Ecosyste.ms: Papers

10.1155/2021/5510780

A Five-Gene Prognostic Nomogram Predicting Disease-Free Survival of Differentiated Thyroid Cancer
Cited by: 5
Author(s): Pan Ruchong, Hai-ping Tang, Xiang Wang
Software Mentions: 9
Published: over 3 years ago

10.3390/jcm10194354

Application of an Exploratory Knowledge-Discovery Pipeline Based on Machine Learning to Multi-Scale OMICS Data to Characterise Myocardial Injury in a Cohort of Patients with Septic Shock: An Observational Study
Cited by: 3
Author(s): Bernardo Bollen Pinto, Vicent Ribas Ripoll, Paula Subías-Beltrán, Antoine Herpain, Cristina Barlassina, Eliandre de Oliveira, Roberta Pastorelli, Daniele Braga, Matteo Barcella, Laia Subirats, Julia Bauzá‐Martinez, Antonia Odena, Manuela Ferrario, Giuseppe Baselli, Federico Aletti, Karim Bendjelid
Software Mentions: 9
Published: about 3 years ago

10.1371/journal.pone.0088839

Data Simulation in Machine Olfaction with the R Package Chemosensors
Cited by: 7
Author(s): Andrey Ziyatdinov, Alexandre Perera-Lluna
Software Mentions: 9
Published: over 10 years ago

10.1001/jamanetworkopen.2019.9812

Association of Severe Hyperoxemia Events and Mortality Among Patients Admitted to a Pediatric Intensive Care Unit
Cited by: 21
Author(s): Sriram Ramgopal, Cameron Dezfulian, Robert W. Hickey, Alicia K. Au, Shekhar T. Venkataraman, Robert S. B. Clark, Christopher M. Horvat
Software Mentions: 9
Published: over 5 years ago

10.1186/s40575-021-00100-7

Dog breeds and body conformations with predisposition to osteosarcoma in the UK: a case-control study
Cited by: 13
Author(s): Grace Edmunds, Matthew J. Smalley, Sam Beck, Rachel J. Errington, Sara Gould, Helen Winter, David Brodbelt, Dan G. O’Neill
Software Mentions: 9
Published: over 3 years ago

10.3389/fmicb.2018.02571

PredT4SE-Stack: Prediction of Bacterial Type IV Secreted Effectors From Protein Sequences Using a Stacked Ensemble Method
Cited by: 97
Author(s): Yi Xiong, Qiankun Wang, Junchen Yang, Xiaolei Zhu, Dong‐Qing Wei
Software Mentions: 9
Published: about 6 years ago

10.1038/s41598-019-50480-x

Early Prediction of Soybean Traits through Color and Texture Features of Canopy RGB Imagery
Cited by: 21
Author(s): Wenan Yuan, Nuwan K. Wijewardane, Shawn Jenkins, Geng Bai, Yufeng Ge, George L. Graef
Software Mentions: 9
Published: about 5 years ago

10.18632/aging.101795

Predicting chromosome 1p/19q codeletion by RNA expression profile: a comparison of current prediction models
Cited by: 4
Author(s): Zhiliang Wang, Zheng Zhao, Zheng Wang, Chuanbao Zhang, Tao Jiang
Software Mentions: 9
Published: almost 6 years ago

10.1128/mSphere.00537-20

Gut Microbiota Predict <i>Enterococcus</i> Expansion but Not Vancomycin-Resistant <i>Enterococcus</i> Acquisition
Cited by: 10
Author(s): Rishi Chanderraj, Christopher Brown, Kevin J. Hinkle, Nicole R. Falkowski, Piyush Ranjan, Robert P. Dickson, Robert J. Woods
Software Mentions: 9
Published: almost 4 years ago

10.1186/s42523-021-00118-z

Microbial composition differs between production systems and is associated with growth performance and carcass quality in pigs
Cited by: 5
Author(s): Christian Maltecca, Robert R. Dunn, Yuqing He, Nathan P. McNulty, Constantino Schillebeeckx, Charles V. Schwab, Caleb M Shull, Justin Fix, Francesco Tiezzi
Software Mentions: 9
Published: about 3 years ago

10.1038/s41598-019-55563-3

RETRACTED ARTICLE: The diagnostic nomogram of platelet-based score models for hepatic alveolar echinococcosis and atypical liver cancer
Cited by: 4
Author(s): Qiancheng Du, Yanyan Wang, Shihao Guan, Chenliang Hu, Mengxuan Li, Ling Zhou, Mengzhao Zhang, Yichong Chen, Xuepeng Mei, Jian Sun, Ying Zhou
Software Mentions: 9
Published: almost 5 years ago

10.1186/s12940-017-0310-9

Construction of environmental risk score beyond standard linear models using machine learning methods: application to metal mixtures, oxidative stress and cardiovascular disease in NHANES
Cited by: 73
Author(s): Sung Kyun Park, Zhangchen Zhao, Bhramar Mukherjee
Software Mentions: 9
Published: about 7 years ago

10.18632/oncotarget.27271

Single cell correlation analysis of liquid and solid biopsies in metastatic colorectal cancer
Cited by: 10
Author(s): Anna Sandström Gerdtsson, Jana-Aletta Thiele, Stephanie N. Shishido, Serena Zheng, Randolph Schaffer, Kelly Bethel, Steven A. Curley, Heinz‐Josef Lenz, Diana L. Hanna, Jorgé Nieva, Anand Kolatkar, C.B. Congregado Ruiz, Mariam Rodrı́guez-Lee, Gerard J. Oakley, Jerry S.H. Lee, James Hicks, Peter Kühn
Software Mentions: 9
Published: almost 5 years ago

