typing of Staphylococcus haemolyticus Based on Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry
Cited by: 18
Author(s): Chia-Ru Chung, Hsin-Yao Wang, Frank Lien, Yi-Ju Tseng, Chun‐Hsien Chen, Tzong-Yi Lee, Tsui Ping Liu, Jorng-Tzong Horng, Jang Jih Lu
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12874-015-0066-2

Comparison of subset selection methods in linear regression in the context of health-related quality of life and substance abuse in Russia
Cited by: 53
Author(s): Olga Morozova, Olga S. Levina, Anneli Uusküla, Robert Heimer
Software Mentions: 6
Published: almost 10 years ago

10.3389/fmolb.2021.615084

Development of a Machine Learning-Based Autophagy-Related lncRNA Signature to Improve Prognosis Prediction in Osteosarcoma Patients
Cited by: 12
Author(s): Guangzhi Zhang, Zhi-Xi Wu, Chunying Li, Enhui Ren, Wenhua Yuan, Yajun Deng, Qiqi Xie
Software Mentions: 6
Published: about 4 years ago

10.3389/fmolb.2021.636991

Identifying Dendritic Cell–Related Genes Through a Co-Expression Network to Construct a 12-Gene Risk-Scoring Model for Predicting Hepatocellular Carcinoma Prognosis
Cited by: 7
Author(s): Chao-Yuan Huang, Xiaotao Jiang, Yuancheng Huang, Lina Zhao, Peiwu Li, Fengbin Liu
Software Mentions: 6
Published: about 4 years ago

10.1002/1878-0261.12707

Classification of diffuse lower‐grade glioma based on immunological profiling
Cited by: 40
Author(s): Fan Wu, Zhiliang Wang, Kuan‐Yu Wang, Guanzhang Li, Rui‐Chao Chai, Yuqing Liu, Haiyan Jiang, You Zhai, Yuemei Feng, Zheng Zhao, Wei Zhang
Software Mentions: 6
Published: about 5 years ago

10.3389/fonc.2021.631803

Prognostic and Predictive Value of m6A “Eraser” Related Gene Signature in Gastric Cancer
Cited by: 14
Author(s): Xin Xu, Enbo Zhou, Jun Zheng, Chihao Zhang, Yinghua Zou, Jiayun Lin, Jiwei Yu
Software Mentions: 6
Published: over 4 years ago

10.3389/fonc.2021.732447

Comprehensive Molecular Analyses of a Six-Gene Signature for Predicting Late Recurrence of Hepatocellular Carcinoma
Cited by: 7
Author(s): Yuyuan Zhang, Xinwei Han, Xin Li, Long Liu, Libo Wang, Xinwei Han, Zhen Li
Software Mentions: 6
Published: almost 4 years ago

10.1002/hbm.24554

Detection of mild cognitive impairment in a community‐dwelling population using quantitative, multiparametric MRI‐based classification
Cited by: 6
Author(s): Mark J. R. J. Bouts, Jeroen van der Grond, Meike W. Vernooij, Marisa Koini, Tijn M. Schouten, Frank de Vos, Rogier A. Feis, Lotte G.M. Cremers, Anita Lechner, Reinhold Schmidt, Mark de Rooij, Wiro J. Niessen, M. Arfan Ikram, Serge A.R.B. Rombouts
Software Mentions: 6
Published: over 6 years ago

10.1016/j.gpb.2016.03.006

Comparison of Cox Model Methods in A Low-dimensional Setting with Few Events
Cited by: 15
Author(s): Francisco Ojeda, Christian Müller, Daniela Börnigen, David‐Alexandre Trégouët, Arne Schillert, Matthias Heinig, Tanja Zeller, Renate B. Schnabel
Software Mentions: 6
Published: almost 9 years ago

10.1186/1471-2288-14-116

Validation of prediction models based on lasso regression with multiply imputed data
Cited by: 91
Author(s): Jammbe Z. Musoro, Aeilko H. Zwinderman, Milo A. Puhan, Gerben ter Riet, Ronald B. Geskus
Software Mentions: 6
Published: almost 11 years ago

10.1515/med-2021-0284

Nomogram prediction model for renal anaemia in IgA nephropathy patients
Cited by: 3
Author(s): Fēi Li, Ri-bao Wei, Yang Wang, Ting-Yu Su, Ping Li, Mengjie Huang, Xiangmei Chen
Software Mentions: 6
Published: over 4 years ago

