Projects: pypi: cwltool
https://packages.ecosyste.ms/registries/pypi.org/packages/cwltool
Common workflow language reference implementation
422 versions
Latest release: almost 2 years ago
17 dependent packages
70,376 downloads last month
Enhanced Analysis
Educational Contributors:
[email protected]
[email protected]
[email protected]
[email protected]
[email protected]
[email protected]
[email protected]
[email protected]
[email protected]
[email protected]
[email protected]
[email protected]
[email protected]
[email protected]
[email protected]
[email protected]
Repository Activity:
Repository Owner:
Common Workflow Language (organization)
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+320
Educational commit emails
16 contributors with educational email addresses -
+10
Science terms in README
5 scientific terms found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-10
No science terms in description
No scientific terms found in description
Very Likely Science (100)
Papers Mentioning cwltool 8
10.1371/journal.pcbi.1007664
Tximeta: Reference sequence checksums for provenance identification in RNA-seqCited by: 122
Author(s): Michael I. Love, Charlotte Soneson, Peter Hickey, Lisa K. Johnson, Nicholas Pierce, Lori Shepherd, Martin Morgan, Rob Patro
Software Mentions: 19
Published: over 5 years ago
10.1093/gigascience/giz095
Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProvCited by: 45
Author(s): Farah Zaib Khan, Stian Soiland‐Reyes, Richard O. Sinnott, Andrew Lonie, Carole Goble, Michael R. Crusoe
Software Mentions: 8
Published: over 5 years ago
10.1371/journal.pcbi.1008622
Using prototyping to choose a bioinformatics workflow management systemCited by: 20
Author(s): Michael Jackson, Kostas Kavoussanakis, Eric Wallace
Software Mentions: 5
Published: over 4 years ago
10.1186/s12859-018-2446-1
Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomicsCited by: 26
Author(s): Shakuntala Baichoo, Yassine Souilmi, Sumir Panji, Gerrit Botha, Ayton Meintjes, Scott Hazelhurst, Hocine Bendou, Eugene de Beste, Phelelani T. Mpangase, Oussema Souiai, Mustafa Alghali, Long Yi, Brian D. O’Connor, Michael R. Crusoe, Don Armstrong, Shaun Aron, Fourie Joubert, Azza E. Ahmed, Mamana Mbiyavanga, Peter van Heusden, Lerato E Magosi, Jennie Zermeno, Liudmila Sergeevna Mainzer, Faisal M. Fadlelmola, C V Jongeneel, Nicola Mulder
Software Mentions: 4
Published: over 6 years ago
10.1093/gigascience/giz052
Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selectionCited by: 8
Author(s): Toshio Ohta, Tomoya Tanjo, Osamu Ogasawara
Software Mentions: 4
Published: over 6 years ago
10.1038/s41597-019-0174-7
Creating reproducible pharmacogenomic analysis pipelinesCited by: 5
Author(s): Anthony Mammoliti, Alexander Smirnov, Zhaleh Safikhani, Wail Ba-Alawi, Benjamin Haibe‐Kains
Software Mentions: 3
Published: almost 6 years ago
10.1038/s41598-019-55636-3
Deep whole-genome sequencing of 3 cancer cell lines on 2 sequencing platformsCited by: 31
Author(s): Kanika Arora, Minita Shah, Molly Johnson, Rashesh Sanghvi, Jennifer Shelton, Kshithija Nagulapalli, Dayna M. Oschwald, Michael C. Zody, Søren Germer, Vaidehi Jobanputra, Jade Carter, Nicolas Robine
Software Mentions: 2
Published: over 5 years ago
10.1093/gigascience/giz084
CWL-Airflow: a lightweight pipeline manager supporting Common Workflow LanguageCited by: 40
Author(s): Michael Kotliar, Andrey V. Kartashov, Artem Barski
Software Mentions: 2
Published: about 6 years ago