10.1371/journal.pone.0254356

Endpoint PCR coupled with capillary electrophoresis (celPCR) provides sensitive and quantitative measures of environmental DNA in singleplex and multiplex reactions
Cited by: 7
Author(s): Bettina Thalinger, Yannick Pütz, Michael Traugott
Software Mentions: 9
Published: over 3 years ago

10.7717/peerj.4555

Small tropical islands with dense human population: differences in water quality of near-shore waters are associated with distinct bacterial communities
Cited by: 10
Author(s): Hauke Kegler, Christiane Hassenrück, Pia Kegler, Tim C Jennerjahn, Muhammad Lukman, Jamaluddin Jompa, Astrid Gärdes
Software Mentions: 9
Published: over 6 years ago

10.3389/fpls.2019.01355

In-Field Detection and Quantification of Septoria Tritici Blotch in Diverse Wheat Germplasm Using Spectral–Temporal Features
Cited by: 22
Author(s): Jonas Anderegg, Andreas Hund, Petteri Karisto, Alexey Mikaberidze
Software Mentions: 9
Published: about 5 years ago

10.3390/ijerph18084052

The Impact of Temperature on the Risk of COVID-19: A Multinational Study
Cited by: 5
Author(s): Ya‐Chen Yang, Jason Lee
Software Mentions: 9
Published: over 3 years ago

10.1186/s12957-020-02025-0

Development of a novel prognostic score combining clinicopathologic variables, gene expression, and mutation profiles for lung adenocarcinoma
Cited by: 4
Author(s): Guofeng Li, Guangsuo Wang, Yanhua Guo, Shixuan Li, Youlong Zhang, Jialu Li, Bin Peng
Software Mentions: 9
Published: about 4 years ago

10.3389/fimmu.2018.02074

Epigenetic Enhancer Marks and Transcription Factor Binding Influence Vκ Gene Rearrangement in Pre-B Cells and Pro-B Cells
Cited by: 13
Author(s): Eden Kleiman, Salvatore Loguercio, Ann J. Feeney
Software Mentions: 9
Published: about 6 years ago

10.3389/fonc.2021.616976

A Nomogram for Preoperative Estimation of Microvascular Invasion Risk in Hepatocellular Carcinoma: Single-Center Analyses With Internal Validation
Cited by: 5
Author(s): Jiarui Yang, Shuguang Zhu, Juanjuan Yong, Xia Long, Xiangjun Qian, Jiawei Yang, Xueqiao Hu, Yuxuan Li, Chusi Wang, Wenguang Peng, Lei Zhang, Meihai Deng, Weidong Pan
Software Mentions: 9
Published: over 3 years ago

10.1371/journal.pone.0179337

The acoustic repertoire and behavioural context of the vocalisations of a nocturnal dasyurid, the eastern quoll (Dasyurus viverrinus)
Cited by: 5
Author(s): Annalie Dorph, Paul G. McDonald
Software Mentions: 9
Published: over 7 years ago

10.1371/journal.pone.0249102

The rodent object-in-context task: A systematic review and meta-analysis of important variables
Cited by: 5
Author(s): Milou S. C. Sep, Marijn Vellinga, R. Angela Sarabdjitsingh, Marian Joëls
Software Mentions: 9
Published: over 3 years ago

10.15252/msb.20188190

High‐throughput discovery of functional disordered regions: investigation of transactivation domains
Cited by: 121
Author(s): Charles N. J. Ravarani, Tamara Y. Erkina, Greet De Baets, Daniel C Dudman, Alexandre M. Erkine, M. Madan Babu
Software Mentions: 9
Published: over 6 years ago

10.1186/s12885-021-08745-0

A case-control study of a combination of single nucleotide polymorphisms and clinical parameters to predict clinically relevant toxicity associated with fluoropyrimidine and platinum-based chemotherapy in gastric cancer
Cited by: 5
Author(s): Miguel Córdova-Delgado, María Loreto Bravo, E Cumsille, Catherine M. Hill, Matías Muñoz-Medel, Mauricio P. Pinto, Ignacio N. Retamal, María A Lavanderos, Juan Francisco Miquel, María Rodríguez-Fernández, Yuwei Liao, Chi Kong Li, Alejandro Corvalán, Ricardo Armisén, Marcelo Garrido, Luis A. Quiñones, Gareth I. Owen
Software Mentions: 9
Published: about 3 years ago

10.1371/journal.ppat.1009278

Interleukin-15 response signature predicts RhCMV/SIV vaccine efficacy
Cited by: 11
Author(s): Fredrik Barrenäs, Scott G. Hansen, G. Lynn Law, Connor B. Driscoll, Richard Green, Eric E. Smith, Jean Chang, Inah Golez, Taryn Urion, Xinxia Peng, Leanne S. Whitmore, Daniel J. Newhouse, Colette M. Hughes, David W. Morrow, Kurt T. Randall, Andrea N. Selseth, Julia C. Ford, Roxanne M. Gilbride, Bryan E. Randall, Emily Ainslie, Kelli Oswald, Rebecca Shoemaker, Randy Fast, William J. Bosche, Michael K. Axthelm, Yoshinori Fukazawa, George N. Pavlakis, Barbara K. Felber, Slim Fourati, Rafick Pierre Sékaly, Jeffrey D. Lifson, Jan Komorowski, Ewelina Kosmider, Danica Shao, Wenjun Song, Paul T. Edlefsen, Louis J. Picker, Michael Gale
Software Mentions: 9
Published: over 3 years ago

