Projects: pypi: assembly-stats
https://packages.ecosyste.ms/registries/pypi.org/packages/assembly-stats
Calculates both scaffold and contig statistics (N50, L50, etc.) from a scaffold FASTA file.
5 versions
Latest release: over 5 years ago
80 downloads last month
Enhanced Analysis
Educational Contributors:
triznam@si.edu
Repository Activity:
Repository Owner:
Mike Trizna (user)
README Analysis:
DOI Found
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+20
Educational commit emails
1 contributors with educational email addresses -
+6
Science terms in README
3 scientific terms found in README -
+10
DOI references
1 DOI references found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-15
No science keywords
No scientific terms found in keywords/classifiers -
-25
Non-science indicators
1 non-scientific terms found
Very Likely Science (100)
Papers Mentioning assembly-stats 9
10.1186/s40168-019-0626-5
Choice of assembly software has a critical impact on virome characterisationCited by: 94
Author(s): Thomas D.S. Sutton, Adam G. Clooney, Feargal J. Ryan, R. Paul Ross, Colin Hill
Software Mentions: 8
Published: over 6 years ago
10.1186/s12915-021-01134-w
Comparative analysis reveals within-population genome size variation in a rotifer is driven by large genomic elements with highly abundant satellite DNA repeat elementsCited by: 7
Author(s): Claus‐Peter Stelzer, Julie Blommaert, Ann‐Marie Waldvogel, Maria Pichler, Bette Hecox-Lea, David Welch
Software Mentions: 7
Published: almost 4 years ago
10.3389/fmicb.2020.591093
NGS-Based S. aureus Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency TestCited by: 8
Author(s): David Dylus, Trestan Pillonel, Onya Opota, Daniel Wüthrich, Helena M. B. Seth-Smith, Adrian Egli, Stefano Leo, Vladimir Lazarević, Jacques Schrenzel, Sacha Laurent, Claire Bertelli, Dominique Blanc, Stefan Neuenschwander, Alban Ramette, Laurent Falquet, Frank Imkamp, Peter M. Keller, André Kahles, Simone Oberhaensli, Valérie Barbié, Christophe Dessimoz, Gilbert Greub, Aitana Lebrand
Software Mentions: 6
Published: over 4 years ago
10.1093/gbe/evz245
The Rhododendron Genome and Chromosomal Organization Provide Insight into Shared Whole-Genome Duplications across the Heath Family (Ericaceae)Cited by: 42
Author(s): Valerie L. Soza, Dale Lindsley, Adam Waalkes, Elizabeth Ramage, Rupali P Patwardhan, Joshua N. Burton, Andrew Adey, Akash Kumar, Ruolan Qiu, Jay Shendure, Benjamin D. Hall
Software Mentions: 6
Published: over 5 years ago
10.1371/journal.pone.0239924
Clinical and molecular characteristics of carbapenem non-susceptible Escherichia coli: A nationwide survey from OmanCited by: 16
Author(s): Hissa Al-Farsi, Angela Camporeale, Karolina Ininbergs, Saleh Al-Azri, Zakariya Al-Muharrmi, Amina Al-Jardani, Christian G. Giske
Software Mentions: 3
Published: almost 5 years ago
10.1016/j.dib.2020.106674
Illumina short-read sequencing data, de novo assembly and annotations of the Drosophila nasuta nasuta genomeCited by: 0
Author(s): Stafny DSouza, Koushik Ponnanna, C. Amruthavalli, Nallur B. Ramachandra
Software Mentions: 2
Published: over 4 years ago
10.1038/s41598-021-94068-w
The first draft genome of feather grasses using SMRT sequencing and its implications in molecular studies of StipaCited by: 3
Author(s): Evgenii Baiakhmetov, Cervin Guyomar, Ekaterina Shelest, Marcin Nobis, Polina D. Gudkova
Software Mentions: 1
Published: about 4 years ago
10.1093/gigascience/giz122
A high-quality genome assembly from a single, field-collected spotted lanternfly (Lycorma delicatula) using the PacBio Sequel II systemCited by: 34
Author(s): Sarah B. Kingan, Julie Urban, Christine Lambert, Primo Baybayan, Anna K. Childers, Brad S. Coates, Brian E. Scheffler, Kevin J. Hackett, Jonas Korlach, Scott M. Geib
Software Mentions: 1
Published: almost 6 years ago
10.1093/gigascience/giab041
<i>De novo</i> genome assemblies of butterfliesCited by: 23
Author(s): Emily A. Ellis, Caroline Storer, Akito Y. Kawahara
Software Mentions: 1
Published: about 4 years ago