10.1111/jcmm.14651

Identification of prognosis‐related alternative splicing events in kidney renal clear cell carcinoma
Cited by: 13
Author(s): Yongdi Zuo, Liang Zhang, Weihao Tang, Wanxin Tang
Software Mentions: 6
Published: almost 6 years ago

10.3389/fgene.2021.639254

Identification and Validation of a Novel Immune-Related Four-lncRNA Signature for Lung Adenocarcinoma
Cited by: 14
Author(s): Jixin Wang, Xiangjun Yin, Yin‐Qiang Zhang, Xuming Ji
Software Mentions: 6
Published: over 4 years ago

10.1172/jci.insight.140380

Patient ancestry significantly contributes to molecular heterogeneity of systemic lupus erythematosus
Cited by: 41
Author(s): Michelle D. Catalina, Prathyusha Bachali, Anthony E. T. Yeo, Nicholas S. Geraci, Michelle Petri, Amrie C. Grammer, Peter E. Lipsky
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12872-021-02135-x

Combined evaluation of coronary artery disease and high-sensitivity cardiac troponin T for prediction of adverse events in patients with hypertrophic cardiomyopathy
Cited by: 3
Author(s): Hang Liao, Huay Cheem Tan, Ziqiong Wang, Xiaoping Chen, Yong He, Sen He
Software Mentions: 6
Published: about 4 years ago

10.1172/jci.insight.146242

Comorbid illnesses are associated with altered adaptive immune responses to SARS-CoV-2
Cited by: 36
Author(s): Krystle K. Q. Yu, Stephanie Fischinger, Malisa T. Smith, Caroline Atyeo, Deniz Cizmeci, Caitlin R Wolf, Erik D. Layton, Jennifer K. Logue, Melissa S. Aguilar, Kiel Shuey, Carolin Loos, Jingyou Yu, Nicholas Franko, Robert Y. Choi, Anna Wald, Dan H. Barouch, David M. Koelle, Douglas A. Lauffenburger, Helen Y. Chu, Galit Alter, Chetan Seshadri
Software Mentions: 6
Published: over 4 years ago

10.3389/fgene.2021.659650

Unraveling City-Specific Microbial Signatures and Identifying Sample Origins for the Data From CAMDA 2020 Metagenomic Geolocation Challenge
Cited by: 1
Author(s): Runzhi Zhang, Dorothy Ellis, Alejandro R. Walker, Susmita Datta
Software Mentions: 6
Published: almost 4 years ago

10.1111/jcmm.16368

Ferroptosis‐related gene signature as a prognostic marker for lower‐grade gliomas
Cited by: 24
Author(s): Yi Zheng, Qiang Ji, Lei Xie, Can Wang, Chunna Yu, Yali Wang, Jing Jiang, Feng Chen, Wenbin Li
Software Mentions: 6
Published: over 4 years ago

10.1186/s12880-021-00581-9

Radiomic model for differentiating parotid pleomorphic adenoma from parotid adenolymphoma based on MRI images
Cited by: 11
Author(s): Lele Song, Shun-jun Chen, Wang Chen, Zhan Shi, Xiaodong Wang, Lina Song, Chen Diansen
Software Mentions: 6
Published: over 4 years ago

10.3389/fonc.2020.01496

Development and Validation of a Clinical Prognostic Model Based on Immune-Related Genes Expressed in Clear Cell Renal Cell Carcinoma
Cited by: 11
Author(s): Shengxiang Ren, Wei Wang, Hanyu Shen, Chenlin Zhang, Haiyan Hao, Mengjing Sun, Yingjing Wang, Xiaojing Zhang, Bing Lu, Chen Chen, Ziheng Wang
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12967-021-03012-z

Cancer-associated fibroblast infiltration in gastric cancer: the discrepancy in subtypes pathways and immunosuppression
Cited by: 18
Author(s): Xu Liu, Li Yao, Jingkun Qu, Lin Liu, Ning Lü, Jiansheng Wang, Zhang Jia
Software Mentions: 6
Published: almost 4 years ago