10.1186/s13104-016-1945-2

Feature selection and validated predictive performance in the domain of Legionella pneumophila: a comparative study
Cited by: 9
Author(s): Tjeerd van der Ploeg, Ewout W. Steyerberg
Software Mentions: 9
Published: over 8 years ago

10.3390/jcm9030711

Deregulation of the Purine Pathway in Pre-Transplant Liver Biopsies Is Associated with Graft Function and Survival after Transplantation
Cited by: 4
Author(s): Jin Xu, Mohammad Hassan-Ally, Ana María Casas-Ferreira, Tommi Suvitaival, Yun Ma, Hector Vilca‐Melendez, Mohamed Rela, Nigel Heaton, Wayel Jassem, Cristina Legido‐Quigley
Software Mentions: 8
Published: over 4 years ago

10.3389/fgene.2021.627508

Integrated Analysis of the Prognosis-Associated RNA-Binding Protein Genes and Candidate Drugs in Renal Papillary Cell Carcinoma
Cited by: 22
Author(s): Shuiping Jiang, Xiaohan Ren, Shouyong Liu, Zhongwen Lü, Aiming Xu, Chao Qin, Zengjun Wang
Software Mentions: 8
Published: almost 4 years ago

10.3390/metabo11070463

Sex-Specific Relationship between the Cardiorespiratory Fitness and Plasma Metabolite Patterns in Healthy Humans—Results of the KarMeN Study
Cited by: 5
Author(s): Sina Kistner, Maik Döring, Ralf Krüger, M Rist, Christoph H. Weinert, Diana Bunzel, Benedikt Merz, Katrin Radloff, Rainer Neumann, Sascha Härtel, Achim Bub
Software Mentions: 8
Published: over 3 years ago

10.3390/ani11071940

Prevalence of BRD-Related Viral Pathogens in the Upper Respiratory Tract of Swiss Veal Calves
Cited by: 12
Author(s): Edgar Studer, Lutz Schönecker, Mireille Meylan, Dimitri Stucki, Ronald Dijkman, Melle Holwerda, Anna N. Glaus, Jens Becker
Software Mentions: 8
Published: over 3 years ago

10.3390/ma13112650

Teicoplanin-Modified HPLC Column as a Source of Experimental Parameters for Prediction of the Anticonvulsant Activity of 1,2,4-Triazole-3-Thiones by the Regression Models
Cited by: 1
Author(s): Jolanta Flieger, Anna Orzeł, Anna Kowalska-Kępczyńska, Magdalena Pizoń, Hanna Trębacz, Dariusz Majerek, Tomasz Plech, Wojciech Płaziński
Software Mentions: 8
Published: over 4 years ago

10.3390/cancers12113089

CT-Based Radiomics Analysis to Predict Malignancy in Patients with Intraductal Papillary Mucinous Neoplasm (IPMN) of the Pancreas
Cited by: 28
Author(s): David Tobaly, João Santinha, Riccardo Sartoris, Marco Dioguardi Burgio, Celso Matos, Jérôme Cros, Anne Couvelard, Vinciane Rebours, Alain Sauvanet, Maxime Ronot, Nikolaos Papanikolaou, Valérie Vilgrain
Software Mentions: 8
Published: about 4 years ago

10.1186/s13643-019-0942-7

Machine learning algorithms for systematic review: reducing workload in a preclinical review of animal studies and reducing human screening error
Cited by: 86
Author(s): Alexandra Bannach‐Brown, Piotr Przybyła, James Thomas, Andrew S.C. Rice, Sophia Ananiadou, Jing Liao, Malcolm Macleod
Software Mentions: 8
Published: almost 6 years ago

10.1186/gb-2013-14-12-r137

Integrative DNA methylation and gene expression analysis in high-grade soft tissue sarcomas
Cited by: 76
Author(s): Marcus Renner, Thomas Wolf, Hannah Meyer, Wolfgang Hartmann, Roland Penzel, Alexis Ulrich, Burkhard Lehner, Volker Hovestadt, Esteban Czwan, Gerlinde Egerer, Thomas Schmitt, Ingo Alldinger, Eva Kristin Renker, Volker Ehemann, Roland Eils, Eva Wardelmann, Reinhard Büttner, Peter Lichter, Benedikt Brors, Peter Schirmacher, Gunhild Mechtersheimer
Software Mentions: 8
Published: almost 12 years ago

10.1038/s41598-019-54496-1

Predicting the spatial abundance of Ixodes ricinus ticks in southern Scandinavia using environmental and climatic data
Cited by: 9
Author(s): Lene Jung Kjær, Arnulf Soleng, Kristin Skarsfjord Edgar, Heidi Elisabeth Heggen Lindstedt, Katrine M. Paulsen, Åshild Kristine Andreassen, Lars Korslund, Vivian Kjelland, Audun Slettan, Snorre Stuen, Petter Kjellander, Madeleine Christensson, Malin Teräväinen, Andreas Baum, Kirstine Klitgaard, René Bødker
Software Mentions: 8
Published: almost 5 years ago

10.3390/genes11040435

Identification of Potential Biomarkers for Anti-PD-1 Therapy in Melanoma by Weighted Correlation Network Analysis
Cited by: 14
Author(s): Xuanyi Wang, Zixuan Chai, Yinghong Li, Fei Long, Youjin Hao, Guizhi Pan, Mingwei Liu, Bo Li
Software Mentions: 8
Published: over 4 years ago

