Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.65751

https://doi.org/10.7554/eLife.65751

Cited by: 64
Author(s): Federico Claudi, Adam L. Tyson, Luigi Petrucco, Troy W. Margrie, Rubén Portugues, Tiago Branco
Published: about 3 years ago

Software Mentions 12

pypi: bg-space
Anatomical space conventions made easy
Papers that mentioned: 1
pypi: brainglobe
Python-based tools for computational neuroanatomy.
Papers that mentioned: 1
pypi: brainreg
Automated 3D brain registration
Papers that mentioned: 2
pypi: brainrender
Visualisation and exploration of brain atlases and other anatomical data
Papers that mentioned: 2
pypi: cellfinder
Automated 3D cell detection and registration of whole-brain images
Papers that mentioned: 4
pypi: imio
Loading and saving of image data.
Papers that mentioned: 1
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
pypi: morphapi
A lightweight python package to download neuronal morphologies
Papers that mentioned: 1
pypi: napari
n-dimensional array viewer in Python
Papers that mentioned: 7
pypi: numpy
Fundamental package for array computing in Python
Papers that mentioned: 832
pypi: pandas
Powerful data structures for data analysis, time series, and statistics
Papers that mentioned: 640
pypi: vedo
A python module for scientific analysis and visualization of 3D objects and point clouds based on VTK.
Papers that mentioned: 2