10.1186/s12876-021-01734-4

Identification of the angiogenesis related genes for predicting prognosis of patients with gastric cancer
Cited by: 9
Author(s): Shu Zheng, Zizhen Zhang, Ning Ding, Jiawei Sun, Yaowang Lin, Jingyu Chen, Jing Zhong, Liming Shao, Zhenghua Lin, Min Xue
Software Mentions: 6
Published: over 4 years ago

10.18632/aging.203260

Screening and identification of angiogenesis-related genes as potential novel prognostic biomarkers of hepatocellular carcinoma through bioinformatics analysis
Cited by: 6
Author(s): Zili Zhen, Zan Shen, Yanmei Hu, Peilong Sun
Software Mentions: 6
Published: about 4 years ago

10.1172/JCI121087

An airway epithelial IL-17A response signature identifies a steroid-unresponsive COPD patient subgroup
Cited by: 69
Author(s): Stephanie A. Christenson, Maarten van den Berge, Alen Faiz, Kai Inkamp, Nirav R. Bhakta, Luke R. Bonser, Lorna Zlock, Igor Barjaktarević, R. Graham Barr, Eugene R. Bleecker, Richard C. Boucher, Russell P. Bowler, Alejandro P. Comellas, Jeffrey L. Curtis, Mei Lan K. Han, Nadia N. Hansel, Pieter S. Hiemstra, Robert J. Kaner, Jerry A. Krishnanm, Fernando J. Martínez, Wanda K. O’Neal, Robert Paine, Wim Timens, James M. Wells, Avrum Spira, David J. Erle, Prescott G. Woodruff
Software Mentions: 6
Published: over 6 years ago

10.1186/s13104-017-2540-x

The effect of mislabeled phenotypic status on the identification of mutation-carriers from SNP genotypes in dairy cattle
Cited by: 6
Author(s): Stefano Biffani, Hubert Pausch, Hermann Schwarzenbacher, Filippo Biscarini
Software Mentions: 6
Published: about 8 years ago

10.3389/fmolb.2016.00026

biosigner: A New Method for the Discovery of Significant Molecular Signatures from Omics Data
Cited by: 46
Author(s): Philippe Rinaudo, Samia Boudah, Christophe Junot, Etienne Thévenot
Software Mentions: 6
Published: about 9 years ago

10.18632/aging.103743

Identification of subtype-specific genes signature by WGCNA for prognostic prediction in diffuse type gastric cancer
Cited by: 6
Author(s): Qi Zhou, Liqun Zhou, Shihao Li, Yi‐Wu Yuan, Li Liu, Jinliang Wang, Deng-Zhong Wu, You Wu, Lin Xin
Software Mentions: 6
Published: almost 5 years ago

10.1371/journal.pone.0199758

Antipsychotic prescribing patterns on admission to and at discharge from a tertiary care program for treatment-resistant psychosis
Cited by: 7
Author(s): Lik Hang N. Lee, Ric M. Procyshyn, Ralph de Vere White, Todd S. Woodward, William G. Honer, Alasdair M. Barr
Software Mentions: 6
Published: almost 7 years ago

10.3390/v13020169

The Ecology of Nipah Virus in Bangladesh: A Nexus of Land-Use Change and Opportunistic Feeding Behavior in Bats
Cited by: 39
Author(s): Clifton McKee, Ariful Islam, Stephen P. Luby, Henrik Salje, Peter J. Hudson, Raina K. Plowright, Emily S. Gurley
Software Mentions: 6
Published: over 4 years ago

10.3390/jcm9061663

Low Expression of miR-20a-5p Predicts Benefit to Bevacizumab in Metastatic Breast Cancer Patients Treated within the TANIA Phase III Trial
Cited by: 6
Author(s): Gabriel Rinnerthaler, Simon Peter Gampenrieder, Hubert Hackl, Markus J. Steiner, Claudia Monzo-Fuentes, Thomas Melchardt, Teresa Magnes, Florian Huemer, Theresa Westphal, Clemens Hufnagl, Cornelia Hauser‐Kronberger, Alexander Egle, Richard Greil
Software Mentions: 6
Published: about 5 years ago

10.1186/s13756-020-00825-3

Risk prediction models to guide antibiotic prescribing: a study on adult patients with uncomplicated upper respiratory tract infections in an emergency department
Cited by: 4
Author(s): Joshua Wong, Aung-Hein Aung, Weixiang Lian, David C. Lye, Chee-Kheong Ooi, Angela Chow
Software Mentions: 6
Published: over 4 years ago