10.1038/s41598-019-50642-x

Transcriptome Sequencing of Peripheral Blood Mononuclear Cells from Elite Controller-Long Term Non Progressors
Cited by: 11
Author(s): Francisco Díez-Fuertes, Humberto Erick De La Torre Tarazona, Esther Calonge, María Pernas, María del Mar Alonso-Socas, Laura Capa, Javier García-Pérez, Anavaj Sakuntabhai, José Alcamı́
Software Mentions: 8
Published: about 5 years ago

10.1093/bib/bbz096

Evaluation of single-cell classifiers for single-cell RNA sequencing data sets
Cited by: 54
Author(s): Xinlei Zhao, Shuang Wu, Nan Fang, Xiao Sun, Jue Fan
Software Mentions: 8
Published: about 5 years ago

10.1186/s12940-016-0152-x

Assessing urinary flow rate, creatinine, osmolality and other hydration adjustment methods for urinary biomonitoring using NHANES arsenic, iodine, lead and cadmium data
Cited by: 69
Author(s): Daniel Middleton, Michael J. Watts, R. M. Lark, Chris Milne, David A. Polya
Software Mentions: 8
Published: over 8 years ago

10.1038/s41598-019-55325-1

Development of an in silico prediction system of human renal excretion and clearance from chemical structure information incorporating fraction unbound in plasma as a descriptor
Cited by: 25
Author(s): Reiko Watanabe, Rikiya Ohashi, Tsuyoshi Esaki, Hitoshi Kawashima, Yayoi Natsume-Kitatani, Chioko Nagao, Kenji Mizuguchi
Software Mentions: 8
Published: almost 5 years ago

10.1038/s41598-018-24758-5

Applications of Bayesian network models in predicting types of hematological malignancies
Cited by: 47
Author(s): Rupesh Agrahari, Amir Foroushani, T. Roderick Docking, Linda Chang, Gerben Duns, Monika Hudoba, Aly Karsan, Habil Zare
Software Mentions: 8
Published: over 6 years ago

10.1007/s00125-019-4848-7

Metformin-induced changes of the gut microbiota in healthy young men: results of a non-blinded, one-armed intervention study
Cited by: 117
Author(s): Thomas Bryrup, Cæcilie W. Thomsen, Timo Kern, Kristine H. Allin, Ivan Brandslund, Niklas Rye Jørgensen, Henrik Vestergaard, Torben Hansen, Oluf Pedersen, Trine Nielsen
Software Mentions: 8
Published: over 5 years ago

10.1093/braincomms/fcab141

Amyotrophic lateral sclerosis transcriptomics reveals immunological effects of low-dose interleukin-2
Cited by: 11
Author(s): Ilaria Giovannelli, Nadhim Bayatti, A.G. Brown, Dennis Wang, Marius Mickunas, William Camu, Jean-Luc Veyrune, Christine Payan, Cecilia Garlanda, Massimo Locati, Raul Juntas-Moralès, Nicolas Pageot, Andrea Malaspina, Ulf Andréasson, Carey Suehs, Safa Saker, Christophe Masseguin, John de Vos, Henrik Zetterberg, Ammar Al‐Chalabi, P. Nigel Leigh, Timothy Tree, G. Bensimon, Paul R. Heath, Pamela J. Shaw, Janine Kirby
Software Mentions: 8
Published: almost 4 years ago

10.1038/s41598-019-38483-0

Metabotyping as a Stopover in Genome-to-Phenome Mapping
Cited by: 31
Author(s): Pubudu Handakumbura, Bryan Stanfill, Albert Rivas‐Ubach, Dan Fortin, John P. Vogel, Christer Jansson
Software Mentions: 8
Published: almost 6 years ago

10.1371/journal.pone.0246834

The Transitivity Index: Using Transitivity as a continuous measure to account for clitic case alternation in Spanish causative constructions
Cited by: 2
Author(s): Gustavo Guajardo
Software Mentions: 8
Published: over 3 years ago

10.3389/fonc.2020.00832

Diagnostic Value of Combinatorial Markers in Colorectal Carcinoma
Cited by: 7
Author(s): Veronika Voronova, Petr Glybochko, Andrey Svistunov, В В Фомин, Philipp Kopylov, Peter Tzarkov, А. В. Егоров, E. P. Gitel, А. А. Рагимов, Alexander Boroda, Elena Poddubskaya, Marina Sekacheva
Software Mentions: 8
Published: over 4 years ago

10.1007/s11571-020-09645-y

Construction of embedded fMRI resting-state functional connectivity networks using manifold learning
Cited by: 12
Author(s): Ioannis Gallos, Evangelos Galaris, Constantinos Siettos
Software Mentions: 8
Published: about 4 years ago

10.3390/ijms22042102

Putative Circulating MicroRNAs Are Able to Identify Patients with Mitral Valve Prolapse and Severe Regurgitation
Cited by: 6
Author(s): Paola Songia, Mattia Chiesa, Valentina Alfieri, Ilaria Massaiu, Donato Moschetta, Veronika A. Myasoedova, Vincenza Valerio, Laura Fusini, Paola Gripari, Marco Zanobini, Paolo Poggio
Software Mentions: 8
Published: almost 4 years ago

10.3390/jintelligence6030041

How Specific Abilities Might Throw ‘g’ a Curve: An Idea on How to Capitalize on the Predictive Validity of Specific Cognitive Abilities
Cited by: 4
Author(s): Matthias Ziegler, Aaron Peikert
Software Mentions: 8
Published: about 6 years ago

