Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1008622

https://doi.org/10.1371/journal.pcbi.1008622

Using prototyping to choose a bioinformatics workflow management system

Cited by: 20
Author(s): Michael Jackson, Kostas Kavoussanakis, Eric Wallace
Published: almost 4 years ago

Software Mentions 5

pypi: bash
Bash for Python
Papers that mentioned: 65
pypi: conda
OS-agnostic, system-level binary package manager.
Papers that mentioned: 92
pypi: cwltool
Common workflow language reference implementation
Papers that mentioned: 8
pypi: nf-core
Helper tools for use with nf-core Nextflow pipelines.
Papers that mentioned: 18
pypi: shell
A better way to run shell commands in Python.
Papers that mentioned: 207