10.1371/journal.ppat.1009916

Quantifying transmission dynamics of acute hepatitis C virus infections in a heterogeneous population using sequence data
Cited by: 6
Author(s): Gonché Danesh, Victor Virlogeux, Christophe Ramière, Caroline Charre, Laurent Cotte, Samuel Alizon
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pone.0222733

BWGS: A R package for genomic selection and its application to a wheat breeding programme
Cited by: 30
Author(s): Gilles Charmet, Louis-Gautier Tran, Jérôme Auzanneau, Renaud Rincent, Sophie Bouchet
Software Mentions: 6
Published: over 5 years ago

10.3389/fgene.2021.667358

Improving Genomic Prediction Using High-Dimensional Secondary Phenotypes
Cited by: 3
Author(s): Bader Arouisse, Tom P.J.M. Theeuwen, F.A. van Eeuwijk, Willem Kruijer
Software Mentions: 6
Published: about 4 years ago

10.3389/fmolb.2021.607090

Identification of an IRGP Signature to Predict Prognosis and Immunotherapeutic Efficiency in Bladder Cancer
Cited by: 12
Author(s): Lianghao Zhang, Long‐Qing Li, Yonghao Zhan, Zhaowei Zhu, Xuepei Zhang
Software Mentions: 6
Published: over 4 years ago

10.3389/fonc.2020.572708

Hematopoietic Gene Expression Regulation Through m6A Methylation Predicts Prognosis in Stage III Colorectal Cancer
Cited by: 1
Author(s): Zheng Zhou, Shaobo Mo, Ruiqi Gu, Weixing Dai, Xinhui Zou, Lingyu Han, Long Zhang, Renjie Wang, Guoxiang Cai
Software Mentions: 6
Published: almost 5 years ago

10.1186/s12284-018-0223-4

Genomic selection of agronomic traits in hybrid rice using an NCII population
Cited by: 59
Author(s): Yongsheng Xu, Xin Wang, Xiaowen Ding, Xianwei Zheng, Zefeng Yang, Chenwu Xu, Zhongli Hu
Software Mentions: 6
Published: about 7 years ago

10.1155/2021/6693219

A Novel 8-Gene Prognostic Signature for Survival Prediction of Uveal Melanoma
Cited by: 3
Author(s): Zhongjun Tang, Kebo Cai
Software Mentions: 6
Published: almost 4 years ago

10.1186/s12859-018-2344-6

Priority-Lasso: a simple hierarchical approach to the prediction of clinical outcome using multi-omics data
Cited by: 32
Author(s): Simon Klau, Vindi Jurinović, Roman Hornung, Tobias Herold, Anne‐Laure Boulesteix
Software Mentions: 6
Published: almost 7 years ago

10.1186/s12885-019-5993-6

Dynamic prediction of long-term survival in patients with primary gastric diffuse large B-cell lymphoma: a SEER population-based study
Cited by: 10
Author(s): Ju‐Li Lin, Lin Ji, Ping Li, Jian‐Wei Xie, Jia-Bin Wang, Jun Lü, Qi‐Yue Chen, Long‐Long Cao, Chang‐Ming Huang, Chao‐Hui Zheng
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12911-021-01463-4

Assessing elderly’s functional balance and mobility via analyzing data from waist-mounted tri-axial wearable accelerometers in timed up and go tests
Cited by: 8
Author(s): Lisha Yu, Yang Zhao, Hailiang Wang, Tien‐Lung Sun, Terrence E. Murphy, Kwok‐Leung Tsui
Software Mentions: 6
Published: over 4 years ago

10.3389/fmolb.2020.620765

Development and External Validation of a Novel Immune Checkpoint–Related Gene Signature for Prediction of Overall Survival in Hepatocellular Carcinoma
Cited by: 11
Author(s): Enfa Zhao, Shimin Chen, Yujie Dang
Software Mentions: 6
Published: over 4 years ago

10.1155/2020/1686480

miRNA-Based Feature Classifier Is Associated with Tumor Mutational Burden in Head and Neck Squamous Cell Carcinoma
Cited by: 7
Author(s): Yu Xia, Qi Wang, Xiaolin Huang, Xinhai Yin, Jukun Song, Ke Zhao, Xiaofeng Duan
Software Mentions: 6
Published: over 4 years ago