10.3389/fonc.2020.558596

Development and Validation of Autophagy-Related Gene Signature and Nomogram for Predicting Survival in Oral Squamous Cell Carcinoma
Cited by: 25
Author(s): Chen Hou, Hao Cai, Yue Zhu, Shuojin Huang, Song Fan, Jinsong Hou
Software Mentions: 8
Published: about 4 years ago

10.1007/s10278-018-0154-z

Automatic Labeling of Special Diagnostic Mammography Views from Images and DICOM Headers
Cited by: 5
Author(s): Dmytro Lituiev, Hari Trivedi, Maryam Panahiazar, Beau Norgeot, Youngho Seo, Benjamin L. Franc, Roy Harnish, Michael Kawczynski, Dexter Hadley
Software Mentions: 8
Published: about 6 years ago

10.3389/fnhum.2020.614979

The Error-Related Negativity Predicts Self-Control Failures in Daily Life
Cited by: 12
Author(s): Rebecca Overmeyer, Julia Berghäuser, Raoul Dieterich, Max Wolff, Thomas Goschke, Tanja Endraß
Software Mentions: 8
Published: almost 4 years ago

10.18632/aging.103532

Prognostic evaluation of esophageal cancer patients with stages I-III
Cited by: 21
Author(s): Mengjun Qiu, Shuai Yang, Mengmeng Wang, Yanan Li, Xin Jiang, Zaozao Huang, Zhifan Xiong
Software Mentions: 8
Published: over 4 years ago

10.1186/s40462-021-00245-x

An evaluation of machine learning classifiers for next-generation, continuous-ethogram smart trackers
Cited by: 15
Author(s): Hui Yu, Jian Deng, Ran Nathan, Max Kröschel, Sasha Pekarsky, Guozheng Li, Marcel Klaassen
Software Mentions: 8
Published: over 3 years ago

10.1128/mSystems.00112-21

Metagenomic Analysis of Common Intestinal Diseases Reveals Relationships among Microbial Signatures and Powers Multidisease Diagnostic Models
Cited by: 10
Author(s): Puzi Jiang, Sicheng Wu, Qibin Luo, Xing‐Ming Zhao, Weihua Chen
Software Mentions: 8
Published: over 3 years ago

10.1371/journal.pone.0239623

A non-parametric effect-size measure capturing changes in central tendency and data distribution shape
Cited by: 5
Author(s): Jörn Lötsch, Alfred Ultsch
Software Mentions: 8
Published: about 4 years ago

10.3390/molecules26102854

Detection of Paratuberculosis in Dairy Herds by Analyzing the Scent of Feces, Alveolar Gas, and Stable Air
Cited by: 1
Author(s): M. Weber, Peter Gierschner, Anne Klassen, Elisa Kasbohm, Jochen K. Schubert, Wolfram Miekisch, Petra Reinhold, Heike Köhler
Software Mentions: 7
Published: over 3 years ago

10.3390/cancers13061296

Candidate Markers of Olaparib Response from Genomic Data Analyses of Human Cancer Cell Lines
Cited by: 3
Author(s): Setor Amuzu, Eurı́dice Carmona, Anne-Marie Mes-Masson, Celia M.T. Greenwood, Patricia N. Tonin, Jiannis Ragoussis
Software Mentions: 7
Published: over 3 years ago

10.3390/molecules24162977

VOC Profiles of Saliva in Assessment of Halitosis and Submandibular Abscesses Using HS-SPME-GC/MS Technique
Cited by: 32
Author(s): Fernanda Monedeiro, Maciej Milanowski, Ileana-Andreea Raţiu, Hubert Zmysłowski, Tomasz Ligor, Bogusław Buszewski
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0233282

Can we decode phonetic features in inner speech using surface electromyography?
Cited by: 8
Author(s): Ladislas Nalborczyk, Romain Grandchamp, Ernst H. W. Koster, Marcela Perrone‐Bertolotti, Hélène Lœvenbruck
Software Mentions: 7
Published: over 4 years ago

10.3390/molecules26113475

Unveiling Putative Functions of Mucus Proteins and Their Tryptic Peptides in Seven Gastropod Species Using Comparative Proteomics and Machine Learning-Based Bioinformatics Predictions
Cited by: 13
Author(s): Viroj Tachapuripunya, Sittiruk Roytrakul, Pramote Chumnanpuen, Teerasak E-kobon
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0124600

MLViS: A Web Tool for Machine Learning-Based Virtual Screening in Early-Phase of Drug Discovery and Development
Cited by: 36
Author(s): Selçuk Korkmaz, Gökmen Zararsız, Dinçer Göksülük
Software Mentions: 7
Published: over 9 years ago

10.3390/jcm9124131

Predicting the Response of High Frequency Spinal Cord Stimulation in Patients with Failed Back Surgery Syndrome: A Retrospective Study with Machine Learning Techniques
Cited by: 5
Author(s): Lisa Goudman, Jean‐Pierre Van Buyten, Ann De Smedt, Iris Smet, Marieke Devos, Ali Jerjir, Maarten Moens
Software Mentions: 7
Published: almost 4 years ago

10.1186/1758-2946-6-35

Proteochemometric modeling in a Bayesian framework
Cited by: 39
Author(s): Isidro Cortés-Ciriano, Gerard J. P. van Westen, Eelke B. Lenselink, Daniel S. Murrell, Andreas Bender, Thérèse E. Malliavin
Software Mentions: 7
Published: over 10 years ago

