Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/gigascience/giz095

https://doi.org/10.1093/gigascience/giz095

Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv

Cited by: 45
Author(s): Farah Zaib Khan, Stian Soiland‐Reyes, Richard O. Sinnott, Andrew Lonie, Carole Goble, Michael R. Crusoe
Published: about 5 years ago

Software Mentions 8

cran: SAMtool
Stock Assessment Methods Toolkit
Papers that mentioned: 30
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: bcbio
UNKNOWN
Papers that mentioned: 20
pypi: cwlprov
cwlprov API for Python
Papers that mentioned: 1
pypi: cwltool
Common workflow language reference implementation
Papers that mentioned: 8
pypi: prov
A library for W3C Provenance Data Model supporting PROV-JSON, PROV-XML and PROV-O (RDF)
Papers that mentioned: 1
pypi: RO
Collection of utilities including general algorithms, astronomical transformations and Tkinter widgets
Papers that mentioned: 36
pypi: toil-cwl-runner
Pipeline management software for clusters using CWL.
Papers that mentioned: 1