10.15252/msb.20167435

Transcriptional regulatory networks underlying gene expression changes in Huntington's disease
Cited by: 51
Author(s): Seth A. Ament, Jocelynn Pearl, Jeffrey P. Cantle, Robert M. Bragg, Peter J. Skene, Sydney R. Coffey, Dani E Bergey, Vanessa C. Wheeler, Marcy E. MacDonald, Nitin S. Baliga, Jim Rosinski, Leroy Hood, Jeffrey B. Carroll, Nathan D. Price
Software Mentions: 6
Published: over 7 years ago

10.1002/sim.6782

Review and evaluation of penalised regression methods for risk prediction in low‐dimensional data with few events
Cited by: 208
Author(s): Menelaos Pavlou, Gareth Ambler, Shaun Seaman, Maria De Iorio, Rumana Omar
Software Mentions: 6
Published: over 9 years ago

10.3389/fonc.2020.01121

Radiomics Based on CECT in Differentiating Kimura Disease From Lymph Node Metastases in Head and Neck: A Non-Invasive and Reliable Method
Cited by: 7
Author(s): Ying Zhang, Sheng-Bo Yu, Li Zhang, Lillian Kang
Software Mentions: 6
Published: about 5 years ago

10.3389/fonc.2020.596087

Identification of a Novel Glycolysis-Related Gene Signature for Predicting Breast Cancer Survival
Cited by: 18
Author(s): Dai Zhang, Yi Zheng, Shuanying Yang, Yiche Li, Meng Wang, Jia Yao, Yao Deng, Na Li, Bajin Wei, Ying Wu, Yuyao Zhu, Hongtao Li, Zhijun Dai
Software Mentions: 6
Published: over 4 years ago

10.1155/2015/178572

A Systematic Evaluation of Feature Selection and Classification Algorithms Using Simulated and Real miRNA Sequencing Data
Cited by: 7
Author(s): Sheng Yang, Li Guo, Fang Shao, Yang Zhao, Feng Chen
Software Mentions: 6
Published: over 10 years ago

10.3389/fnagi.2021.602781

Exploring the Key Genes and Identification of Potential Diagnosis Biomarkers in Alzheimer’s Disease Using Bioinformatics Analysis
Cited by: 20
Author(s): Wuhan Yu, Weihua Yu, Yan Yang, Yang Lü
Software Mentions: 6
Published: about 4 years ago

10.1002/clc.23532

Predicting <scp>90 day</scp> acute heart failure readmission and death using machine <scp>learning‐supported</scp> decision analysis
Cited by: 20
Author(s): FarnazBabaie Sarijaloo, Jaeyoung Park, Xiang Zhong, Anita Wokhlu
Software Mentions: 6
Published: over 4 years ago

10.3389/fonc.2021.642563

A Novel Five-Gene Signature for Prognosis Prediction in Hepatocellular Carcinoma
Cited by: 14
Author(s): Lisa Su, Genhao Zhang, Xiangdong Kong
Software Mentions: 6
Published: about 4 years ago

10.1186/s40246-021-00323-6

An ensemble of the iCluster method to analyze longitudinal lncRNA expression data for psoriasis patients
Cited by: 2
Author(s): Suyan Tian, Chi Wang
Software Mentions: 6
Published: over 4 years ago

10.1038/s42003-021-01673-6

Glacial melt disturbance shifts community metabolism of an Antarctic seafloor ecosystem from net autotrophy to heterotrophy
Cited by: 11
Author(s): Ulrike Braeckman, Francesca Pasotti, Ralf Hoffmann, Susana Vázquez, Angela Wulff, Irene R Schloss, Ulrike Falk, Dolores Deregibus, Nene Lefaible, Anders Torstensson, Adil Y. Al-Handal, Frank Wenzhöfer, Ann Vanreusel
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-021-97891-3

Soft threshold partial least squares predicts the survival fraction of malignant glioma cells against different concentrations of methotrexate’s derivatives
Cited by: 0
Author(s): Tahir Mehmood, Mudassir Iqbal
Software Mentions: 6
Published: almost 4 years ago

10.1186/s13059-020-01953-0

ncHMR detector: a computational framework to systematically reveal non-classical functions of histone modification regulators
Cited by: 7
Author(s): Shengen Hu, Dawei Huo, Zhaowei Yu, Yujie Chen, Jing Liu, Lin Liu, Xudong Wu, Yong Zhang
Software Mentions: 6
Published: over 5 years ago