10.3390/microorganisms9091939

Human Milk Oligosaccharide-Stimulated Bifidobacterium Species Contribute to Prevent Later Respiratory Tract Infections
Cited by: 18
Author(s): Shaillay Kumar Dogra, François-Pierre Martin, Dominique Donnicola, Monique Julita, Bernard Berger, Norbert Sprenger
Software Mentions: 7
Published: about 3 years ago

10.1186/s13321-015-0086-2

Chemically Aware Model Builder (camb): an R package for property and bioactivity modelling of small molecules
Cited by: 36
Author(s): Daniel S. Murrell, Isidro Cortés-Ciriano, Gerard J. P. van Westen, Ian P. Stott, Andreas Bender, Thérèse E. Malliavin, Robert C. Glen
Software Mentions: 7
Published: about 9 years ago

10.7150/thno.52717

m⁶A regulator-based methylation modification patterns characterized by distinct tumor microenvironment immune profiles in colon cancer
Cited by: 135
Author(s): Wei Chong, Liang Shang, Jin Liu, Zhen Fang, Fengying Du, Hao Wu, Liu Yang, Zhe Wang, Chen Yang, Shengtao Jia, Liming Chen, Leping Li, Hao Chen
Software Mentions: 7
Published: almost 4 years ago

10.1038/s41598-021-93286-6

Development and validation of an institutional nomogram for aiding aneurysm rupture risk stratification
Cited by: 3
Author(s): Qinglin Liu, Peng Jiang, Yuhua Jiang, Huijian Ge, Shaolin Li, Hengwei Jin, Peng Liu, YouXiang Li
Software Mentions: 7
Published: over 3 years ago

10.3390/insects11080460

Honeydew Deposition by the Giant Willow Aphid (Tuberolachnus salignus) Affects Soil Biota and Soil Biochemical Properties
Cited by: 7
Author(s): Kyaw Min Tun, Andrea Clavijo McCormick, Trevor Jones, Stanislav Garbuz, Maria A. Minor
Software Mentions: 7
Published: over 4 years ago

10.1038/s41598-021-87577-1

Cetacean distribution models based on visual and passive acoustic data
Cited by: 11
Author(s): Kaitlin E. Frasier, Lance P. Garrison, Melissa S. Soldevilla, Sean M. Wiggins, John A. Hildebrand
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-021-88944-8

Association between ACE2 and TMPRSS2 nasopharyngeal expression and COVID-19 respiratory distress
Cited by: 29
Author(s): Átila Duque Rossi, João Locke Ferreira de Araújo, Tailah Bernardo de Almeida, Marcelo Ribeiro-Alves, Camila de Almeida Velozo, Jéssica Maciel de Almeida, Isabela de Carvalho Leitão, Sâmila Natiane Ferreira, Jéssica da Silva Oliveira, Hugo José Alves, Helena Toledo Scheid, Débora S. Faffe, Rafael Mello Galliez, Renata Eliane de Ávila, Gustavo Gomes Resende, Mauro Martins Teixeira, Alice Laschuk Herlinger, Aliny dos Santos Carvalho, André F. Santos, Anna Carla Pinto Castiñeiras, Bianca Isabelle Barreto Teixeira, Bianca Ortiz da Silva, Bruno Clarkson, Bruno Eduardo Dematté, Camila Nacif, Camille Victória Leal Correia de Silva, Carolina M. Voloch, Caroline Macedo Nascimento, Carolyne Lalucha Alves L. da Graça, Cássia Cristina Alves Gonçalves, Cíntia Policarpo, Diana Mariani, Ekaterini Simões Goudouri, Elaine Sobral da Costa, Elisangela Costa da Silva, Enrico Bruno Riscarolli, Érica Ramos dos Santos Nascimento, Fabio Hecht Castro Medeiros, Fábio L. Monteiro, Fernanda Nunes Santos, Fernando Luz de Castro, Filipe Romero Rebello Moreira, Francine Bittencourt Schiffler, Gabriela Bergiante Kraychete, Gabriele Silveira da Cunha, Gisely Novaes Borges da Cunha, Guilherme Sant’Anna de Lira, Gustavo Peixoto Duarte da Silva, Harrison James Westgarth, Helena D.’Anunciação de Oliveira, Helena Keito Toma, Huang Fang, Inês Corrêa Gonçalves, Ingrid Camelo da Silva, Isabela Labarba Carvalho de Almeida, Joissy Aprigio de Oliveira, Juliana Cazarin de Menezes, Juliana T.S. Fortuna, Karyne Ferreira Monteiro, Kíssyla Harley Della Pascôa França, Laura Zalcberg Renault, Lendel Correia da Costa, Leticia Averbug Correa, Liane de Jesus Ribeiro, Lídia Theodoro Boullosa, Liliane Tavares de Faria Cavalcante, Luana dos Santos Costa, Lucas Matos Millioni, Luciana Jesus da Costa, Luiza M. Higa, Marcela dos Santos Durães, Marcelo Amaral de Souza, Marcelo Calado de Paula Tôrres, Mariana Freire Campos, Mariana Quinto, Mariane Talon de Menezes, Marisa Souza Correia, Mateus Rodrigues de Queiroz, Matheus Augusto Calvano Cosentino, Mayla Gabryele Miranda de Melo, Mirela D’arc Ferreira da Costa, Pedro Paz, Raíssa Mirella dos Santos Cunha da Costa, Raquel Fernandes Coelho, Richard Araujo Maia, Rodrigo de Moraes Brindeiro, Romina Carvalho Ferreira, Sérgio Machado Lisboa, Thamiris dos Santos Miranda, Victor Akira Ota, Victoria Cortes Bastos, Viviane Guimarães Gomes, Orlando da Costa Ferreira Júnior, Terezinha Marta Pereira Pinto Castiñeiras, Renan Pedra de Souza, Amílcar Tanuri, Renato Santana Aguiar, Shana Priscila Coutinho Barroso, Cynthia Chester Cardoso
Software Mentions: 7
Published: over 3 years ago

