Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: cellfinder
https://packages.ecosyste.ms/registries/pypi.org/packages/cellfinder
Automated 3D cell detection and registration of whole-brain images
89 versions
Latest release: over 1 year ago
2 dependent packages
281 downloads last month
Papers Mentioning cellfinder 4
10.7554/eLife.65751
Visualizing anatomically registered data with brainrenderCited by: 64
Author(s): Federico Claudi, Adam L. Tyson, Luigi Petrucco, Troy W. Margrie, Rubén Portugues, Tiago Branco
Software Mentions: 12
Published: over 3 years ago
10.1186/s13059-019-1639-x
CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA sequencingCited by: 23
Author(s): K. Sato, Koki Tsuyuzaki, Kentaro Shimizu, Itoshi Nikaido
Software Mentions: 7
Published: almost 6 years ago
10.1371/journal.pcbi.1009074
A deep learning algorithm for 3D cell detection in whole mouse brain image datasetsCited by: 39
Author(s): Adam L. Tyson, Charly V. Rousseau, Christian J. Niedworok, Sepiedeh Keshavarzi, Chryssanthi Tsitoura, Lee Cossell, Molly Strom, Troy W. Margrie
Software Mentions: 5
Published: over 3 years ago
10.1038/s41598-021-82353-7
Analysis of segmentation ontology reveals the similarities and differences in connectivity onto L2/3 neurons in mouse V1Cited by: 9
Author(s): Alexander P.Y. Brown, Lee Cossell, Molly Strom, Adam L. Tyson, Mateo Vélez-Fort, Troy W. Margrie
Software Mentions: 1
Published: over 3 years ago