10.3390/s19204496

Simultaneous Assessment of Urinary and Fecal Volatile Organic Compound Analysis in De Novo Pediatric IBD
Cited by: 9
Author(s): Sofia el Manouni el Hassani, Sofie Bosch, Jesse P. M. Lemmen, Marina Brizzio Brentar, Ibrahim Ayada, Alfian Wicaksono, James A. Covington, Marc A. Benninga, Nanne K. H. de Boer, Tim G. J. de Meij
Software Mentions: 6
Published: almost 6 years ago

10.1038/s41598-021-88440-z

Machine-learning based prediction of Cushing’s syndrome in dogs attending UK primary-care veterinary practice
Cited by: 7
Author(s): Imogen Schofield, David Brodbelt, Noel Kennedy, Stijn Niessen, David Church, Rebecca Geddes, Dan G. O’Neill
Software Mentions: 6
Published: over 4 years ago

10.1038/s42003-021-01868-x

Distribution of microRNA profiles in pre-clinical and clinical forms of murine and human prion disease
Cited by: 8
Author(s): Lesley Cheng, Camelia Quek, Xia Li, Shayne A. Bellingham, Laura J Ellett, Mitch Shambrook, Saima Zafar, Inga Zerr, Victoria Lawson, Andrew F. Hill
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-019-54447-w

A genomic predictor of lifespan in vertebrates
Cited by: 43
Author(s): Benjamin Mayne, Oliver Berry, Campbell R. Davies, Jessica Farley, Simon Jarman
Software Mentions: 6
Published: over 5 years ago

10.3390/cells10061459

A Distinct Faecal Microbiota and Metabolite Profile Linked to Bowel Habits in Patients with Irritable Bowel Syndrome
Cited by: 19
Author(s): Bani Ahluwalia, Cristina Iribarren, Maria K. Magnusson, Johanna Sundin, Egbert Clevers, Otto Savolainen, Alastair B. Ross, Hans Törnblom, Magnus Simrén, Lena Öhman
Software Mentions: 6
Published: about 4 years ago

10.1038/s41598-018-21161-y

Combinatory use of distinct single-cell RNA-seq analytical platforms reveals the heterogeneous transcriptome response
Cited by: 16
Author(s): Yukie Kashima, Ayako Suzuki, Ying Liu, Masahito Hosokawa, Hiroko Matsunaga, Masamitsu Shirai, Kohji Arikawa, Sumio Sugano, Takashi Kohno, Haruko Takeyama, Katsuya Tsuchihara, Yutaka Suzuki
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-021-87982-6

Association among extracellular superoxide dismutase genotype, plasma concentration, and comorbidity in the very old and centenarians
Cited by: 7
Author(s): Takashi Sasaki, Yukiko Abe, M. Takayama, Tetsuo Adachi, Hideyuki Okano, Nobuyoshi Hirose, Yasumichi Arai
Software Mentions: 6
Published: over 4 years ago

10.3389/fonc.2021.725181

Identification of N6-Methylandenosine-Related lncRNAs for Subtype Identification and Risk Stratification in Gastric Adenocarcinoma
Cited by: 9
Author(s): Yuancheng Huang, Zehong Yang, Chao-Yuan Huang, Xiaotao Jiang, Yanhua Yan, Kunhai Zhuang, Yi Wen, Fengbin Liu, Peiwu Li
Software Mentions: 6
Published: almost 4 years ago

10.1038/s41598-018-21851-7

Elastic net regularized regression for time-series analysis of plasma metabolome stability under sub-optimal freezing condition
Cited by: 15
Author(s): Gerard Bryan Gonzales, Sarah De Saeger
Software Mentions: 6
Published: over 7 years ago

10.3389/fonc.2019.01485

The Potential of Radiomics Nomogram in Non-invasively Prediction of Epidermal Growth Factor Receptor Mutation Status and Subtypes in Lung Adenocarcinoma
Cited by: 31
Author(s): Wei Zhao, Ying Wu, Yanan Xu, Yingli Sun, Pan Gao, Min Tan, Wenrui Ma, Cheng Li, Liang Jin, Yanqing Hua, Jun Liu, Ming Li
Software Mentions: 6
Published: over 5 years ago