10.3390/s19071588

Reducing False Arrhythmia Alarms Using Different Methods of Probability and Class Assignment in Random Forest Learning Methods
Cited by: 9
Author(s): Krzysztof Gajowniczek, Iga Grzegorczyk, Tomasz Ząbkowski
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0215565

A robust data-driven genomic signature for idiopathic pulmonary fibrosis with applications for translational model selection
Cited by: 6
Author(s): Ron Ammar, Pitchumani Sivakumar, Gábor Járai, John Ryan Thompson
Software Mentions: 7
Published: over 5 years ago

10.1038/s41598-020-67629-8

Machine learning-based prediction of acute severity in infants hospitalized for bronchiolitis: a multicenter prospective study
Cited by: 17
Author(s): Yoshihiko Raita, Carlos A. Camargo, Charles G. Macias, Jonathan M. Mansbach, Pedro A. Piedra, Stephen C. Porter, Stephen J. Teach, Kohei Hasegawa
Software Mentions: 7
Published: over 4 years ago

10.1002/mp.12967

Machine learning algorithms for outcome prediction in (chemo)radiotherapy: An empirical comparison of classifiers
Cited by: 188
Author(s): Timo M. Deist, Frank J. W. M. Dankers, Gilmer Valdés, Robin Wijsman, I‐Chow Hsu, Cary Oberije, Tim Lustberg, Johan van Soest, Frank Hoebers, Arthur Jochems, Issam El Naqa, Leonard Wee, Olivier Morin, David R. Raleigh, Wouter Bots, Johannes H.A.M. Kaanders, J. Belderbos, Margriet Kwint, Timothy D. Solberg, R. Monshouwer, Johan Bussink, André Dekker, Philippe Lambin
Software Mentions: 7
Published: over 6 years ago

10.1038/s41598-020-66404-z

Does entry to center-based childcare affect gut microbial colonization in young infants?
Cited by: 9
Author(s): Gerben D. A. Hermes, Henrik Eckermann, Willem M. de Vos, Carolina de Weerth
Software Mentions: 7
Published: over 4 years ago

10.1007/s00330-020-07195-9

Improved differentiation between primary lung cancer and pulmonary metastasis by combining dual-energy CT–derived biomarkers with conventional CT attenuation
Cited by: 19
Author(s): Dominik Deniffel, Andreas Sauter, Alexander A. Fingerle, Ernst J. Rummeny, Marcus R. Makowski, Daniela Pfeiffer
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pone.0227289

Characterization of gut microbiomes of household pets in the United States using a direct-to-consumer approach
Cited by: 27
Author(s): Aashish R. Jha, Justin Shmalberg, Jirayu Tanprasertsuk, Lee Ann M. Perry, Dan Massey, Ryan W. Honaker
Software Mentions: 7
Published: almost 5 years ago

10.3389/fgene.2021.744113

Identification and Validation of Hypoxia-Related lncRNA Signature as a Prognostic Model for Hepatocellular Carcinoma
Cited by: 8
Author(s): Chengke Zhou, Huajun Zhang, Liqing Lu
Software Mentions: 7
Published: about 3 years ago

10.1186/s40249-019-0612-y

Seasonality modeling of the distribution of Aedes albopictus in China based on climatic and environmental suitability
Cited by: 31
Author(s): Xiao Zheng, Daibin Zhong, Yulan He, Guofa Zhou
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41598-021-80970-w

Breath can discriminate tuberculosis from other lower respiratory illness in children
Cited by: 19
Author(s): Carly A. Bobak, Lili Kang, Lesley Workman, Lindy Bateman, Mohammad Sharif Khan, Margaretha Prins, Lloyd May, Flavio A. Franchina, Cynthia Baard, Mark P. Nicol, Heather J. Zar, Jane E. Hill
Software Mentions: 7
Published: almost 4 years ago

10.3390/electronics9010099

Weighted Random Forests to Improve Arrhythmia Classification
Cited by: 21
Author(s): Krzysztof Gajowniczek, Iga Grzegorczyk, Tomasz Ząbkowski, Chandrajit L. Bajaj
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pone.0225577

Designing machine learning workflows with an application to topological data analysis
Cited by: 4
Author(s): Eric Cawi, Patricio S. La Rosa, Arye Nehorai
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41598-019-50686-z

Antimicrobial Resistance Prediction for Gram-Negative Bacteria via Game Theory-Based Feature Evaluation
Cited by: 22
Author(s): Abu Sayed Chowdhury, Douglas R. Call, Shira L. Broschat
Software Mentions: 7
Published: about 5 years ago

10.1371/journal.pone.0257510

Environmental DNA gives comparable results to morphology-based indices of macroinvertebrates in a large-scale ecological assessment
Cited by: 17
Author(s): Jeanine Brantschen, Rosetta C. Blackman, Jean‐Claude Walser, Florian Altermatt
Software Mentions: 7
Published: about 3 years ago

10.3390/e23040477

Hybrid Basketball Game Outcome Prediction Model by Integrating Data Mining Methods for the National Basketball Association
Cited by: 11
Author(s): Wei-Jen Chen, Mao-Jhen Jhou, Tian–Shyug Lee, Chi-Jie Lu
Software Mentions: 7
Published: over 3 years ago

10.1186/s13059-019-1862-5

scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data
Cited by: 225
Author(s): José Alquicira-Hernández, Anuja Sathe, Hanlee P. Ji, Quan Nguyen, Joseph E. Powell
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pntd.0008015

Plasma metabolomics of the time resolved response to Opisthorchis felineus infection in an animal model (golden hamster, Mesocricetus auratus)
Cited by: 9
Author(s): Daria Kokova, Aswin Verhoeven, Ekaterina A. Perina, В. В. Иванов, Elena M. Knyazeva, Irina V. Saltykova, Oleg A. Mayboroda
Software Mentions: 7
Published: almost 5 years ago

10.1371/journal.pntd.0006044

Exploratory metabolomics study of the experimental opisthorchiasis in a laboratory animal model (golden hamster, Mesocricetus auratus)
Cited by: 15
Author(s): Daria Kokova, Sarantos Kostidis, Judit Morello, Nataly Dementeva, Ekaterina A. Perina, V. V. Ivanov, Л. М. Огородова, А. Э. Сазонов, Irina V. Saltykova, Oleg A. Mayboroda
Software Mentions: 7
Published: about 7 years ago

10.1371/journal.pone.0159138

Technical Advances of the Recombinant Antibody Microarray Technology Platform for Clinical Immunoproteomics
Cited by: 26
Author(s): Payam Delfani, Linda Dexlin Mellby, Malin Nordström, Andreas Holmér, Mattias Ohlsson, Carl Borrebaeck, Christer Wingren
Software Mentions: 7
Published: over 8 years ago

10.1371/journal.pone.0201016

Predicting hospital admission at emergency department triage using machine learning
Cited by: 155
Author(s): Woo Suk Hong, Adrian D. Haimovich, Richard A. Taylor
Software Mentions: 7
Published: over 6 years ago

10.1371/journal.pbio.3001390

Identifying and prioritizing potential human-infecting viruses from their genome sequences
Cited by: 43
Author(s): Nardus Mollentze, Simon A. Babayan, Daniel G. Streicker
Software Mentions: 7
Published: about 3 years ago

10.1186/s13690-021-00687-0

Use of artificial intelligence for public health surveillance: a case study to develop a machine Learning-algorithm to estimate the incidence of diabetes mellitus in France
Cited by: 4
Author(s): Romana Haneef, Sofiane Kab, Rok Hrzic, Sonsoles Fuentes, Sandrine Fosse-Edorh, E. Cosson, Anne Gallay
Software Mentions: 7
Published: about 3 years ago

10.1371/journal.pone.0237419

Development and validation of a model for individualized prediction of hospitalization risk in 4,536 patients with COVID-19
Cited by: 106
Author(s): Lara Jehi, Xinge Ji, Alex Milinovich, Serpil C. Erzurum, Amy Merlino, Steve Gordon, James B. Young, Michael W. Kattan
Software Mentions: 7
Published: over 4 years ago

10.1038/s41598-018-21197-0

Effects of timber harvesting on the genetic potential for carbon and nitrogen cycling in five North American forest ecozones
Cited by: 14
Author(s): Erick Cardenas, Luis H. Orellana, Konstantinos T. Konstantinidis, William W. Mohn
Software Mentions: 7
Published: almost 7 years ago

10.3390/plants8070224

Phenotypic and Genetic Variation of an Interspecific Centaurium Hybrid (Gentianaceae) and Its Parental Species
Cited by: 4
Author(s): Tijana Banjanac, Sanja Đurović, Mihailo Jelić, Milan Dragićević, Danijela Mišić, Marijana Škorić, Jelena Živković, Branislav Šiler
Software Mentions: 7
Published: over 5 years ago

10.34133/2020/3729715

Repeated Multiview Imaging for Estimating Seedling Tiller Counts of Wheat Genotypes Using Drones
Cited by: 21
Author(s): Lukas Roth, Moritz Paul Camenzind, Helge Aasen, Lukas Kronenberg, Christoph Barendregt, Karl‐Heinz Camp, Achim Walter, Norbert Kirchgeßner, Andreas Hund
Software Mentions: 7
Published: almost 5 years ago

10.1038/s41598-018-23584-z

Antidepressant drug-specific prediction of depression treatment outcomes from genetic and clinical variables
Cited by: 48
Author(s): Raquel Iniesta, Karen Hodgson, Daniel Ståhl, Karim Malki, Wolfgang Maier, Marcella Rietschel, Ole Mors, Joanna Hauser, Neven Henigsberg, Mojca Zvezdana Dernovšek, Daniel Souery, Richard Dobson, Katherine J. Aitchison, Anne Farmer, Peter McGuffin, Cathryn M. Lewis, Rudolf Uher
Software Mentions: 7
Published: over 6 years ago

10.1038/s41598-019-45989-0

Machine learning approaches to predict lupus disease activity from gene expression data
Cited by: 48
Author(s): Brian Kegerreis, Michelle D. Catalina, Prathyusha Bachali, Nicholas S. Geraci, Adam C. Labonte, Chen Zeng, Nathaniel Stearrett, Keith A. Crandall, Peter E. Lipsky, Amrie C. Grammer
Software Mentions: 7
Published: over 5 years ago

10.34133/2020/4216373

Semantic Segmentation of Sorghum Using Hyperspectral Data Identifies Genetic Associations
Cited by: 24
Author(s): Chenyong Miao, Alejandro Pages, Zheng Xu, Eric Rodene, Jinliang Yang, James C. Schnable
Software Mentions: 7
Published: almost 5 years ago