10.1155/2020/8974793

Comprehensive Analysis of Tumor-Infiltrating Immune Cells and Relevant Therapeutic Strategy in Esophageal Cancer
Cited by: 14
Author(s): Guangrong Lu, Liping Chen, Shengjie Wu, Yuao Feng, Tiesu Lin
Software Mentions: 6
Published: about 5 years ago

10.1038/s41598-021-83338-2

Inclusion of genetic variants in an ensemble of gradient boosting decision trees does not improve the prediction of citalopram treatment response
Cited by: 6
Author(s): Jason Shumake, Travis T. Mallard, John E. McGeary, Christopher G. Beevers
Software Mentions: 6
Published: over 4 years ago

10.12688/f1000research.17149.2

Hub genes in a pan-cancer co-expression network show potential for predicting drug responses
Cited by: 0
Author(s): Francisco Azuaje, Tony Kaoma, Céline Jeanty, Petr V. Nazarov, Arnaud Muller, Sang Yoon Kim, Gunnar Dittmar, Anna Golebiewska, Simone P. Niclou
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-018-23494-0

Methylation-to-Expression Feature Models of Breast Cancer Accurately Predict Overall Survival, Distant-Recurrence Free Survival, and Pathologic Complete Response in Multiple Cohorts
Cited by: 6
Author(s): Jeffrey Thompson, Brock C. Christensen, Carmen J. Marsit
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-018-37802-1

The transdiagnostic structure of mental effort avoidance
Cited by: 27
Author(s): Edward H. Patzelt, Wouter Kool, Alexander J. Millner, Samuel J. Gershman
Software Mentions: 6
Published: over 6 years ago

10.1016/j.tube.2019.101859

Distinct serum biosignatures are associated with different tuberculosis treatment outcomes
Cited by: 22
Author(s): Katharina Ronacher, Novel N. Chegou, Léanie Kleynhans, Joel Fleury Djoba Siawaya, Nelita du Plessis, André G. Loxton, Elizna Maasdorp, Gerard Tromp, Martin Kidd, Kim Stanley, Magdalena Kriel, Ângela Menezes, Andrea Gutschmidt, Gian D. van der Spuy, Robin M. Warren, Reynaldo Dietze, Alphonse Okwera, Bonnie Thiel, John T. Belisle, Jacqueline M. Cliff, W. Henry Boom, John L. Johnson, Paul D. van Helden, Hazel M. Dockrell, Gerhard Walzl
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12711-016-0219-8

Genome-wide prediction using Bayesian additive regression trees
Cited by: 35
Author(s): Patrik Waldmann
Software Mentions: 6
Published: about 9 years ago

10.3390/diagnostics11050887

A Comprehensive Machine Learning Framework for the Exact Prediction of the Age of Onset in Familial and Sporadic Alzheimer’s Disease
Cited by: 3
Author(s): Jorge I. Vélez, Luiggi A. Samper, Mauricio Arcos-Holzinger, Lady G. Espinosa, Mario A. Isaza-Ruget, Francisco Lopera, Mauricio Arcos‐Burgos
Software Mentions: 6
Published: about 4 years ago

10.3389/fonc.2021.636479

An Immune Cell-Based Signature Associating With EMT Phenotype Predicts Postoperative Overall Survival of ESCC
Cited by: 4
Author(s): Hongliang Yu, Dayong Gu, Chao Yang, Jianhua Xu, Feng Yan, Xu He
Software Mentions: 6
Published: over 4 years ago

10.3390/nu13020549

Circulating Metabolites Associated with Postprandial Satiety in Overweight/Obese Participants: The SATIN Study
Cited by: 5
Author(s): Lucia Camacho-Barcía, Jesús García‐Gavilán, Christopher Papandreou, Thorsten Hansen, Jo Harrold, Graham Finlayson, John Blundell, Anders Sjödin, Jason C.G. Halford, Mònica Bulló
Software Mentions: 6
Published: over 4 years ago

10.3390/cancers13133330

Differential Regulation of Lacto-/Neolacto- Glycosphingolipid Biosynthesis Pathway Reveals Transcription Factors as Potential Candidates in Triple-Negative Breast Cancer
Cited by: 1
Author(s): Rui-chao Zeng, Ahmed Mohamed, Kum Kum Khanna, Michelle M. Hill
Software Mentions: 6
Published: about 4 years ago

10.1038/s41598-020-68343-1

Performance prediction of crosses in plant breeding through genotype by environment interactions
Cited by: 13
Author(s): Javad Ansarifar, Faezeh Akhavizadegan, Lizhi Wang
Software Mentions: 6
Published: about 5 years ago

10.3389/fonc.2020.580513

A Novel RNA Binding Protein-Related Prognostic Signature for Hepatocellular Carcinoma
Cited by: 25
Author(s): Yongbiao Huang, Sheng Chen, Qin Wan, Yali Wang, Long Li, Qianxia Li, Xianglin Yuan
Software Mentions: 6
Published: almost 5 years ago

10.1093/g3journal/jkab248

Harnessing multivariate, penalized regression methods for genomic prediction and QTL detection of drought-related traits in grapevine
Cited by: 5
Author(s): Charlotte Brault, Agnès Doligez, Le Cunff, Aude Coupel‐Ledru, Thierry Simonneau, Julien Chiquet, Patrice This, Timothée Flutre
Software Mentions: 6
Published: about 4 years ago

10.1038/s41598-021-81728-0

The impact of tinnitus distress on cognition
Cited by: 21
Author(s): Patrick Neff, Jorge Simões, S Psatha, Nyamaa Amarjargal, Benjamin Boecking, Leonie Rausch, Juliane Dettling-Papargyris, Christine Funk, Petra Brüeggemann, Birgit Mazurek
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-021-82474-z

Assessing biophysical and socio-economic impacts of climate change on regional avian biodiversity
Cited by: 8
Author(s): Simon Kapitza, Pham Van Ha, Tom Kompas, Nick Golding, Natasha C. R. Cadenhead, Payal Bal, Brendan A. Wintle
Software Mentions: 6
Published: over 4 years ago

10.1038/s41598-018-25679-z

A machine learning model with human cognitive biases capable of learning from small and biased datasets
Cited by: 38
Author(s): Hidetaka Taniguchi, Hiroshi Satō, Tomohiro Shirakawa
Software Mentions: 5
Published: about 7 years ago

10.1038/s41598-020-77846-w

Differential proteomic analysis by SWATH-MS unravels the most dominant mechanisms underlying yeast adaptation to non-optimal temperatures under anaerobic conditions
Cited by: 20
Author(s): Tânia Pinheiro, Ka Ying Florence Lip, Estéfani García‐Ríos, Amparo Querol, J. A. Teixeira, Walter van Gulik, José Manuel Guillamón, Lucı́lia Domingues
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-020-80453-4

Prognostic signature of lung adenocarcinoma based on stem cell-related genes
Cited by: 7
Author(s): Zhanghao Huang, Muqi Shi, Hao Zhou, Jinjie Wang, Haijian Zhang, Jia Hai Shi
Software Mentions: 5
Published: over 4 years ago

10.1038/s41398-019-0638-8

Implementing machine learning in bipolar diagnosis in China
Cited by: 10
Author(s): Yantao Ma, Jun Ji, Yun Huang, Huimin Gao, Zhiying Li, Wei Dong, Shuzhe Zhou, Yue Zhu, Weimin Dang, Tianhang Zhou, Haiqing Yu, Bin Yu, Yuefeng Long, Long Liu, Gary S. Sachs, Xinguang Yu
Software Mentions: 5
Published: over 5 years ago

10.1007/s00330-019-06513-0

Optimal timing for prediction of pathologic complete response to neoadjuvant chemoradiotherapy with diffusion-weighted MRI in patients with esophageal cancer
Cited by: 24
Author(s): Alicia S Borggreve, S.E. Heethuis, M. Boekhoff, Lucas Goense, Peter S.N. van Rossum, Lodewijk A.A. Brosens, Astrid L.H.M.W. van Lier, Richard van Hillegersberg, J J W Lagendijk, Stella Mook, Jelle P. Ruurda, Gert J. Meijer
Software Mentions: 5
Published: over 5 years ago

10.3390/cancers11010053

Prognostic Gene Discovery in Glioblastoma Patients using Deep Learning
Cited by: 34
Author(s): Kelvin Wong, Robert Rostomily, Stephen T.C. Wong
Software Mentions: 5
Published: over 6 years ago

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